Wall clock time and date at job start Fri Apr 10 2020 22:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47489 * 2 1 4 4 C 1.52993 * 109.47142 * 185.10915 * 3 2 1 5 5 C 1.53004 * 112.85100 * 297.29139 * 4 3 2 6 6 N 1.46496 * 109.47258 * 293.78874 * 5 4 3 7 7 C 1.34775 * 120.00030 * 175.17220 * 6 5 4 8 8 O 1.21592 * 119.99774 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00214 * 180.02562 * 7 6 5 10 10 C 1.47028 * 125.64871 * 359.95246 * 9 7 6 11 11 C 1.54363 * 107.28762 * 181.12926 * 10 9 7 12 12 C 1.55157 * 102.92224 * 22.14425 * 11 10 9 13 13 O 1.42890 * 111.00920 * 82.63721 * 12 11 10 14 14 C 1.50706 * 111.00253 * 206.45357 * 12 11 10 15 15 H 1.08000 * 119.99794 * 356.81217 * 14 12 11 16 16 C 1.37877 * 119.99753 * 176.54241 * 14 12 11 17 17 N 1.31517 * 120.00128 * 0.27254 * 16 14 12 18 18 Si 1.86797 * 119.99658 * 180.27263 * 16 14 12 19 19 H 1.48501 * 109.47669 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47218 * 119.99999 * 18 16 14 21 21 H 1.48507 * 109.47331 * 239.99879 * 18 16 14 22 22 C 1.47429 * 125.64786 * 179.97438 * 9 7 6 23 23 C 1.53781 * 113.69065 * 68.56544 * 4 3 2 24 24 C 1.53774 * 87.08277 * 89.12626 * 23 4 3 25 25 C 1.53777 * 87.08198 * 25.43300 * 24 23 4 26 26 H 1.08999 * 109.47453 * 59.99510 * 1 2 3 27 27 H 1.09000 * 109.47666 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46833 * 299.99235 * 1 2 3 29 29 H 1.09005 * 109.46468 * 240.00467 * 2 1 3 30 30 H 1.08998 * 109.47187 * 120.00970 * 2 1 3 31 31 H 1.09003 * 109.46632 * 65.11055 * 3 2 1 32 32 H 1.08996 * 109.47316 * 305.11455 * 3 2 1 33 33 H 1.09009 * 109.47047 * 173.78883 * 5 4 3 34 34 H 1.08996 * 109.46626 * 53.79346 * 5 4 3 35 35 H 0.96997 * 120.00156 * 355.17145 * 6 5 4 36 36 H 1.09004 * 109.88030 * 300.51897 * 10 9 7 37 37 H 1.09007 * 109.87807 * 61.67912 * 10 9 7 38 38 H 1.08997 * 110.70932 * 263.79770 * 11 10 9 39 39 H 1.09004 * 110.75166 * 140.50699 * 11 10 9 40 40 H 0.96703 * 114.00660 * 183.18135 * 13 12 11 41 41 H 0.96998 * 119.99942 * 179.97438 * 17 16 14 42 42 H 1.09000 * 110.36491 * 36.99812 * 22 9 7 43 43 H 1.08992 * 110.36510 * 274.66714 * 22 9 7 44 44 H 1.09007 * 113.61150 * 203.67545 * 23 4 3 45 45 H 1.09002 * 113.61250 * 334.57095 * 23 4 3 46 46 H 1.09001 * 113.61215 * 270.88498 * 24 23 4 47 47 H 1.09007 * 113.69473 * 139.99404 * 24 23 4 48 48 H 1.09002 * 113.61294 * 220.02084 * 25 24 23 49 49 H 1.08996 * 113.61526 * 89.12066 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4443 -0.1285 5 6 4.2610 0.7616 1.0505 6 7 4.0378 1.5436 2.2690 7 6 4.4778 1.0817 3.4562 8 8 5.0595 0.0157 3.5160 9 7 4.2720 1.8010 4.5773 10 6 3.5864 3.0996 4.6485 11 6 3.6139 3.5526 6.1239 12 6 4.8074 2.7532 6.7101 13 8 6.0475 3.4064 6.4320 14 6 4.6356 2.5345 8.1913 15 1 3.7889 2.9641 8.7059 16 6 5.5565 1.7814 8.8883 17 7 6.5877 1.2584 8.2616 18 14 5.3394 1.5041 10.7228 19 1 4.1086 2.1940 11.1856 20 1 5.2228 0.0485 10.9930 21 1 6.5147 2.0496 11.4485 22 6 4.6976 1.4160 5.9353 23 6 4.0695 0.9695 -1.5012 24 6 3.9765 2.4359 -1.9549 25 6 4.1518 2.8222 -0.4768 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8899 31 1 1.7533 1.9291 0.9323 32 1 1.6039 1.9821 -0.8406 33 1 5.3308 0.6956 0.8519 34 1 3.8535 -0.2407 1.1822 35 1 3.5734 2.3939 2.2213 36 1 4.1076 3.8285 4.0277 37 1 2.5550 2.9932 4.3121 38 1 2.6852 3.2835 6.6270 39 1 3.7958 4.6250 6.1953 40 1 6.8256 2.9195 6.7364 41 1 7.2357 0.7289 8.7521 42 1 5.6657 0.9163 5.9020 43 1 3.9517 0.7696 6.3976 44 1 5.0883 0.5823 -1.4816 45 1 3.3740 0.3077 -2.0173 46 1 3.0028 2.7053 -2.3641 47 1 4.8045 2.7514 -2.5898 48 1 3.5225 3.6562 -0.1659 49 1 5.1929 2.9416 -0.1772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591987769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:16 Heat of formation + Delta-G solvation = -76.554629 kcal Electronic energy + Delta-G solvation = -27082.844102 eV Core-core repulsion = 23430.781997 eV Total energy + Delta-G solvation = -3652.062105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36452 -39.22821 -37.23971 -34.37702 -34.18451 -33.78950 -32.16268 -30.19720 -28.74880 -27.72803 -26.49548 -25.94534 -24.76311 -22.89865 -22.28565 -21.42995 -19.61620 -19.41210 -18.35818 -17.53682 -17.03000 -16.01060 -15.65611 -15.48547 -14.98780 -14.96455 -14.67949 -14.37318 -13.92984 -13.82565 -13.50407 -13.24220 -12.97209 -12.80220 -12.66509 -12.40239 -12.12518 -11.99938 -11.85618 -11.61236 -11.53408 -11.37428 -11.21980 -11.04112 -10.97626 -10.77131 -10.56676 -10.49520 -10.44578 -10.27300 -10.16936 -10.11143 -9.54848 -9.34558 -8.71515 -8.66201 -8.32036 -7.62103 -6.25677 -4.35249 3.18405 3.23671 3.30374 3.33601 3.83255 4.24971 4.29840 4.34521 4.45183 4.62154 4.65503 4.83263 4.96884 5.01557 5.06146 5.17615 5.38078 5.44169 5.45663 5.54222 5.58560 5.64573 5.67279 5.70312 5.71840 5.75395 5.79923 5.81228 5.87956 5.97167 6.04739 6.05539 6.15816 6.20146 6.25629 6.30873 6.54242 6.73873 6.87749 6.91816 7.02796 7.27604 7.36687 7.71690 7.77406 8.05341 8.60710 8.70092 9.21826 9.33890 9.44591 10.81502 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.003092 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.840648 B = 9053.425440 C = 9305.979558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.093 4.093 4 C -0.095 4.095 5 C 0.156 3.844 6 N -0.747 5.747 7 C 0.715 3.285 8 O -0.599 6.599 9 N -0.628 5.628 10 C 0.107 3.893 11 C -0.116 4.116 12 C 0.248 3.752 13 O -0.583 6.583 14 C -0.537 4.537 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.892 5.892 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.114 3.886 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.132 4.132 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.392 0.608 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.383 0.617 41 H 0.270 0.730 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 2.094 -18.293 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.130 4.130 4 C -0.095 4.095 5 C 0.032 3.968 6 N -0.404 5.404 7 C 0.417 3.583 8 O -0.478 6.478 9 N -0.365 5.365 10 C -0.017 4.017 11 C -0.154 4.154 12 C 0.207 3.793 13 O -0.393 6.393 14 C -0.576 4.576 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.531 5.531 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.008 4.008 23 C -0.164 4.164 24 C -0.177 4.177 25 C -0.170 4.170 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.225 0.775 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.234 0.766 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.680 1.576 -18.535 20.527 hybrid contribution 0.093 -0.257 1.205 1.236 sum -8.586 1.320 -17.330 19.386 Atomic orbital electron populations 1.21760 0.95985 1.01538 1.01583 1.21545 0.95592 0.96797 1.02413 1.21352 0.92376 0.97259 1.02009 1.22151 0.95677 0.97113 0.94581 1.21070 0.99212 0.94672 0.81889 1.45033 1.64250 1.25229 1.05852 1.15538 0.79742 0.83422 0.79584 1.90880 1.48429 1.23002 1.85519 1.47904 1.59965 1.21173 1.07487 1.21907 0.94998 0.85425 0.99357 1.22597 0.99649 1.00697 0.92452 1.19629 0.81687 0.85929 0.92011 1.86073 1.17212 1.51887 1.84091 1.21516 1.10340 1.33028 0.92692 0.91492 1.25087 0.94756 0.94187 0.99244 1.69673 1.12692 1.34226 1.36537 0.86354 0.78282 0.77996 0.84283 1.19601 1.20775 1.20776 1.23113 1.00247 1.00243 0.77229 1.22939 1.01642 0.96722 0.95081 1.22795 1.01803 0.96559 0.96575 1.22984 1.01573 0.96286 0.96143 0.93011 0.92862 0.92754 0.91926 0.91543 0.91627 0.91712 0.92283 0.91600 0.77481 0.92773 0.93315 0.90496 0.90825 0.76589 0.92019 0.89946 0.92616 0.89814 0.91137 0.90310 0.91552 0.91422 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.15 0.37 -0.87 16 2 C -0.13 -1.14 5.50 -26.73 -0.15 -1.29 16 3 C -0.09 -0.81 4.49 -26.74 -0.12 -0.93 16 4 C -0.09 -0.89 0.49 -153.70 -0.07 -0.97 16 5 C 0.16 2.06 4.83 -4.04 -0.02 2.04 16 6 N -0.75 -11.44 5.20 -65.22 -0.34 -11.78 16 7 C 0.72 14.87 8.49 -86.92 -0.74 14.13 16 8 O -0.60 -14.89 16.60 5.28 0.09 -14.80 16 9 N -0.63 -13.25 3.33 -176.19 -0.59 -13.84 16 10 C 0.11 1.88 6.15 -3.04 -0.02 1.86 16 11 C -0.12 -2.30 6.13 -24.88 -0.15 -2.45 16 12 C 0.25 6.04 0.88 -89.61 -0.08 5.96 16 13 O -0.58 -15.04 13.17 -35.23 -0.46 -15.51 16 14 C -0.54 -14.02 8.26 -34.44 -0.28 -14.30 16 15 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 16 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 17 N -0.89 -24.05 10.69 55.43 0.59 -23.45 16 18 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.11 2.79 5.50 -2.51 -0.01 2.78 16 23 C -0.13 -1.03 7.04 -25.92 -0.18 -1.21 16 24 C -0.14 -1.05 7.73 -25.92 -0.20 -1.25 16 25 C -0.13 -1.17 6.91 -25.92 -0.18 -1.35 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.52 6.82 -51.93 -0.35 0.17 16 30 H 0.07 0.73 6.91 -51.93 -0.36 0.37 16 31 H 0.07 0.62 7.61 -51.93 -0.40 0.23 16 32 H 0.06 0.50 7.31 -51.93 -0.38 0.12 16 33 H 0.06 0.84 8.05 -51.92 -0.42 0.42 16 34 H 0.07 0.94 6.68 -51.93 -0.35 0.60 16 35 H 0.39 5.16 6.85 -40.82 -0.28 4.88 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.38 10.24 7.26 45.56 0.33 10.57 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.08 2.29 7.47 -51.93 -0.39 1.91 16 43 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 44 H 0.08 0.70 8.04 -51.92 -0.42 0.28 16 45 H 0.07 0.53 6.91 -51.93 -0.36 0.17 16 46 H 0.08 0.54 7.60 -51.93 -0.39 0.14 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 49 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -29.95 380.28 -9.87 -39.83 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -7.94 Total: 14.53 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.94 Total: 3.89 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.33 Total: -49.08 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.38 Total: -30.31 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.95 -9.87 -39.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591987769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.729 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds