Wall clock time and date at job start Fri Apr 10 2020 22:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46766 * 2 1 4 4 C 1.52999 * 109.46769 * 119.99675 * 2 1 3 5 5 C 1.52994 * 109.47409 * 300.00084 * 4 2 1 6 6 N 1.46507 * 109.46925 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99662 * 180.02562 * 6 5 4 8 8 O 1.21590 * 119.99977 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99817 * 180.02562 * 7 6 5 10 10 C 1.47021 * 125.64937 * 359.94913 * 9 7 6 11 11 C 1.54370 * 107.28813 * 181.13182 * 10 9 7 12 12 C 1.55147 * 102.92092 * 22.14333 * 11 10 9 13 13 O 1.42905 * 111.00578 * 82.63751 * 12 11 10 14 14 C 1.50702 * 111.00308 * 206.45025 * 12 11 10 15 15 H 1.08002 * 120.00299 * 356.82421 * 14 12 11 16 16 C 1.37884 * 119.99942 * 176.53980 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.47423 * 125.64837 * 179.97438 * 9 7 6 23 23 C 1.52994 * 109.47224 * 239.99873 * 2 1 3 24 24 C 1.52998 * 117.49696 * 128.74581 * 23 2 1 25 25 C 1.53006 * 117.49911 * 60.08517 * 23 2 1 26 26 H 1.08996 * 109.47308 * 299.99653 * 1 2 3 27 27 H 1.08997 * 109.46891 * 60.00299 * 1 2 3 28 28 H 1.09007 * 109.46587 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47144 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47418 * 299.99948 * 3 2 1 31 31 H 1.09007 * 109.47423 * 60.00152 * 3 2 1 32 32 H 1.09006 * 109.46854 * 180.02562 * 4 2 1 33 33 H 1.09007 * 109.47271 * 60.00780 * 4 2 1 34 34 H 1.08997 * 109.47000 * 60.00520 * 5 4 2 35 35 H 1.08997 * 109.47537 * 299.99984 * 5 4 2 36 36 H 0.96995 * 120.00225 * 0.02562 * 6 5 4 37 37 H 1.09001 * 109.88518 * 300.52094 * 10 9 7 38 38 H 1.09002 * 109.88165 * 61.68403 * 10 9 7 39 39 H 1.09001 * 110.70699 * 263.79361 * 11 10 9 40 40 H 1.09008 * 110.75075 * 140.51110 * 11 10 9 41 41 H 0.96701 * 113.99475 * 183.17547 * 13 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 43 43 H 1.08996 * 110.36708 * 36.99367 * 22 9 7 44 44 H 1.09002 * 110.46021 * 274.71461 * 22 9 7 45 45 H 1.09006 * 115.55304 * 274.41556 * 23 2 1 46 46 H 1.08992 * 117.50054 * 359.97438 * 24 23 2 47 47 H 1.09001 * 117.49990 * 145.02435 * 24 23 2 48 48 H 1.09000 * 117.49627 * 214.97502 * 25 23 2 49 49 H 1.09000 * 117.49494 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 0.0001 2.4985 6 7 2.0188 -0.6903 3.6947 7 6 1.6928 -0.2300 4.9188 8 8 0.9935 0.7584 5.0303 9 7 2.1429 -0.8647 6.0192 10 6 2.9922 -2.0647 6.0291 11 6 3.2285 -2.4473 7.5059 12 6 2.0358 -1.7732 8.2340 13 8 0.8629 -2.5859 8.1567 14 6 2.3826 -1.4654 9.6680 15 1 3.3407 -1.7630 10.0677 16 6 1.4790 -0.7985 10.4679 17 7 0.3123 -0.4360 9.9811 18 14 1.9119 -0.4102 12.2430 19 1 3.2736 -0.9205 12.5435 20 1 1.8777 1.0599 12.4506 21 1 0.9286 -1.0605 13.1461 22 6 1.8647 -0.4709 7.4124 23 6 2.0401 -0.7212 -1.2492 24 6 3.0764 0.0040 -2.1100 25 6 1.6375 -0.1484 -2.6096 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7208 1.2495 33 1 1.6767 -1.7489 1.2493 34 1 0.4400 0.0000 2.4985 35 1 1.8933 1.0277 2.4985 36 1 2.5770 -1.4785 3.6057 37 1 2.4873 -2.8805 5.5117 38 1 3.9446 -1.8489 5.5448 39 1 4.1761 -2.0430 7.8619 40 1 3.1971 -3.5294 7.6343 41 1 0.0791 -2.1841 8.5556 42 1 -0.3236 0.0328 10.5439 43 1 0.8456 -0.0956 7.5043 44 1 2.5776 0.2839 7.7446 45 1 2.1254 -1.8047 -1.1647 46 1 3.3944 0.9950 -1.7866 47 1 3.8432 -0.6023 -2.5921 48 1 1.4584 -0.8548 -3.4201 49 1 1.0089 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592028625.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:19 Heat of formation + Delta-G solvation = -86.153075 kcal Electronic energy + Delta-G solvation = -26444.255743 eV Core-core repulsion = 22791.777417 eV Total energy + Delta-G solvation = -3652.478325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27711 -40.17766 -39.06414 -36.48888 -36.03864 -34.31987 -34.18704 -31.80738 -29.82014 -29.22132 -28.31840 -26.98244 -25.67951 -24.12335 -23.01641 -22.44180 -21.44326 -21.04039 -19.36411 -19.07232 -18.67274 -17.59052 -17.06465 -16.99121 -16.53270 -16.20920 -15.96880 -15.74094 -15.21308 -14.92849 -14.85115 -14.63628 -14.40358 -14.04668 -13.77214 -13.50549 -13.44472 -13.27914 -12.97461 -12.85706 -12.81166 -12.50857 -12.43662 -12.30863 -12.19106 -12.08355 -12.03018 -11.90182 -11.79534 -11.37419 -11.34955 -11.20045 -10.95810 -10.70372 -10.65493 -10.32111 -10.13857 -9.30073 -8.24420 -6.41434 1.41242 1.44557 1.55559 1.71115 2.16811 2.38796 2.96436 3.01836 3.12773 3.61810 3.81238 3.86279 3.98567 4.10241 4.15840 4.18184 4.21346 4.28400 4.35315 4.37384 4.46573 4.60602 4.63740 4.68976 4.77296 4.80380 4.87313 4.98181 5.01735 5.04766 5.07375 5.10568 5.11423 5.17429 5.18637 5.31917 5.34809 5.39537 5.40934 5.46272 5.47222 5.52516 5.58387 5.77345 6.05116 6.20990 6.66426 7.09020 7.29880 7.36924 7.59389 8.81230 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034745 B = 0.002479 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.670416 B =11291.782380 C =11547.890574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.024 4.024 3 C -0.150 4.150 4 C -0.106 4.106 5 C 0.136 3.864 6 N -0.730 5.730 7 C 0.707 3.293 8 O -0.647 6.647 9 N -0.634 5.634 10 C 0.107 3.893 11 C -0.111 4.111 12 C 0.231 3.769 13 O -0.588 6.588 14 C -0.554 4.554 15 H 0.071 0.929 16 C 0.023 3.977 17 N -0.918 5.918 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.280 1.280 22 C 0.126 3.874 23 C -0.144 4.144 24 C -0.184 4.184 25 C -0.179 4.179 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.409 0.591 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.374 0.626 42 H 0.269 0.731 43 H 0.039 0.961 44 H 0.040 0.960 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 -2.437 -22.614 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 C -0.207 4.207 4 C -0.144 4.144 5 C 0.013 3.987 6 N -0.387 5.387 7 C 0.409 3.591 8 O -0.530 6.530 9 N -0.370 5.370 10 C -0.015 4.015 11 C -0.148 4.148 12 C 0.191 3.809 13 O -0.397 6.397 14 C -0.592 4.592 15 H 0.089 0.911 16 C -0.177 4.177 17 N -0.557 5.557 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.206 1.206 22 C 0.002 3.998 23 C -0.162 4.162 24 C -0.221 4.221 25 C -0.216 4.216 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.224 0.776 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.297 -2.015 -22.891 23.826 hybrid contribution -0.540 0.670 1.513 1.741 sum 5.757 -1.345 -21.377 22.180 Atomic orbital electron populations 1.21941 0.94517 1.02130 1.01635 1.19904 0.95242 0.94825 0.92499 1.22093 1.01527 0.95372 1.01718 1.21747 1.01844 0.99614 0.91154 1.21411 0.98515 0.96068 0.82750 1.44982 1.56789 1.33720 1.03173 1.15800 0.80079 0.82299 0.80909 1.90840 1.45464 1.30233 1.86504 1.47855 1.53515 1.30488 1.05174 1.22128 0.94382 0.86488 0.98476 1.22609 0.97803 1.01596 0.92820 1.19883 0.83521 0.85396 0.92109 1.86068 1.21868 1.48654 1.83070 1.21852 1.02935 1.37896 0.96512 0.91102 1.25870 0.94755 0.94114 1.03010 1.69798 1.07938 1.39948 1.38016 0.85388 0.78699 0.77527 0.79290 1.18594 1.20979 1.20588 1.22675 0.98882 0.99675 0.78551 1.22271 1.04182 0.99042 0.90727 1.23211 0.92577 1.02657 1.03670 1.22995 0.98222 1.03376 0.97017 0.93506 0.91874 0.92258 0.91605 0.91887 0.93396 0.89931 0.90192 0.93132 0.92714 0.75505 0.90895 0.89088 0.89207 0.89566 0.77641 0.92163 0.94252 0.94190 0.87401 0.88138 0.88461 0.88367 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 7.96 71.98 0.57 -1.81 16 2 C -0.02 -0.36 0.65 -52.18 -0.03 -0.39 16 3 C -0.15 -2.33 6.72 71.98 0.48 -1.84 16 4 C -0.11 -1.73 4.37 30.59 0.13 -1.60 16 5 C 0.14 3.43 4.97 86.38 0.43 3.86 16 6 N -0.73 -21.44 5.52 -478.53 -2.64 -24.08 16 7 C 0.71 29.58 8.49 179.05 1.52 31.10 16 8 O -0.65 -33.34 16.60 -4.00 -0.07 -33.41 16 9 N -0.63 -26.52 3.33 -829.62 -2.76 -29.28 16 10 C 0.11 3.46 6.15 86.75 0.53 3.99 16 11 C -0.11 -4.13 6.13 31.80 0.19 -3.94 16 12 C 0.23 11.29 0.88 -10.14 -0.01 11.28 16 13 O -0.59 -30.72 13.17 -148.98 -1.96 -32.68 16 14 C -0.55 -28.90 8.26 25.60 0.21 -28.69 16 15 H 0.07 3.56 7.78 -2.91 -0.02 3.53 16 16 C 0.02 1.22 5.29 84.66 0.45 1.67 16 17 N -0.92 -50.92 10.69 21.45 0.23 -50.69 16 18 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 22 C 0.13 6.36 5.50 86.86 0.48 6.84 16 23 C -0.14 -1.81 5.14 -10.79 -0.06 -1.86 16 24 C -0.18 -2.11 9.57 30.62 0.29 -1.82 16 25 C -0.18 -2.06 9.39 30.62 0.29 -1.78 16 26 H 0.05 0.92 6.43 -2.39 -0.02 0.90 16 27 H 0.06 0.92 7.29 -2.39 -0.02 0.91 16 28 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.07 0.94 6.97 -2.39 -0.02 0.92 16 30 H 0.06 0.87 7.07 -2.39 -0.02 0.86 16 31 H 0.05 0.90 6.43 -2.38 -0.02 0.88 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.05 1.45 6.43 -2.39 -0.02 1.43 16 35 H 0.05 1.51 6.43 -2.39 -0.02 1.49 16 36 H 0.41 9.26 7.46 -92.71 -0.69 8.56 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.09 3.11 8.03 -2.39 -0.02 3.09 16 40 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 41 H 0.37 20.71 7.26 -74.06 -0.54 20.17 16 42 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 43 H 0.04 2.30 7.47 -2.39 -0.02 2.28 16 44 H 0.04 2.09 8.03 -2.39 -0.02 2.07 16 45 H 0.11 1.27 8.11 -2.38 -0.02 1.26 16 46 H 0.10 1.16 5.85 -2.39 -0.01 1.15 16 47 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 48 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.09 1.09 7.07 -2.39 -0.02 1.07 16 Total: -1.00 -67.67 377.18 0.04 -67.63 By element: Atomic # 1 Polarization: 43.66 SS G_CDS: -0.28 Total: 43.38 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 5.49 Total: 15.01 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -5.17 Total: -104.04 kcal Atomic # 8 Polarization: -64.07 SS G_CDS: -2.03 Total: -66.09 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -67.67 0.04 -67.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592028625.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.523 kcal (2) G-P(sol) polarization free energy of solvation -67.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds