Wall clock time and date at job start Fri Apr 10 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.53006 * 109.46997 * 60.00177 * 4 2 1 6 6 N 1.46500 * 109.47373 * 180.02562 * 5 4 2 7 7 C 1.34769 * 120.00237 * 179.97438 * 6 5 4 8 8 O 1.21595 * 119.99869 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00578 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.64008 * 359.69959 * 9 7 6 11 11 C 1.54337 * 107.26165 * 178.84927 * 10 9 7 12 12 C 1.55156 * 103.02013 * 338.13442 * 11 10 9 13 13 O 1.42894 * 111.00544 * 277.23504 * 12 11 10 14 14 C 1.50702 * 111.03793 * 153.39350 * 12 11 10 15 15 H 1.08005 * 119.99978 * 6.33787 * 14 12 11 16 16 C 1.37879 * 120.00229 * 186.33295 * 14 12 11 17 17 N 1.31508 * 119.99626 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00092 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47173 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47360 * 119.99560 * 18 16 14 21 21 H 1.48499 * 109.46965 * 240.00051 * 18 16 14 22 22 C 1.47424 * 125.65332 * 180.02562 * 9 7 6 23 23 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 24 24 C 1.53001 * 117.49866 * 8.61877 * 23 2 1 25 25 C 1.53000 * 117.49497 * 299.99468 * 23 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 34 34 H 1.09000 * 109.46866 * 300.00212 * 5 4 2 35 35 H 1.08996 * 109.47261 * 59.99820 * 5 4 2 36 36 H 0.97003 * 119.99531 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.87935 * 298.38692 * 10 9 7 38 38 H 1.08998 * 109.88572 * 59.55697 * 10 9 7 39 39 H 1.08999 * 110.85082 * 219.66931 * 11 10 9 40 40 H 1.09003 * 110.51755 * 96.44744 * 11 10 9 41 41 H 0.96708 * 114.00214 * 173.64535 * 13 12 11 42 42 H 0.97009 * 119.99861 * 180.02562 * 17 16 14 43 43 H 1.09005 * 110.36387 * 322.93496 * 22 9 7 44 44 H 1.08997 * 110.36326 * 85.14532 * 22 9 7 45 45 H 1.09004 * 115.54851 * 154.33029 * 23 2 1 46 46 H 1.09004 * 117.49834 * 0.02562 * 24 23 2 47 47 H 1.08995 * 117.49577 * 145.02406 * 24 23 2 48 48 H 1.08998 * 117.49694 * 214.97781 * 25 23 2 49 49 H 1.08998 * 117.50118 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 0.0000 -2.4985 6 7 2.0179 -0.6909 -3.6947 7 6 1.6918 -0.2308 -4.9187 8 8 0.9931 0.7581 -5.0303 9 7 2.1410 -0.8661 -6.0193 10 6 2.9954 -2.0625 -6.0290 11 6 3.2278 -2.4473 -7.5055 12 6 2.0343 -1.7748 -8.2340 13 8 0.8623 -2.5884 -8.1559 14 6 2.3800 -1.4666 -9.6681 15 1 3.3170 -1.8077 -10.0830 16 6 1.5001 -0.7494 -10.4506 17 7 0.3593 -0.3337 -9.9452 18 14 1.9283 -0.3681 -12.2284 19 1 3.2591 -0.9425 -12.5512 20 1 0.9023 -0.9616 -13.1230 21 1 1.9642 1.1035 -12.4242 22 6 1.8626 -0.4725 -7.4125 23 6 2.0400 -0.7214 1.2492 24 6 1.0104 -1.4542 2.1117 25 6 1.6358 -0.1496 2.6096 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7489 -1.2493 34 1 0.4400 0.0000 -2.4985 35 1 1.8933 1.0277 -2.4985 36 1 2.5750 -1.4800 -3.6056 37 1 3.9479 -1.8418 -5.5472 38 1 2.4952 -2.8796 -5.5092 39 1 3.1977 -3.5293 -7.6338 40 1 4.1749 -2.0419 -7.8615 41 1 0.0671 -2.1681 -8.5113 42 1 -0.2600 0.1706 -10.4959 43 1 0.8432 -0.0977 -7.5042 44 1 2.5751 0.2833 -7.7426 45 1 3.0324 -1.1642 1.1642 46 1 -0.0303 -1.4228 1.7889 47 1 1.3253 -2.3795 2.5941 48 1 2.3620 -0.2166 3.4196 49 1 1.0069 0.7407 2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592028626.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:23 Heat of formation + Delta-G solvation = -66.006930 kcal Electronic energy + Delta-G solvation = -26454.488412 eV Core-core repulsion = 22802.883689 eV Total energy + Delta-G solvation = -3651.604723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85772 -39.26896 -37.37555 -35.42808 -34.18278 -33.23664 -32.20196 -30.16919 -28.55819 -27.63825 -27.61641 -25.41881 -24.49116 -22.59129 -22.48584 -21.55211 -19.64501 -19.52743 -18.42356 -17.45577 -16.97101 -16.62299 -15.60123 -15.53556 -15.05280 -14.91648 -14.68889 -14.39754 -14.08239 -13.76321 -13.53353 -13.03282 -12.97217 -12.83650 -12.64219 -12.22713 -12.11855 -11.97245 -11.78082 -11.62315 -11.46665 -11.27241 -11.23021 -11.05949 -11.02265 -10.78767 -10.68299 -10.56553 -10.44276 -10.38754 -10.16015 -10.12227 -9.55354 -9.33349 -8.73243 -8.67078 -8.31759 -7.63506 -6.24784 -4.34512 3.17204 3.23151 3.30583 3.33821 3.53812 3.81599 4.25582 4.29237 4.45523 4.59010 4.67590 4.75452 4.88188 4.92395 5.02362 5.16097 5.23005 5.34093 5.35856 5.44150 5.50790 5.52014 5.57404 5.67631 5.75142 5.76297 5.79276 5.81709 5.84776 5.92338 5.94199 6.04491 6.05013 6.15236 6.22558 6.23614 6.54090 6.73512 6.85510 6.92249 7.01969 7.27362 7.36567 7.70637 7.77428 8.06738 8.59429 8.70555 9.20038 9.33071 9.41172 10.82217 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034291 B = 0.002492 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.353582 B =11232.845833 C =11499.374173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 C -0.145 4.145 4 C -0.118 4.118 5 C 0.137 3.863 6 N -0.753 5.753 7 C 0.715 3.285 8 O -0.598 6.598 9 N -0.629 5.629 10 C 0.106 3.894 11 C -0.116 4.116 12 C 0.248 3.752 13 O -0.583 6.583 14 C -0.537 4.537 15 H 0.067 0.933 16 C 0.070 3.930 17 N -0.891 5.891 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.114 3.886 23 C -0.140 4.140 24 C -0.185 4.185 25 C -0.180 4.180 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.392 0.608 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.381 0.619 42 H 0.269 0.731 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -1.564 21.129 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 C -0.202 4.202 4 C -0.156 4.156 5 C 0.013 3.987 6 N -0.410 5.410 7 C 0.417 3.583 8 O -0.477 6.477 9 N -0.366 5.366 10 C -0.018 4.018 11 C -0.154 4.154 12 C 0.207 3.793 13 O -0.391 6.391 14 C -0.575 4.575 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.530 5.530 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.008 4.008 23 C -0.159 4.159 24 C -0.222 4.222 25 C -0.217 4.217 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.225 0.775 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.231 0.769 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.684 -1.092 21.327 21.671 hybrid contribution 0.118 0.254 -1.066 1.102 sum 3.803 -0.838 20.261 20.632 Atomic orbital electron populations 1.22108 0.94464 1.02117 1.02154 1.19953 0.95480 0.95032 0.92375 1.21940 1.01179 0.94990 1.02076 1.21807 1.01055 0.99751 0.92960 1.21262 0.99216 0.96007 0.82261 1.45137 1.57767 1.33529 1.04530 1.15531 0.80391 0.82709 0.79664 1.90881 1.43350 1.27881 1.85608 1.47935 1.52644 1.29549 1.06467 1.21916 0.92911 0.87613 0.99349 1.22589 0.99576 1.01112 0.92104 1.19642 0.82539 0.84927 0.92175 1.86098 1.20545 1.46632 1.85851 1.21491 1.04977 1.35501 0.95555 0.91513 1.25088 0.94747 0.94318 0.99149 1.69735 1.09088 1.37251 1.36904 0.86359 0.78607 0.78068 0.83913 1.19612 1.20780 1.20799 1.23121 1.02208 0.99668 0.75833 1.22332 0.99254 1.03188 0.91087 1.23149 0.99249 0.95832 1.03994 1.22926 1.03921 0.97605 0.97230 0.91744 0.92621 0.92122 0.92628 0.92526 0.91854 0.91300 0.91158 0.91727 0.91744 0.77504 0.93211 0.92739 0.90814 0.90465 0.76930 0.92077 0.89683 0.92561 0.87948 0.88068 0.89226 0.89153 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 6.72 37.16 0.25 -1.04 16 2 C -0.03 -0.23 0.65 -154.51 -0.10 -0.33 16 3 C -0.14 -1.22 7.96 37.15 0.30 -0.93 16 4 C -0.12 -1.10 4.37 -26.73 -0.12 -1.21 16 5 C 0.14 1.77 4.97 -4.04 -0.02 1.75 16 6 N -0.75 -11.60 5.52 -65.22 -0.36 -11.96 16 7 C 0.72 14.94 8.49 -86.92 -0.74 14.20 16 8 O -0.60 -14.88 16.60 5.28 0.09 -14.79 16 9 N -0.63 -13.29 3.33 -176.22 -0.59 -13.88 16 10 C 0.11 1.85 6.15 -3.06 -0.02 1.84 16 11 C -0.12 -2.29 6.13 -24.89 -0.15 -2.44 16 12 C 0.25 6.02 0.87 -89.61 -0.08 5.94 16 13 O -0.58 -14.93 13.16 -35.23 -0.46 -15.39 16 14 C -0.54 -14.00 8.27 -34.44 -0.28 -14.29 16 15 H 0.07 1.71 7.79 -52.48 -0.41 1.30 16 16 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 17 N -0.89 -24.02 10.69 55.43 0.59 -23.43 16 18 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 C 0.11 2.79 5.38 -2.52 -0.01 2.78 16 23 C -0.14 -1.06 5.15 -90.62 -0.47 -1.52 16 24 C -0.19 -1.31 9.57 -26.73 -0.26 -1.57 16 25 C -0.18 -1.24 9.38 -26.73 -0.25 -1.49 16 26 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 27 H 0.05 0.43 7.07 -51.93 -0.37 0.06 16 28 H 0.06 0.51 6.98 -51.93 -0.36 0.14 16 29 H 0.05 0.43 7.29 -51.93 -0.38 0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.91 6.43 -51.93 -0.33 0.58 16 35 H 0.06 0.89 6.43 -51.93 -0.33 0.55 16 36 H 0.39 5.04 7.46 -40.82 -0.30 4.74 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 41 H 0.38 10.05 7.57 45.56 0.34 10.40 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.08 2.36 7.33 -51.93 -0.38 1.98 16 44 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 45 H 0.10 0.75 8.11 -51.93 -0.42 0.33 16 46 H 0.10 0.72 5.85 -51.93 -0.30 0.42 16 47 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 0.64 7.07 -51.93 -0.37 0.27 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -30.29 377.23 -9.75 -40.04 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -7.64 Total: 14.85 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -2.05 Total: 3.44 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.35 Total: -49.26 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.38 Total: -30.18 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.29 -9.75 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592028626.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.966 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds