Wall clock time and date at job start Fri Apr 10 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46905 * 2 1 4 4 C 1.53010 * 109.46986 * 176.02913 * 3 2 1 5 5 C 1.52998 * 112.84740 * 294.82094 * 4 3 2 6 6 N 1.46502 * 109.47234 * 293.99038 * 5 4 3 7 7 C 1.34775 * 119.99983 * 175.01531 * 6 5 4 8 8 O 1.21591 * 119.99830 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99852 * 180.02562 * 7 6 5 10 10 C 1.47427 * 125.65130 * 0.03526 * 9 7 6 11 11 C 1.54903 * 104.83578 * 204.09677 * 10 9 7 12 12 C 1.55404 * 101.66549 * 323.07976 * 11 10 9 13 13 O 1.42899 * 110.69345 * 277.04606 * 12 11 10 14 14 C 1.50706 * 110.85212 * 153.70005 * 12 11 10 15 15 H 1.07998 * 120.00067 * 5.08366 * 14 12 11 16 16 C 1.37885 * 119.99653 * 185.08411 * 14 12 11 17 17 N 1.31514 * 120.00093 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99661 * 179.97438 * 16 14 12 19 19 H 1.48511 * 109.46949 * 90.00052 * 18 16 14 20 20 H 1.48496 * 109.47237 * 210.00119 * 18 16 14 21 21 H 1.48494 * 109.47451 * 330.00322 * 18 16 14 22 22 C 1.47023 * 125.64776 * 180.02562 * 9 7 6 23 23 C 1.53777 * 113.68927 * 66.08879 * 4 3 2 24 24 C 1.53779 * 87.08335 * 89.12473 * 23 4 3 25 25 C 1.53778 * 113.61526 * 163.62274 * 4 3 2 26 26 H 1.08994 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46969 * 300.00114 * 1 2 3 28 28 H 1.09001 * 109.47204 * 59.99980 * 1 2 3 29 29 H 1.08994 * 109.47288 * 240.00303 * 2 1 3 30 30 H 1.09001 * 109.47204 * 120.00020 * 2 1 3 31 31 H 1.08999 * 109.47436 * 56.03123 * 3 2 1 32 32 H 1.08996 * 109.47655 * 296.02467 * 3 2 1 33 33 H 1.08999 * 109.46844 * 173.99176 * 5 4 3 34 34 H 1.08996 * 109.47586 * 53.99590 * 5 4 3 35 35 H 0.96999 * 119.99716 * 355.01916 * 6 5 4 36 36 H 1.09004 * 110.36765 * 322.93983 * 10 9 7 37 37 H 1.09002 * 110.35914 * 85.14940 * 10 9 7 38 38 H 1.09003 * 111.00159 * 81.06475 * 11 10 9 39 39 H 1.08998 * 111.00566 * 204.91688 * 11 10 9 40 40 H 0.96703 * 113.99731 * 174.82162 * 13 12 11 41 41 H 0.96994 * 119.99634 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.87741 * 298.38849 * 22 9 7 43 43 H 1.09004 * 109.88741 * 59.39564 * 22 9 7 44 44 H 1.09005 * 113.61767 * 203.67656 * 23 4 3 45 45 H 1.09000 * 113.61559 * 334.57769 * 23 4 3 46 46 H 1.08996 * 113.61637 * 270.88296 * 24 23 4 47 47 H 1.09002 * 113.61370 * 139.97650 * 24 23 4 48 48 H 1.09006 * 113.61397 * 25.34917 * 25 4 3 49 49 H 1.08993 * 113.61536 * 156.25286 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5668 1.4437 0.0999 5 6 4.0756 0.8820 1.4290 6 7 3.6748 1.7726 2.5210 7 6 3.9269 1.4273 3.7991 8 8 4.4873 0.3768 4.0459 9 7 3.5577 2.2464 4.8037 10 6 2.8737 3.5430 4.6479 11 6 3.2254 4.3339 5.9326 12 6 3.2131 3.2106 7.0064 13 8 1.8809 2.9570 7.4567 14 6 4.1104 3.5653 8.1641 15 1 4.5874 4.5336 8.2007 16 6 4.3224 2.6536 9.1766 17 7 3.7411 1.4747 9.1322 18 14 5.4351 3.0930 10.6111 19 1 4.6297 3.7258 11.6866 20 1 6.0783 1.8610 11.1342 21 1 6.4817 4.0417 10.1533 22 6 3.7704 1.9947 6.2366 23 6 4.2669 0.8438 -1.1308 24 6 4.2521 2.2594 -1.7314 25 6 4.2084 2.7865 -0.2874 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6197 1.9765 0.8523 32 1 1.7360 1.9354 -0.9234 33 1 5.1627 0.8089 1.4001 34 1 3.6492 -0.1078 1.5922 35 1 3.2281 2.6107 2.3241 36 1 3.2466 4.0653 3.7668 37 1 1.7961 3.3967 4.5736 38 1 4.2141 4.7861 5.8545 39 1 2.4682 5.0882 6.1467 40 1 1.8077 2.2117 8.0685 41 1 3.8900 0.8336 9.8447 42 1 3.2400 1.0911 6.5369 43 1 4.8357 1.8838 6.4394 44 1 5.2689 0.4680 -0.9233 45 1 3.6514 0.1306 -1.6789 46 1 3.3519 2.4811 -2.3046 47 1 5.1680 2.5178 -2.2630 48 1 3.5456 3.6416 -0.1546 49 1 5.1943 2.9418 0.1507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591987770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:17 Heat of formation + Delta-G solvation = -95.446809 kcal Electronic energy + Delta-G solvation = -27073.257192 eV Core-core repulsion = 23420.375860 eV Total energy + Delta-G solvation = -3652.881332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51324 -40.56788 -39.02115 -36.06842 -35.39648 -34.88556 -34.23546 -31.78718 -29.91351 -29.32664 -27.63614 -26.71696 -26.39867 -24.27870 -23.35792 -22.18921 -21.45420 -20.98594 -19.45509 -19.05061 -18.68661 -17.49427 -16.95507 -16.83430 -16.56873 -16.29374 -16.02222 -15.55946 -15.09232 -14.99877 -14.75656 -14.66659 -14.49312 -14.26623 -13.80714 -13.60856 -13.50731 -13.29045 -13.10783 -12.85954 -12.83910 -12.57900 -12.51476 -12.33710 -12.28129 -12.21148 -12.08639 -11.88209 -11.74637 -11.34491 -11.18032 -11.16210 -10.94099 -10.87937 -10.65282 -10.29655 -10.19453 -9.38434 -8.26285 -6.42280 1.40918 1.42984 1.52655 1.68395 2.14879 2.37845 3.00523 3.06179 3.56588 3.65074 3.74693 3.79799 4.00087 4.03570 4.07535 4.17108 4.24618 4.36019 4.37889 4.50235 4.55440 4.58255 4.70227 4.71971 4.80563 4.90040 4.91914 4.96369 4.97896 5.05338 5.06468 5.12526 5.14151 5.16848 5.24856 5.28325 5.34404 5.35836 5.48194 5.50066 5.50584 5.56785 5.63776 5.74354 6.03624 6.18879 6.64792 7.07175 7.27146 7.34658 7.57694 8.79875 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022361 B = 0.003122 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.868484 B = 8966.222796 C = 9224.467427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.089 4.089 4 C -0.090 4.090 5 C 0.155 3.845 6 N -0.722 5.722 7 C 0.708 3.292 8 O -0.648 6.648 9 N -0.636 5.636 10 C 0.109 3.891 11 C -0.110 4.110 12 C 0.234 3.766 13 O -0.586 6.586 14 C -0.557 4.557 15 H 0.068 0.932 16 C 0.025 3.975 17 N -0.916 5.916 18 Si 0.964 3.036 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.143 3.857 23 C -0.126 4.126 24 C -0.129 4.129 25 C -0.133 4.133 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.407 0.593 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.374 0.626 41 H 0.269 0.731 42 H 0.025 0.975 43 H 0.027 0.973 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.474 3.597 -22.626 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.127 4.127 4 C -0.091 4.091 5 C 0.031 3.969 6 N -0.378 5.378 7 C 0.410 3.590 8 O -0.531 6.531 9 N -0.373 5.373 10 C -0.013 4.013 11 C -0.148 4.148 12 C 0.193 3.807 13 O -0.394 6.394 14 C -0.596 4.596 15 H 0.086 0.914 16 C -0.176 4.176 17 N -0.555 5.555 18 Si 0.789 3.211 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.191 1.191 22 C 0.019 3.981 23 C -0.164 4.164 24 C -0.166 4.166 25 C -0.170 4.170 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.244 0.756 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.223 0.777 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.111 0.889 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.202 3.137 -22.826 23.262 hybrid contribution 0.663 -0.677 1.787 2.023 sum -2.539 2.460 -21.039 21.334 Atomic orbital electron populations 1.21753 0.95467 1.01698 1.01898 1.21531 0.96102 0.97048 1.01599 1.21351 0.91598 0.96995 1.02711 1.22155 0.96281 0.98416 0.92218 1.21241 0.98359 0.92687 0.84645 1.44862 1.64936 1.25353 1.02678 1.15789 0.79385 0.82553 0.81268 1.90843 1.51202 1.26815 1.84193 1.47889 1.61480 1.21913 1.05988 1.22384 0.97014 0.82584 0.99337 1.22757 1.02485 0.97029 0.92518 1.19757 0.80537 0.89443 0.90933 1.86093 1.30300 1.55944 1.67051 1.21837 1.29464 1.01685 1.06577 0.91383 1.25837 0.96612 0.94463 1.00722 1.69819 1.44430 1.06820 1.34434 0.85466 0.78927 0.77631 0.79094 1.19679 1.21236 1.19118 1.22311 0.98394 0.99735 0.77640 1.22964 1.00552 0.97752 0.95105 1.22769 1.02926 0.95219 0.95725 1.22993 1.00847 0.95995 0.97194 0.92883 0.93697 0.91414 0.90852 0.94138 0.92343 0.89563 0.93264 0.93283 0.75637 0.88199 0.91145 0.89872 0.89007 0.77657 0.92149 0.95671 0.95461 0.90316 0.90215 0.88884 0.90901 0.90304 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.67 16 2 C -0.13 -2.12 5.62 30.59 0.17 -1.95 16 3 C -0.09 -1.35 4.51 30.60 0.14 -1.21 16 4 C -0.09 -1.49 0.48 -51.65 -0.02 -1.51 16 5 C 0.15 3.96 4.85 86.38 0.42 4.38 16 6 N -0.72 -21.10 5.17 -478.54 -2.47 -23.57 16 7 C 0.71 29.51 8.49 179.06 1.52 31.03 16 8 O -0.65 -33.35 16.67 -4.00 -0.07 -33.41 16 9 N -0.64 -26.75 3.33 -829.76 -2.76 -29.51 16 10 C 0.11 3.55 6.57 86.85 0.57 4.12 16 11 C -0.11 -4.17 6.24 32.07 0.20 -3.97 16 12 C 0.23 11.44 0.86 -10.26 -0.01 11.43 16 13 O -0.59 -29.85 13.08 -148.98 -1.95 -31.79 16 14 C -0.56 -29.59 8.13 25.60 0.21 -29.38 16 15 H 0.07 3.50 7.78 -2.91 -0.02 3.47 16 16 C 0.02 1.31 5.28 84.66 0.45 1.76 16 17 N -0.92 -50.94 10.98 21.45 0.24 -50.70 16 18 Si 0.96 42.65 29.54 68.60 2.03 44.67 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 C 0.14 7.36 5.23 86.73 0.45 7.81 16 23 C -0.13 -1.72 7.06 31.12 0.22 -1.51 16 24 C -0.13 -1.44 7.73 31.12 0.24 -1.20 16 25 C -0.13 -1.86 6.92 31.12 0.22 -1.65 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.06 6.92 -2.39 -0.02 1.04 16 30 H 0.04 0.90 6.56 -2.39 -0.02 0.88 16 31 H 0.06 0.99 7.55 -2.39 -0.02 0.97 16 32 H 0.09 0.99 7.31 -2.39 -0.02 0.97 16 33 H 0.05 1.37 8.05 -2.39 -0.02 1.35 16 34 H 0.05 1.45 6.58 -2.39 -0.02 1.43 16 35 H 0.41 9.44 6.34 -92.71 -0.59 8.85 16 36 H 0.10 2.39 7.30 -2.38 -0.02 2.37 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.08 3.02 8.04 -2.39 -0.02 3.01 16 39 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.37 20.01 7.47 -74.06 -0.55 19.46 16 41 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 42 H 0.02 1.44 7.92 -2.39 -0.02 1.42 16 43 H 0.03 1.55 7.81 -2.39 -0.02 1.54 16 44 H 0.08 1.17 8.04 -2.38 -0.02 1.15 16 45 H 0.08 0.97 6.84 -2.39 -0.02 0.95 16 46 H 0.09 0.82 7.61 -2.39 -0.02 0.81 16 47 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.08 0.96 8.10 -2.38 -0.02 0.94 16 49 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -67.91 379.47 0.30 -67.62 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -0.20 Total: 40.22 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 5.48 Total: 16.48 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -5.00 Total: -103.79 kcal Atomic # 8 Polarization: -63.19 SS G_CDS: -2.02 Total: -65.21 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -67.91 0.30 -67.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591987770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.830 kcal (2) G-P(sol) polarization free energy of solvation -67.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds