Wall clock time and date at job start Fri Apr 10 2020 22:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.53006 * 109.46997 * 60.00177 * 4 2 1 6 6 N 1.46500 * 109.47373 * 180.02562 * 5 4 2 7 7 C 1.34769 * 120.00237 * 179.97438 * 6 5 4 8 8 O 1.21595 * 119.99869 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00578 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.64008 * 359.69959 * 9 7 6 11 11 C 1.54337 * 107.26165 * 178.84927 * 10 9 7 12 12 C 1.55156 * 103.02013 * 338.13442 * 11 10 9 13 13 O 1.42894 * 111.00544 * 277.23504 * 12 11 10 14 14 C 1.50702 * 111.03793 * 153.39350 * 12 11 10 15 15 H 1.08005 * 119.99978 * 6.33787 * 14 12 11 16 16 C 1.37879 * 120.00229 * 186.33295 * 14 12 11 17 17 N 1.31508 * 119.99626 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00092 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47173 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47360 * 119.99560 * 18 16 14 21 21 H 1.48499 * 109.46965 * 240.00051 * 18 16 14 22 22 C 1.47424 * 125.65332 * 180.02562 * 9 7 6 23 23 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 24 24 C 1.53001 * 117.49866 * 8.61877 * 23 2 1 25 25 C 1.53000 * 117.49497 * 299.99468 * 23 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 34 34 H 1.09000 * 109.46866 * 300.00212 * 5 4 2 35 35 H 1.08996 * 109.47261 * 59.99820 * 5 4 2 36 36 H 0.97003 * 119.99531 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.87935 * 298.38692 * 10 9 7 38 38 H 1.08998 * 109.88572 * 59.55697 * 10 9 7 39 39 H 1.08999 * 110.85082 * 219.66931 * 11 10 9 40 40 H 1.09003 * 110.51755 * 96.44744 * 11 10 9 41 41 H 0.96708 * 114.00214 * 173.64535 * 13 12 11 42 42 H 0.97009 * 119.99861 * 180.02562 * 17 16 14 43 43 H 1.09005 * 110.36387 * 322.93496 * 22 9 7 44 44 H 1.08997 * 110.36326 * 85.14532 * 22 9 7 45 45 H 1.09004 * 115.54851 * 154.33029 * 23 2 1 46 46 H 1.09004 * 117.49834 * 0.02562 * 24 23 2 47 47 H 1.08995 * 117.49577 * 145.02406 * 24 23 2 48 48 H 1.08998 * 117.49694 * 214.97781 * 25 23 2 49 49 H 1.08998 * 117.50118 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 0.0000 -2.4985 6 7 2.0179 -0.6909 -3.6947 7 6 1.6918 -0.2308 -4.9187 8 8 0.9931 0.7581 -5.0303 9 7 2.1410 -0.8661 -6.0193 10 6 2.9954 -2.0625 -6.0290 11 6 3.2278 -2.4473 -7.5055 12 6 2.0343 -1.7748 -8.2340 13 8 0.8623 -2.5884 -8.1559 14 6 2.3800 -1.4666 -9.6681 15 1 3.3170 -1.8077 -10.0830 16 6 1.5001 -0.7494 -10.4506 17 7 0.3593 -0.3337 -9.9452 18 14 1.9283 -0.3681 -12.2284 19 1 3.2591 -0.9425 -12.5512 20 1 0.9023 -0.9616 -13.1230 21 1 1.9642 1.1035 -12.4242 22 6 1.8626 -0.4725 -7.4125 23 6 2.0400 -0.7214 1.2492 24 6 1.0104 -1.4542 2.1117 25 6 1.6358 -0.1496 2.6096 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7489 -1.2493 34 1 0.4400 0.0000 -2.4985 35 1 1.8933 1.0277 -2.4985 36 1 2.5750 -1.4800 -3.6056 37 1 3.9479 -1.8418 -5.5472 38 1 2.4952 -2.8796 -5.5092 39 1 3.1977 -3.5293 -7.6338 40 1 4.1749 -2.0419 -7.8615 41 1 0.0671 -2.1681 -8.5113 42 1 -0.2600 0.1706 -10.4959 43 1 0.8432 -0.0977 -7.5042 44 1 2.5751 0.2833 -7.7426 45 1 3.0324 -1.1642 1.1642 46 1 -0.0303 -1.4228 1.7889 47 1 1.3253 -2.3795 2.5941 48 1 2.3620 -0.2166 3.4196 49 1 1.0069 0.7407 2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592028626.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:22 Heat of formation + Delta-G solvation = -86.061191 kcal Electronic energy + Delta-G solvation = -26455.358030 eV Core-core repulsion = 22802.883689 eV Total energy + Delta-G solvation = -3652.474341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.27619 -40.17918 -39.06588 -36.48817 -36.02409 -34.31898 -34.22397 -31.80203 -29.80946 -29.21037 -28.31947 -26.98277 -25.67953 -24.12448 -23.01528 -22.44143 -21.45243 -21.03859 -19.35494 -19.05373 -18.66352 -17.59201 -17.07606 -16.99032 -16.51875 -16.22734 -15.97036 -15.73683 -15.21884 -15.00458 -14.73835 -14.66253 -14.41707 -14.04353 -13.76715 -13.52048 -13.41981 -13.28336 -12.95926 -12.85906 -12.81898 -12.52197 -12.41849 -12.32799 -12.19451 -12.07692 -12.03358 -11.89976 -11.79460 -11.37147 -11.34352 -11.18167 -10.96115 -10.70239 -10.66348 -10.31013 -10.13822 -9.30100 -8.23565 -6.40837 1.41203 1.44496 1.55457 1.71479 2.17094 2.38992 2.96524 3.02548 3.12982 3.61822 3.80952 3.86324 3.98633 4.08908 4.16398 4.18177 4.20793 4.28586 4.35759 4.37036 4.46697 4.60408 4.63727 4.69287 4.78042 4.80392 4.87303 4.98000 5.01910 5.04745 5.08366 5.10975 5.11926 5.17347 5.18621 5.32178 5.34580 5.39238 5.40929 5.46762 5.48072 5.52323 5.58518 5.77138 6.06715 6.21544 6.67046 7.09205 7.28420 7.35850 7.59742 8.81745 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034291 B = 0.002492 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.353582 B =11232.845833 C =11499.374173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 C -0.144 4.144 4 C -0.106 4.106 5 C 0.136 3.864 6 N -0.730 5.730 7 C 0.707 3.293 8 O -0.647 6.647 9 N -0.635 5.635 10 C 0.107 3.893 11 C -0.111 4.111 12 C 0.231 3.769 13 O -0.587 6.587 14 C -0.554 4.554 15 H 0.070 0.930 16 C 0.024 3.976 17 N -0.916 5.916 18 Si 0.965 3.035 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.284 1.284 22 C 0.128 3.872 23 C -0.143 4.143 24 C -0.187 4.187 25 C -0.178 4.178 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.409 0.591 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.372 0.628 42 H 0.268 0.732 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.109 0.891 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.905 -2.964 22.658 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 C -0.201 4.201 4 C -0.144 4.144 5 C 0.013 3.987 6 N -0.387 5.387 7 C 0.409 3.591 8 O -0.530 6.530 9 N -0.371 5.371 10 C -0.015 4.015 11 C -0.148 4.148 12 C 0.191 3.809 13 O -0.394 6.394 14 C -0.592 4.592 15 H 0.088 0.912 16 C -0.177 4.177 17 N -0.555 5.555 18 Si 0.790 3.210 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.210 1.210 22 C 0.004 3.996 23 C -0.161 4.161 24 C -0.224 4.224 25 C -0.215 4.215 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.221 0.779 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.127 0.873 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.654 -2.547 22.906 23.731 hybrid contribution -0.506 0.707 -1.495 1.730 sum 5.148 -1.841 21.411 22.098 Atomic orbital electron populations 1.22102 0.94856 1.02144 1.01689 1.19906 0.95131 0.94937 0.92506 1.21930 1.01465 0.95080 1.01653 1.21747 1.01825 0.99635 0.91151 1.21411 0.98503 0.96077 0.82752 1.44979 1.56870 1.33636 1.03176 1.15798 0.80100 0.82285 0.80905 1.90842 1.45517 1.30170 1.86503 1.47879 1.53347 1.30658 1.05225 1.22124 0.94310 0.86602 0.98455 1.22597 0.97802 1.01584 0.92838 1.19882 0.83499 0.85413 0.92102 1.86089 1.20706 1.46895 1.85750 1.21830 1.05112 1.35512 0.96740 0.91198 1.25859 0.94697 0.94251 1.02905 1.69863 1.09883 1.37718 1.38058 0.85401 0.78636 0.77557 0.79393 1.18622 1.20622 1.20966 1.22654 0.99061 0.99498 0.78382 1.22278 0.99642 1.03531 0.90693 1.23199 0.99052 0.96277 1.03825 1.22982 1.03951 0.97505 0.97035 0.93461 0.91856 0.91842 0.91919 0.92017 0.93451 0.89825 0.90292 0.93180 0.92675 0.75507 0.89119 0.90851 0.89549 0.89272 0.77942 0.92251 0.93952 0.94381 0.87256 0.88298 0.88496 0.88284 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 6.72 71.98 0.48 -1.96 16 2 C -0.02 -0.36 0.65 -52.18 -0.03 -0.39 16 3 C -0.14 -2.26 7.96 71.98 0.57 -1.69 16 4 C -0.11 -1.73 4.37 30.60 0.13 -1.60 16 5 C 0.14 3.43 4.97 86.38 0.43 3.86 16 6 N -0.73 -21.41 5.52 -478.53 -2.64 -24.05 16 7 C 0.71 29.56 8.49 179.06 1.52 31.08 16 8 O -0.65 -33.35 16.60 -4.01 -0.07 -33.41 16 9 N -0.63 -26.53 3.33 -829.69 -2.76 -29.29 16 10 C 0.11 3.45 6.15 86.73 0.53 3.98 16 11 C -0.11 -4.13 6.13 31.79 0.19 -3.93 16 12 C 0.23 11.27 0.87 -10.14 -0.01 11.26 16 13 O -0.59 -30.41 13.16 -148.98 -1.96 -32.37 16 14 C -0.55 -28.94 8.27 25.60 0.21 -28.73 16 15 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 16 C 0.02 1.25 5.29 84.66 0.45 1.70 16 17 N -0.92 -50.90 10.69 21.45 0.23 -50.67 16 18 Si 0.96 42.18 29.54 68.60 2.03 44.20 16 19 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 C 0.13 6.45 5.38 86.86 0.47 6.92 16 23 C -0.14 -1.79 5.15 -10.79 -0.06 -1.85 16 24 C -0.19 -2.22 9.57 30.60 0.29 -1.93 16 25 C -0.18 -2.04 9.38 30.60 0.29 -1.76 16 26 H 0.05 0.92 6.43 -2.39 -0.02 0.91 16 27 H 0.06 0.91 7.07 -2.39 -0.02 0.89 16 28 H 0.06 0.98 6.98 -2.38 -0.02 0.97 16 29 H 0.06 0.88 7.29 -2.39 -0.02 0.87 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.89 6.43 -2.39 -0.02 0.88 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.43 6.43 -2.39 -0.02 1.42 16 35 H 0.05 1.52 6.43 -2.39 -0.02 1.50 16 36 H 0.41 9.24 7.46 -92.71 -0.69 8.55 16 37 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16 41 H 0.37 20.36 7.57 -74.05 -0.56 19.80 16 42 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 43 H 0.04 2.47 7.33 -2.38 -0.02 2.46 16 44 H 0.04 2.01 8.03 -2.39 -0.02 1.99 16 45 H 0.11 1.25 8.11 -2.39 -0.02 1.24 16 46 H 0.10 1.22 5.85 -2.39 -0.01 1.21 16 47 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.09 1.09 7.07 -2.39 -0.02 1.07 16 Total: -1.00 -67.68 377.23 0.01 -67.67 By element: Atomic # 1 Polarization: 43.26 SS G_CDS: -0.30 Total: 42.96 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 5.48 Total: 14.97 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.17 Total: -104.02 kcal Atomic # 8 Polarization: -63.76 SS G_CDS: -2.03 Total: -65.79 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -67.68 0.01 -67.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592028626.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.391 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds