Wall clock time and date at job start Fri Apr 10 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46905 * 2 1 4 4 C 1.53010 * 109.46986 * 176.02913 * 3 2 1 5 5 C 1.52998 * 112.84740 * 294.82094 * 4 3 2 6 6 N 1.46502 * 109.47234 * 293.99038 * 5 4 3 7 7 C 1.34775 * 119.99983 * 175.01531 * 6 5 4 8 8 O 1.21591 * 119.99830 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99852 * 180.02562 * 7 6 5 10 10 C 1.47427 * 125.65130 * 0.03526 * 9 7 6 11 11 C 1.54903 * 104.83578 * 204.09677 * 10 9 7 12 12 C 1.55404 * 101.66549 * 323.07976 * 11 10 9 13 13 O 1.42899 * 110.69345 * 277.04606 * 12 11 10 14 14 C 1.50706 * 110.85212 * 153.70005 * 12 11 10 15 15 H 1.07998 * 120.00067 * 5.08366 * 14 12 11 16 16 C 1.37885 * 119.99653 * 185.08411 * 14 12 11 17 17 N 1.31514 * 120.00093 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99661 * 179.97438 * 16 14 12 19 19 H 1.48511 * 109.46949 * 90.00052 * 18 16 14 20 20 H 1.48496 * 109.47237 * 210.00119 * 18 16 14 21 21 H 1.48494 * 109.47451 * 330.00322 * 18 16 14 22 22 C 1.47023 * 125.64776 * 180.02562 * 9 7 6 23 23 C 1.53777 * 113.68927 * 66.08879 * 4 3 2 24 24 C 1.53779 * 87.08335 * 89.12473 * 23 4 3 25 25 C 1.53778 * 113.61526 * 163.62274 * 4 3 2 26 26 H 1.08994 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46969 * 300.00114 * 1 2 3 28 28 H 1.09001 * 109.47204 * 59.99980 * 1 2 3 29 29 H 1.08994 * 109.47288 * 240.00303 * 2 1 3 30 30 H 1.09001 * 109.47204 * 120.00020 * 2 1 3 31 31 H 1.08999 * 109.47436 * 56.03123 * 3 2 1 32 32 H 1.08996 * 109.47655 * 296.02467 * 3 2 1 33 33 H 1.08999 * 109.46844 * 173.99176 * 5 4 3 34 34 H 1.08996 * 109.47586 * 53.99590 * 5 4 3 35 35 H 0.96999 * 119.99716 * 355.01916 * 6 5 4 36 36 H 1.09004 * 110.36765 * 322.93983 * 10 9 7 37 37 H 1.09002 * 110.35914 * 85.14940 * 10 9 7 38 38 H 1.09003 * 111.00159 * 81.06475 * 11 10 9 39 39 H 1.08998 * 111.00566 * 204.91688 * 11 10 9 40 40 H 0.96703 * 113.99731 * 174.82162 * 13 12 11 41 41 H 0.96994 * 119.99634 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.87741 * 298.38849 * 22 9 7 43 43 H 1.09004 * 109.88741 * 59.39564 * 22 9 7 44 44 H 1.09005 * 113.61767 * 203.67656 * 23 4 3 45 45 H 1.09000 * 113.61559 * 334.57769 * 23 4 3 46 46 H 1.08996 * 113.61637 * 270.88296 * 24 23 4 47 47 H 1.09002 * 113.61370 * 139.97650 * 24 23 4 48 48 H 1.09006 * 113.61397 * 25.34917 * 25 4 3 49 49 H 1.08993 * 113.61536 * 156.25286 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5668 1.4437 0.0999 5 6 4.0756 0.8820 1.4290 6 7 3.6748 1.7726 2.5210 7 6 3.9269 1.4273 3.7991 8 8 4.4873 0.3768 4.0459 9 7 3.5577 2.2464 4.8037 10 6 2.8737 3.5430 4.6479 11 6 3.2254 4.3339 5.9326 12 6 3.2131 3.2106 7.0064 13 8 1.8809 2.9570 7.4567 14 6 4.1104 3.5653 8.1641 15 1 4.5874 4.5336 8.2007 16 6 4.3224 2.6536 9.1766 17 7 3.7411 1.4747 9.1322 18 14 5.4351 3.0930 10.6111 19 1 4.6297 3.7258 11.6866 20 1 6.0783 1.8610 11.1342 21 1 6.4817 4.0417 10.1533 22 6 3.7704 1.9947 6.2366 23 6 4.2669 0.8438 -1.1308 24 6 4.2521 2.2594 -1.7314 25 6 4.2084 2.7865 -0.2874 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6197 1.9765 0.8523 32 1 1.7360 1.9354 -0.9234 33 1 5.1627 0.8089 1.4001 34 1 3.6492 -0.1078 1.5922 35 1 3.2281 2.6107 2.3241 36 1 3.2466 4.0653 3.7668 37 1 1.7961 3.3967 4.5736 38 1 4.2141 4.7861 5.8545 39 1 2.4682 5.0882 6.1467 40 1 1.8077 2.2117 8.0685 41 1 3.8900 0.8336 9.8447 42 1 3.2400 1.0911 6.5369 43 1 4.8357 1.8838 6.4394 44 1 5.2689 0.4680 -0.9233 45 1 3.6514 0.1306 -1.6789 46 1 3.3519 2.4811 -2.3046 47 1 5.1680 2.5178 -2.2630 48 1 3.5456 3.6416 -0.1546 49 1 5.1943 2.9418 0.1507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591987770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:18 Heat of formation + Delta-G solvation = -75.840704 kcal Electronic energy + Delta-G solvation = -27072.407007 eV Core-core repulsion = 23420.375860 eV Total energy + Delta-G solvation = -3652.031147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38358 -39.25131 -37.27714 -34.37230 -34.21907 -33.81367 -32.20488 -30.12991 -28.75216 -27.72390 -26.50613 -25.97012 -24.75323 -22.89670 -22.32129 -21.45384 -19.64839 -19.41312 -18.37122 -17.54188 -17.02964 -16.06122 -15.67587 -15.56094 -15.13509 -14.87800 -14.61013 -14.27799 -13.93055 -13.80852 -13.50369 -13.28145 -12.90776 -12.82174 -12.70104 -12.40714 -12.20252 -11.97616 -11.84172 -11.65917 -11.54589 -11.35947 -11.22468 -11.02891 -10.98436 -10.80534 -10.64361 -10.49395 -10.45724 -10.27315 -10.15521 -10.13108 -9.55100 -9.28935 -8.73528 -8.65576 -8.29394 -7.70386 -6.25589 -4.34125 3.17004 3.24327 3.30821 3.33419 3.80744 4.24198 4.29902 4.33153 4.43736 4.60241 4.62434 4.82658 4.97287 5.02211 5.07578 5.18354 5.38998 5.40232 5.43203 5.54417 5.56444 5.64322 5.69177 5.69509 5.71201 5.75986 5.79862 5.80306 5.88432 5.97058 6.03287 6.04500 6.13561 6.20906 6.26595 6.29171 6.52920 6.74423 6.85183 6.92312 7.03742 7.30391 7.35342 7.70269 7.75781 8.06805 8.58822 8.70107 9.19566 9.31896 9.40494 10.82270 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.003122 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.868484 B = 8966.222796 C = 9224.467427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.093 4.093 4 C -0.095 4.095 5 C 0.156 3.844 6 N -0.747 5.747 7 C 0.714 3.286 8 O -0.599 6.599 9 N -0.631 5.631 10 C 0.104 3.896 11 C -0.116 4.116 12 C 0.248 3.752 13 O -0.585 6.585 14 C -0.538 4.538 15 H 0.066 0.934 16 C 0.071 3.929 17 N -0.893 5.893 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.124 3.876 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.132 4.132 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.392 0.608 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.382 0.618 41 H 0.270 0.730 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 1.520 -20.277 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.131 4.131 4 C -0.095 4.095 5 C 0.032 3.968 6 N -0.404 5.404 7 C 0.416 3.584 8 O -0.478 6.478 9 N -0.368 5.368 10 C -0.019 4.019 11 C -0.154 4.154 12 C 0.208 3.792 13 O -0.394 6.394 14 C -0.576 4.576 15 H 0.084 0.916 16 C -0.133 4.133 17 N -0.532 5.532 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C 0.002 3.998 23 C -0.164 4.164 24 C -0.177 4.177 25 C -0.170 4.170 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.226 0.774 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.232 0.768 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.775 1.005 -20.418 20.630 hybrid contribution 0.538 0.019 1.085 1.212 sum -2.237 1.024 -19.332 19.488 Atomic orbital electron populations 1.21761 0.95928 1.01571 1.01659 1.21545 0.95696 0.96749 1.02316 1.21361 0.92362 0.97347 1.01997 1.22150 0.95711 0.97409 0.94242 1.21075 0.98883 0.93388 0.83504 1.45051 1.66282 1.24732 1.04380 1.15531 0.79707 0.83226 0.79916 1.90882 1.49058 1.24637 1.83192 1.47953 1.61028 1.20418 1.07408 1.22208 0.96547 0.84525 0.98616 1.22761 1.01381 0.97941 0.93340 1.19550 0.81267 0.88125 0.90268 1.86103 1.29677 1.56344 1.67250 1.21485 1.28906 1.01553 1.05638 0.91578 1.25074 0.95364 0.94546 0.98296 1.69704 1.43467 1.06120 1.33860 0.86407 0.80538 0.78022 0.81962 1.20412 1.21013 1.19732 1.22825 1.01349 1.00761 0.74911 1.22940 1.00822 0.96762 0.95888 1.22795 1.01882 0.96611 0.96438 1.22985 1.01271 0.96390 0.96339 0.92853 0.92638 0.93028 0.92038 0.91490 0.91526 0.91735 0.92288 0.91554 0.77443 0.92765 0.92146 0.90558 0.90667 0.76801 0.92020 0.91997 0.91859 0.89842 0.91104 0.90279 0.91567 0.91413 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.15 5.62 -26.73 -0.15 -1.30 16 3 C -0.09 -0.82 4.51 -26.73 -0.12 -0.94 16 4 C -0.09 -0.88 0.48 -153.70 -0.07 -0.95 16 5 C 0.16 2.02 4.85 -4.04 -0.02 2.00 16 6 N -0.75 -11.25 5.17 -65.23 -0.34 -11.59 16 7 C 0.71 14.70 8.49 -86.92 -0.74 13.96 16 8 O -0.60 -14.78 16.67 5.29 0.09 -14.69 16 9 N -0.63 -13.24 3.33 -176.24 -0.59 -13.82 16 10 C 0.10 1.83 6.57 -2.53 -0.02 1.81 16 11 C -0.12 -2.31 6.24 -24.45 -0.15 -2.46 16 12 C 0.25 6.03 0.86 -89.80 -0.08 5.95 16 13 O -0.59 -14.71 13.08 -35.23 -0.46 -15.17 16 14 C -0.54 -14.14 8.13 -34.43 -0.28 -14.42 16 15 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 16 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 17 N -0.89 -24.04 10.98 55.43 0.61 -23.43 16 18 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.12 3.06 5.23 -3.07 -0.02 3.04 16 23 C -0.13 -1.01 7.06 -25.92 -0.18 -1.19 16 24 C -0.14 -1.02 7.73 -25.92 -0.20 -1.22 16 25 C -0.13 -1.12 6.92 -25.92 -0.18 -1.30 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 30 H 0.07 0.74 6.56 -51.93 -0.34 0.40 16 31 H 0.07 0.65 7.55 -51.93 -0.39 0.26 16 32 H 0.06 0.50 7.31 -51.93 -0.38 0.12 16 33 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 34 H 0.07 0.95 6.58 -51.93 -0.34 0.61 16 35 H 0.39 5.03 6.34 -40.82 -0.26 4.77 16 36 H 0.05 0.76 7.30 -51.93 -0.38 0.39 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.38 9.85 7.47 45.56 0.34 10.19 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.06 1.68 7.92 -51.93 -0.41 1.27 16 43 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 44 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 45 H 0.07 0.53 6.84 -51.93 -0.36 0.17 16 46 H 0.08 0.53 7.61 -51.93 -0.40 0.13 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 49 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -29.98 379.47 -9.78 -39.75 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -7.85 Total: 13.83 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.93 Total: 3.80 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.31 Total: -48.84 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.37 Total: -29.86 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.98 -9.78 -39.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591987770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.088 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds