Wall clock time and date at job start Fri Apr 10 2020 22:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 C 1.52994 * 109.47668 * 239.99337 * 2 1 3 5 5 C 1.53002 * 109.46662 * 119.99160 * 2 1 3 6 6 C 1.53005 * 109.46957 * 60.00274 * 5 2 1 7 7 H 1.09002 * 115.55955 * 29.31235 * 6 5 2 8 8 C 1.52999 * 117.50056 * 243.61969 * 6 5 2 9 9 C 1.53000 * 60.00131 * 252.51106 * 8 6 5 10 10 H 1.08998 * 117.50250 * 107.49088 * 9 8 6 11 11 N 1.46502 * 117.49857 * 252.48905 * 9 8 6 12 12 C 1.34779 * 120.00174 * 223.74473 * 11 9 8 13 13 O 1.21588 * 119.99436 * 359.97438 * 12 11 9 14 14 N 1.34768 * 120.00154 * 179.97438 * 12 11 9 15 15 C 1.47025 * 125.64933 * 359.69329 * 14 12 11 16 16 C 1.54335 * 107.26203 * 178.84958 * 15 14 12 17 17 C 1.55151 * 103.02282 * 338.13836 * 16 15 14 18 18 O 1.42898 * 111.00705 * 277.23102 * 17 16 15 19 19 C 1.50705 * 111.00341 * 153.38240 * 17 16 15 20 20 H 1.08004 * 119.99782 * 4.45735 * 19 17 16 21 21 C 1.37875 * 120.00297 * 184.45334 * 19 17 16 22 22 N 1.31518 * 119.99474 * 5.27019 * 21 19 17 23 23 Si 1.86795 * 120.00369 * 185.26415 * 21 19 17 24 24 H 1.48504 * 109.46891 * 84.99901 * 23 21 19 25 25 H 1.48493 * 109.47449 * 204.99943 * 23 21 19 26 26 H 1.48500 * 109.47062 * 325.00304 * 23 21 19 27 27 C 1.47429 * 125.64788 * 180.02562 * 14 12 11 28 28 H 1.08994 * 109.47324 * 300.00834 * 1 2 3 29 29 H 1.09007 * 109.46570 * 60.00923 * 1 2 3 30 30 H 1.09004 * 109.47164 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46873 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47025 * 299.99127 * 3 2 1 33 33 H 1.08997 * 109.47380 * 59.99722 * 3 2 1 34 34 H 1.09004 * 109.47386 * 300.00548 * 4 2 1 35 35 H 1.09010 * 109.46874 * 59.99988 * 4 2 1 36 36 H 1.08996 * 109.47609 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47683 * 300.00317 * 5 2 1 38 38 H 1.08995 * 109.47209 * 179.97438 * 5 2 1 39 39 H 1.09005 * 117.49738 * 145.01888 * 8 6 5 40 40 H 1.08995 * 117.51890 * 359.97438 * 8 6 5 41 41 H 0.96996 * 120.00216 * 43.74502 * 11 9 8 42 42 H 1.08992 * 109.88083 * 298.39354 * 15 14 12 43 43 H 1.08994 * 109.88142 * 59.55999 * 15 14 12 44 44 H 1.09005 * 110.84544 * 219.67164 * 16 15 14 45 45 H 1.09002 * 110.51881 * 96.45599 * 16 15 14 46 46 H 0.96701 * 114.00055 * 166.76011 * 18 17 16 47 47 H 0.97005 * 119.99259 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.36500 * 322.92696 * 27 14 12 49 49 H 1.08993 * 110.36965 * 85.25374 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0399 -0.7211 1.2494 6 6 1.5299 -2.1636 1.2495 7 1 1.3621 -2.6032 0.2663 8 6 0.5858 -2.5791 2.3796 9 6 2.0282 -3.0891 2.3613 10 1 2.7194 -2.6703 3.0927 11 7 2.2433 -4.4983 2.0234 12 6 3.1144 -5.2374 2.7385 13 8 3.7222 -4.7345 3.6637 14 7 3.3118 -6.5339 2.4279 15 6 2.6420 -7.2669 1.3437 16 6 3.2021 -8.7050 1.3489 17 6 4.5625 -8.5477 2.0781 18 8 5.5785 -8.1036 1.1767 19 6 4.9661 -9.8339 2.7520 20 1 4.3654 -10.7223 2.6237 21 6 6.1020 -9.8765 3.5322 22 7 6.7759 -8.7731 3.7732 23 14 6.6837 -11.5012 4.2472 24 1 7.5174 -12.2127 3.2452 25 1 7.4887 -11.2448 5.4684 26 1 5.5075 -12.3379 4.5962 27 6 4.2301 -7.4539 3.1236 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5137 -0.8902 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6768 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2488 37 1 1.6766 -0.2072 2.1393 38 1 3.1299 -0.7215 1.2493 39 1 -0.2031 -3.2920 2.1397 40 1 0.3282 -1.8252 3.1234 41 1 1.7587 -4.8994 1.2851 42 1 1.5663 -7.2854 1.5181 43 1 2.8564 -6.7910 0.3868 44 1 3.3495 -9.0676 0.3315 45 1 2.5413 -9.3704 1.9046 46 1 6.3856 -7.7983 1.6133 47 1 7.5749 -8.8031 4.3224 48 1 5.1368 -6.9290 3.4247 49 1 3.7400 -7.8948 3.9915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593445171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:24 Heat of formation + Delta-G solvation = -90.789430 kcal Electronic energy + Delta-G solvation = -26432.347516 eV Core-core repulsion = 22779.668143 eV Total energy + Delta-G solvation = -3652.679373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.32577 -39.86264 -38.91157 -37.10803 -36.02977 -34.23742 -33.80419 -31.56333 -29.52708 -28.32754 -28.08039 -28.01354 -26.93270 -24.46095 -22.79613 -21.94540 -21.45414 -21.09273 -19.49481 -19.20004 -18.76213 -17.60842 -16.98711 -16.82130 -16.30874 -16.10511 -15.49522 -15.39900 -15.15389 -15.12232 -14.78368 -14.59532 -14.16181 -14.06597 -13.72178 -13.51241 -13.32633 -13.19045 -13.07959 -12.81975 -12.59583 -12.56932 -12.52173 -12.43424 -12.31862 -12.24467 -12.21468 -12.07792 -11.59328 -11.45807 -11.38319 -11.27295 -11.19432 -10.88325 -10.65852 -10.29144 -9.82445 -9.24849 -8.22955 -6.39533 1.42738 1.44192 1.53565 1.62719 2.07697 2.39224 2.96956 3.02221 3.02738 3.68740 3.80103 3.81771 3.96267 4.05972 4.08487 4.14899 4.19085 4.25759 4.34063 4.46835 4.60300 4.72422 4.73290 4.76666 4.82405 4.86410 4.95326 4.99557 5.01756 5.02433 5.06827 5.10862 5.14872 5.18436 5.29393 5.29813 5.36222 5.37251 5.46266 5.47053 5.57064 5.58762 5.63624 5.76673 6.07930 6.18899 6.67110 7.05420 7.26790 7.35231 7.57111 8.82141 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.002581 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.729797 B =10844.002221 C =10903.620701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.078 4.078 6 C -0.135 4.135 7 H 0.119 0.881 8 C -0.170 4.170 9 C 0.070 3.930 10 H 0.106 0.894 11 N -0.700 5.700 12 C 0.712 3.288 13 O -0.645 6.645 14 N -0.634 5.634 15 C 0.107 3.893 16 C -0.111 4.111 17 C 0.232 3.768 18 O -0.584 6.584 19 C -0.555 4.555 20 H 0.069 0.931 21 C 0.025 3.975 22 N -0.914 5.914 23 Si 0.964 3.036 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.265 1.265 27 C 0.128 3.872 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.409 0.591 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.268 0.732 48 H 0.044 0.956 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 15.153 -9.272 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.116 4.116 6 C -0.154 4.154 7 H 0.136 0.864 8 C -0.208 4.208 9 C -0.036 4.036 10 H 0.124 0.876 11 N -0.354 5.354 12 C 0.414 3.586 13 O -0.528 6.528 14 N -0.370 5.370 15 C -0.015 4.015 16 C -0.148 4.148 17 C 0.192 3.808 18 O -0.391 6.391 19 C -0.593 4.593 20 H 0.087 0.913 21 C -0.176 4.176 22 N -0.553 5.553 23 Si 0.789 3.211 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.189 1.189 27 C 0.004 3.996 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.245 0.755 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.218 0.782 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.869 15.480 -8.950 23.255 hybrid contribution 1.187 -0.881 0.932 1.747 sum -13.683 14.598 -8.018 21.555 Atomic orbital electron populations 1.21844 0.93685 1.02144 1.01729 1.20495 0.96340 0.95215 0.94374 1.21870 1.00743 0.95173 1.02127 1.21953 1.00584 1.00500 0.97164 1.21264 0.99838 0.92023 0.98485 1.22967 1.02048 0.95569 0.94839 0.86356 1.23698 0.92557 1.03347 1.01219 1.21564 0.99038 0.80134 1.02864 0.87592 1.44267 1.44941 1.10286 1.35882 1.15693 0.80505 0.80303 0.82094 1.90837 1.54885 1.72216 1.34825 1.47889 1.45498 1.08070 1.35560 1.22127 0.97047 0.92623 0.89729 1.22601 0.95030 0.95299 1.01898 1.19871 0.85725 0.89633 0.85572 1.86117 1.28553 1.86266 1.38200 1.21776 1.10371 0.96814 1.30330 0.91263 1.25840 0.96471 0.99825 0.95451 1.69903 1.18321 1.28258 1.38837 0.85480 0.78449 0.79665 0.77484 1.20001 1.21309 1.18920 1.22708 0.90926 0.90039 0.95877 0.92553 0.92525 0.92252 0.93212 0.92025 0.92374 0.92356 0.92098 0.93548 0.91061 0.92667 0.87492 0.87180 0.75474 0.89187 0.90852 0.89537 0.89315 0.78229 0.92318 0.93724 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.23 71.98 0.59 -0.99 16 2 C -0.06 -0.87 0.80 -52.18 -0.04 -0.91 16 3 C -0.14 -1.79 8.47 71.98 0.61 -1.18 16 4 C -0.14 -2.05 8.23 71.98 0.59 -1.46 16 5 C -0.08 -1.29 4.55 30.60 0.14 -1.15 16 6 C -0.13 -2.38 4.18 -10.79 -0.05 -2.42 16 7 H 0.12 1.89 6.06 -2.39 -0.01 1.88 16 8 C -0.17 -2.97 10.10 30.59 0.31 -2.66 16 9 C 0.07 1.81 6.15 44.99 0.28 2.09 16 10 H 0.11 3.37 7.40 -2.39 -0.02 3.35 16 11 N -0.70 -20.72 5.53 -457.81 -2.53 -23.25 16 12 C 0.71 29.65 8.49 179.06 1.52 31.17 16 13 O -0.65 -33.07 16.17 -3.99 -0.06 -33.14 16 14 N -0.63 -26.31 3.33 -829.72 -2.76 -29.07 16 15 C 0.11 3.42 6.15 86.73 0.53 3.95 16 16 C -0.11 -4.12 6.12 31.78 0.19 -3.92 16 17 C 0.23 11.27 0.86 -10.14 -0.01 11.26 16 18 O -0.58 -30.06 13.14 -148.98 -1.96 -32.02 16 19 C -0.55 -29.03 8.26 25.60 0.21 -28.82 16 20 H 0.07 3.49 7.79 -2.91 -0.02 3.46 16 21 C 0.03 1.34 5.32 84.65 0.45 1.79 16 22 N -0.91 -50.86 10.80 21.45 0.23 -50.63 16 23 Si 0.96 42.27 29.54 68.60 2.03 44.29 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 C 0.13 6.43 5.36 86.86 0.47 6.89 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.69 7.20 -2.38 -0.02 0.67 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.82 6.14 -2.38 -0.01 0.80 16 35 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 1.10 7.88 -2.39 -0.02 1.08 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.11 1.71 8.03 -2.39 -0.02 1.69 16 41 H 0.41 9.44 7.81 -92.71 -0.72 8.72 16 42 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.09 3.00 8.14 -2.38 -0.02 2.98 16 45 H 0.09 3.08 8.03 -2.39 -0.02 3.06 16 46 H 0.37 20.02 7.71 -74.06 -0.57 19.45 16 47 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 48 H 0.04 2.59 7.27 -2.39 -0.02 2.57 16 49 H 0.04 2.03 8.03 -2.39 -0.02 2.01 16 Total: -1.00 -67.12 386.46 0.39 -66.73 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -0.36 Total: 43.46 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 5.80 Total: 13.63 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -5.06 Total: -102.95 kcal Atomic # 8 Polarization: -63.14 SS G_CDS: -2.02 Total: -65.16 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -67.12 0.39 -66.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593445171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.061 kcal (2) G-P(sol) polarization free energy of solvation -67.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds