Wall clock time and date at job start Fri Apr 10 2020 22:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47489 * 2 1 4 4 C 1.52993 * 109.47142 * 185.10915 * 3 2 1 5 5 C 1.53004 * 112.85100 * 297.29139 * 4 3 2 6 6 N 1.46496 * 109.47258 * 293.78874 * 5 4 3 7 7 C 1.34775 * 120.00030 * 175.17220 * 6 5 4 8 8 O 1.21592 * 119.99774 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00214 * 180.02562 * 7 6 5 10 10 C 1.47028 * 125.64871 * 359.95246 * 9 7 6 11 11 C 1.54363 * 107.28762 * 181.12926 * 10 9 7 12 12 C 1.55157 * 102.92224 * 22.14425 * 11 10 9 13 13 O 1.42890 * 111.00920 * 82.63721 * 12 11 10 14 14 C 1.50706 * 111.00253 * 206.45357 * 12 11 10 15 15 H 1.08000 * 119.99794 * 356.81217 * 14 12 11 16 16 C 1.37877 * 119.99753 * 176.54241 * 14 12 11 17 17 N 1.31517 * 120.00128 * 0.27254 * 16 14 12 18 18 Si 1.86797 * 119.99658 * 180.27263 * 16 14 12 19 19 H 1.48501 * 109.47669 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47218 * 119.99999 * 18 16 14 21 21 H 1.48507 * 109.47331 * 239.99879 * 18 16 14 22 22 C 1.47429 * 125.64786 * 179.97438 * 9 7 6 23 23 C 1.53781 * 113.69065 * 68.56544 * 4 3 2 24 24 C 1.53774 * 87.08277 * 89.12626 * 23 4 3 25 25 C 1.53777 * 87.08198 * 25.43300 * 24 23 4 26 26 H 1.08999 * 109.47453 * 59.99510 * 1 2 3 27 27 H 1.09000 * 109.47666 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46833 * 299.99235 * 1 2 3 29 29 H 1.09005 * 109.46468 * 240.00467 * 2 1 3 30 30 H 1.08998 * 109.47187 * 120.00970 * 2 1 3 31 31 H 1.09003 * 109.46632 * 65.11055 * 3 2 1 32 32 H 1.08996 * 109.47316 * 305.11455 * 3 2 1 33 33 H 1.09009 * 109.47047 * 173.78883 * 5 4 3 34 34 H 1.08996 * 109.46626 * 53.79346 * 5 4 3 35 35 H 0.96997 * 120.00156 * 355.17145 * 6 5 4 36 36 H 1.09004 * 109.88030 * 300.51897 * 10 9 7 37 37 H 1.09007 * 109.87807 * 61.67912 * 10 9 7 38 38 H 1.08997 * 110.70932 * 263.79770 * 11 10 9 39 39 H 1.09004 * 110.75166 * 140.50699 * 11 10 9 40 40 H 0.96703 * 114.00660 * 183.18135 * 13 12 11 41 41 H 0.96998 * 119.99942 * 179.97438 * 17 16 14 42 42 H 1.09000 * 110.36491 * 36.99812 * 22 9 7 43 43 H 1.08992 * 110.36510 * 274.66714 * 22 9 7 44 44 H 1.09007 * 113.61150 * 203.67545 * 23 4 3 45 45 H 1.09002 * 113.61250 * 334.57095 * 23 4 3 46 46 H 1.09001 * 113.61215 * 270.88498 * 24 23 4 47 47 H 1.09007 * 113.69473 * 139.99404 * 24 23 4 48 48 H 1.09002 * 113.61294 * 220.02084 * 25 24 23 49 49 H 1.08996 * 113.61526 * 89.12066 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4443 -0.1285 5 6 4.2610 0.7616 1.0505 6 7 4.0378 1.5436 2.2690 7 6 4.4778 1.0817 3.4562 8 8 5.0595 0.0157 3.5160 9 7 4.2720 1.8010 4.5773 10 6 3.5864 3.0996 4.6485 11 6 3.6139 3.5526 6.1239 12 6 4.8074 2.7532 6.7101 13 8 6.0475 3.4064 6.4320 14 6 4.6356 2.5345 8.1913 15 1 3.7889 2.9641 8.7059 16 6 5.5565 1.7814 8.8883 17 7 6.5877 1.2584 8.2616 18 14 5.3394 1.5041 10.7228 19 1 4.1086 2.1940 11.1856 20 1 5.2228 0.0485 10.9930 21 1 6.5147 2.0496 11.4485 22 6 4.6976 1.4160 5.9353 23 6 4.0695 0.9695 -1.5012 24 6 3.9765 2.4359 -1.9549 25 6 4.1518 2.8222 -0.4768 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8899 31 1 1.7533 1.9291 0.9323 32 1 1.6039 1.9821 -0.8406 33 1 5.3308 0.6956 0.8519 34 1 3.8535 -0.2407 1.1822 35 1 3.5734 2.3939 2.2213 36 1 4.1076 3.8285 4.0277 37 1 2.5550 2.9932 4.3121 38 1 2.6852 3.2835 6.6270 39 1 3.7958 4.6250 6.1953 40 1 6.8256 2.9195 6.7364 41 1 7.2357 0.7289 8.7521 42 1 5.6657 0.9163 5.9020 43 1 3.9517 0.7696 6.3976 44 1 5.0883 0.5823 -1.4816 45 1 3.3740 0.3077 -2.0173 46 1 3.0028 2.7053 -2.3641 47 1 4.8045 2.7514 -2.5898 48 1 3.5225 3.6562 -0.1659 49 1 5.1929 2.9416 -0.1772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591987769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:15 Heat of formation + Delta-G solvation = -96.078176 kcal Electronic energy + Delta-G solvation = -27083.690707 eV Core-core repulsion = 23430.781997 eV Total energy + Delta-G solvation = -3652.908710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49636 -40.55965 -38.98347 -36.04291 -35.38426 -34.87999 -34.19117 -31.85685 -29.88659 -29.33371 -27.61828 -26.72466 -26.39342 -24.23987 -23.35868 -22.16584 -21.45813 -20.94703 -19.47070 -19.04470 -18.68743 -17.33302 -16.96189 -16.88058 -16.56241 -16.20140 -16.09954 -15.60765 -15.21750 -15.00793 -14.76300 -14.61624 -14.40057 -14.23346 -13.76616 -13.57515 -13.47836 -13.26900 -13.10176 -12.91855 -12.86213 -12.56196 -12.49987 -12.31425 -12.20031 -12.19077 -12.09408 -11.87885 -11.72539 -11.35253 -11.21023 -11.19176 -10.94589 -10.88540 -10.65871 -10.32412 -10.14621 -9.30490 -8.24724 -6.41929 1.41067 1.44332 1.55378 1.71032 2.17188 2.38563 3.01458 3.09348 3.56380 3.65064 3.74373 3.80756 3.99161 4.04329 4.10961 4.19017 4.25706 4.34376 4.36316 4.49467 4.54834 4.61487 4.70383 4.76677 4.82525 4.89406 4.91754 4.95601 4.97346 5.06446 5.07068 5.09930 5.14002 5.16148 5.28606 5.31322 5.33902 5.39026 5.46363 5.48626 5.50939 5.57041 5.63306 5.76835 6.04578 6.20252 6.65911 7.08903 7.29526 7.36550 7.59541 8.80910 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.003092 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.840648 B = 9053.425440 C = 9305.979558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.088 4.088 4 C -0.090 4.090 5 C 0.155 3.845 6 N -0.722 5.722 7 C 0.708 3.292 8 O -0.648 6.648 9 N -0.634 5.634 10 C 0.108 3.892 11 C -0.110 4.110 12 C 0.232 3.768 13 O -0.588 6.588 14 C -0.555 4.555 15 H 0.071 0.929 16 C 0.024 3.976 17 N -0.918 5.918 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.280 1.280 22 C 0.128 3.872 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.135 4.135 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.407 0.593 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.374 0.626 41 H 0.269 0.731 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 3.794 -19.808 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.125 4.125 4 C -0.090 4.090 5 C 0.031 3.969 6 N -0.378 5.378 7 C 0.410 3.590 8 O -0.531 6.531 9 N -0.370 5.370 10 C -0.014 4.014 11 C -0.148 4.148 12 C 0.191 3.809 13 O -0.396 6.396 14 C -0.593 4.593 15 H 0.089 0.911 16 C -0.177 4.177 17 N -0.557 5.557 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.206 1.206 22 C 0.005 3.995 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.172 4.172 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.224 0.776 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.113 0.887 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.848 3.335 -20.095 23.079 hybrid contribution 0.772 -0.816 1.643 1.990 sum -10.076 2.520 -18.452 21.174 Atomic orbital electron populations 1.21747 0.95151 1.01725 1.02058 1.21525 0.96314 0.96960 1.01503 1.21343 0.91483 0.97076 1.02633 1.22161 0.96039 0.97546 0.93256 1.21226 0.98908 0.94469 0.82300 1.44847 1.62771 1.25608 1.04617 1.15798 0.79622 0.82896 0.80708 1.90840 1.50621 1.25291 1.86392 1.47851 1.60338 1.22479 1.06360 1.22105 0.97077 0.83784 0.98406 1.22602 0.97835 1.00816 0.93517 1.19877 0.82513 0.86749 0.91729 1.86064 1.17517 1.51963 1.84081 1.21856 1.10480 1.33072 0.93888 0.91115 1.25863 0.94550 0.93992 1.03269 1.69797 1.13332 1.34671 1.37897 0.85388 0.78442 0.77610 0.79459 1.18589 1.20961 1.20580 1.22652 0.97429 1.00001 0.79462 1.22960 1.01549 0.97769 0.94058 1.22770 1.02903 0.95308 0.95616 1.22989 1.00912 0.95936 0.97363 0.91476 0.92918 0.93269 0.91151 0.94205 0.92160 0.89568 0.93687 0.93036 0.75725 0.91029 0.89312 0.89228 0.89559 0.77646 0.92163 0.94326 0.94307 0.90438 0.90057 0.88746 0.90984 0.90358 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.44 16 2 C -0.13 -2.08 5.50 30.59 0.17 -1.91 16 3 C -0.09 -1.31 4.49 30.59 0.14 -1.18 16 4 C -0.09 -1.53 0.49 -51.66 -0.03 -1.55 16 5 C 0.15 4.08 4.83 86.38 0.42 4.49 16 6 N -0.72 -21.66 5.20 -478.53 -2.49 -24.15 16 7 C 0.71 29.88 8.49 179.06 1.52 31.40 16 8 O -0.65 -33.69 16.60 -4.00 -0.07 -33.75 16 9 N -0.63 -26.74 3.33 -829.60 -2.76 -29.50 16 10 C 0.11 3.54 6.15 86.74 0.53 4.08 16 11 C -0.11 -4.14 6.13 31.80 0.19 -3.95 16 12 C 0.23 11.35 0.88 -10.14 -0.01 11.34 16 13 O -0.59 -30.79 13.17 -148.98 -1.96 -32.76 16 14 C -0.55 -29.06 8.26 25.60 0.21 -28.85 16 15 H 0.07 3.56 7.78 -2.91 -0.02 3.54 16 16 C 0.02 1.26 5.29 84.65 0.45 1.71 16 17 N -0.92 -51.04 10.69 21.45 0.23 -50.81 16 18 Si 0.97 42.18 29.54 68.60 2.03 44.20 16 19 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 C 0.13 6.51 5.50 86.86 0.48 6.99 16 23 C -0.13 -1.79 7.04 31.12 0.22 -1.57 16 24 C -0.13 -1.53 7.73 31.12 0.24 -1.29 16 25 C -0.13 -2.05 6.91 31.12 0.22 -1.84 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.05 6.82 -2.38 -0.02 1.03 16 30 H 0.04 0.87 6.91 -2.39 -0.02 0.85 16 31 H 0.06 0.98 7.61 -2.39 -0.02 0.96 16 32 H 0.09 0.98 7.31 -2.39 -0.02 0.96 16 33 H 0.04 1.32 8.05 -2.38 -0.02 1.30 16 34 H 0.05 1.52 6.68 -2.39 -0.02 1.51 16 35 H 0.41 9.82 6.85 -92.71 -0.64 9.18 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.09 3.13 8.03 -2.39 -0.02 3.11 16 39 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.37 20.77 7.26 -74.06 -0.54 20.23 16 41 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.04 2.27 7.47 -2.39 -0.02 2.25 16 43 H 0.04 2.05 8.03 -2.39 -0.02 2.03 16 44 H 0.08 1.22 8.04 -2.38 -0.02 1.20 16 45 H 0.08 1.00 6.91 -2.39 -0.02 0.99 16 46 H 0.09 0.88 7.60 -2.39 -0.02 0.86 16 47 H 0.07 0.81 8.14 -2.38 -0.02 0.80 16 48 H 0.08 1.04 8.10 -2.39 -0.02 1.03 16 49 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 Total: -1.00 -67.60 380.28 0.21 -67.39 By element: Atomic # 1 Polarization: 43.18 SS G_CDS: -0.23 Total: 42.94 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 5.46 Total: 16.43 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -5.02 Total: -104.46 kcal Atomic # 8 Polarization: -64.48 SS G_CDS: -2.03 Total: -66.51 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -67.60 0.21 -67.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591987769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.686 kcal (2) G-P(sol) polarization free energy of solvation -67.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds