Wall clock time and date at job start Fri Apr 10 2020 22:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47541 * 2 1 4 4 C 1.53001 * 109.46984 * 239.99749 * 2 1 3 5 5 C 1.52999 * 109.46984 * 120.00115 * 2 1 3 6 6 H 1.08997 * 109.13128 * 179.47998 * 5 2 1 7 7 N 1.45758 * 109.30449 * 59.99436 * 5 2 1 8 8 C 1.33350 * 124.10891 * 220.63496 * 7 5 2 9 9 O 1.21283 * 118.24281 * 182.19961 * 8 7 5 10 10 C 1.50174 * 123.50638 * 2.48437 * 8 7 5 11 11 C 1.53256 * 109.79597 * 341.94903 * 10 8 7 12 12 C 1.52921 * 109.29872 * 298.96141 * 5 2 1 13 13 H 1.08995 * 109.60430 * 51.31038 * 12 5 2 14 14 N 1.46507 * 109.60200 * 290.82001 * 12 5 2 15 15 C 1.34775 * 119.99719 * 154.99914 * 14 12 5 16 16 O 1.21284 * 120.00218 * 0.02562 * 15 14 12 17 17 C 1.50697 * 119.99815 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.47237 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47284 * 180.02562 * 18 17 15 20 20 C 1.50696 * 109.47066 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00355 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99913 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99893 * 359.97438 * 22 20 19 24 24 Si 1.86811 * 119.99861 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46876 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46670 * 120.00044 * 24 22 20 27 27 H 1.48492 * 109.46882 * 239.99938 * 24 22 20 28 28 H 1.08999 * 109.47006 * 300.00401 * 1 2 3 29 29 H 1.08997 * 109.47040 * 60.00178 * 1 2 3 30 30 H 1.09000 * 109.47515 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47334 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47225 * 299.99639 * 3 2 1 33 33 H 1.08999 * 109.47298 * 59.99777 * 3 2 1 34 34 H 1.09000 * 109.47365 * 299.99917 * 4 2 1 35 35 H 1.08997 * 109.47173 * 60.00154 * 4 2 1 36 36 H 1.08999 * 109.47201 * 180.02562 * 4 2 1 37 37 H 0.97001 * 117.94058 * 40.61725 * 7 5 2 38 38 H 1.08999 * 109.40143 * 102.26418 * 10 8 7 39 39 H 1.09003 * 109.39964 * 222.00366 * 10 8 7 40 40 H 1.09002 * 109.90169 * 289.51219 * 11 10 8 41 41 H 1.09002 * 109.62911 * 168.89965 * 11 10 8 42 42 H 0.96998 * 119.99686 * 335.00370 * 14 12 5 43 43 H 1.09003 * 109.47249 * 299.99856 * 17 15 14 44 44 H 1.08996 * 109.47366 * 60.00161 * 17 15 14 45 45 H 1.09001 * 109.47026 * 300.00258 * 18 17 15 46 46 H 1.09005 * 109.47248 * 59.99730 * 18 17 15 47 47 H 1.09001 * 109.46679 * 299.99593 * 19 18 17 48 48 H 1.08996 * 109.47374 * 59.99812 * 19 18 17 49 49 H 0.97002 * 119.99770 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 1 3.1298 -0.7262 1.2390 7 7 1.5519 -2.0947 1.2456 8 6 1.1087 -2.7337 2.3289 9 8 0.7646 -3.8908 2.2120 10 6 1.0071 -2.0953 3.6844 11 6 1.8739 -0.8323 3.7295 12 6 1.5495 0.0176 2.4950 13 1 0.4723 0.1705 2.4292 14 7 2.2277 1.3122 2.5975 15 6 1.6458 2.3265 3.2676 16 8 0.5610 2.1675 3.7861 17 6 2.3431 3.6583 3.3726 18 6 1.4750 4.6264 4.1788 19 6 2.1826 5.9788 4.2848 20 6 1.3272 6.9325 5.0783 21 1 0.3739 6.6068 5.4677 22 6 1.7616 8.2209 5.3072 23 7 2.9226 8.6173 4.8335 24 14 0.7008 9.4034 6.2903 25 1 -0.5482 8.7174 6.7082 26 1 1.4453 9.8521 7.4943 27 1 0.3626 10.5802 5.4503 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4423 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7217 -1.2490 37 1 1.5492 -2.5739 0.4022 38 1 -0.0318 -1.8331 3.8841 39 1 1.3541 -2.7977 4.4423 40 1 2.9290 -1.1058 3.7198 41 1 1.6499 -0.2665 4.6339 42 1 3.0954 1.4392 2.1831 43 1 3.3024 3.5277 3.8736 44 1 2.5070 4.0624 2.3736 45 1 0.5155 4.7571 3.6782 46 1 1.3114 4.2222 5.1778 47 1 3.1422 5.8484 4.7852 48 1 2.3458 6.3829 3.2857 49 1 3.2280 9.5239 4.9943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594025795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:29 Heat of formation + Delta-G solvation = -97.857978 kcal Electronic energy + Delta-G solvation = -26894.337362 eV Core-core repulsion = 23241.351474 eV Total energy + Delta-G solvation = -3652.985888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45684 -39.55205 -38.23880 -35.53374 -34.33333 -34.18673 -32.49297 -31.96002 -29.12658 -27.75076 -27.55465 -27.48202 -24.87824 -23.97612 -22.65767 -20.75387 -20.06504 -19.86138 -19.35320 -17.46167 -17.01807 -16.44520 -16.39753 -16.01926 -15.68747 -15.16037 -14.93262 -14.55671 -14.45427 -14.24704 -14.16259 -13.70847 -13.54468 -13.42112 -12.71204 -12.47800 -12.41988 -12.30477 -12.25655 -12.10210 -11.90667 -11.80800 -11.56540 -11.36336 -11.25848 -11.17264 -10.86011 -10.83659 -10.64269 -10.53833 -10.03024 -9.78592 -9.71645 -9.43405 -9.31685 -9.04441 -8.96763 -8.34835 -6.00346 -4.01659 2.34387 2.70389 2.79232 3.23480 3.31931 3.39522 3.45056 3.99440 4.04241 4.27675 4.43097 4.47260 4.62836 4.67223 4.68215 4.83664 4.94727 5.03820 5.11031 5.23738 5.30903 5.36086 5.39039 5.45279 5.48497 5.55508 5.62031 5.62531 5.64733 5.65615 5.69706 5.78358 5.85288 6.01016 6.05618 6.19628 6.28569 6.41987 6.67802 6.88298 6.97692 7.12128 7.42545 7.68109 7.80216 7.88534 8.00313 8.31775 8.44224 9.05769 9.62645 11.11153 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.002682 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.627882 B =10437.667877 C =11096.809823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.164 4.164 4 C -0.145 4.145 5 C 0.144 3.856 6 H 0.081 0.919 7 N -0.709 5.709 8 C 0.521 3.479 9 O -0.559 6.559 10 C -0.133 4.133 11 C -0.137 4.137 12 C 0.133 3.867 13 H 0.104 0.896 14 N -0.728 5.728 15 C 0.514 3.486 16 O -0.531 6.531 17 C -0.139 4.139 18 C -0.095 4.095 19 C 0.020 3.980 20 C -0.517 4.517 21 H 0.056 0.944 22 C 0.056 3.944 23 N -0.897 5.897 24 Si 0.891 3.109 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.400 0.600 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.402 0.598 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.015 0.985 48 H 0.015 0.985 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 -20.756 -11.423 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 C -0.221 4.221 4 C -0.203 4.203 5 C 0.038 3.962 6 H 0.098 0.902 7 N -0.363 5.363 8 C 0.308 3.692 9 O -0.438 6.438 10 C -0.173 4.173 11 C -0.175 4.175 12 C 0.027 3.973 13 H 0.122 0.878 14 N -0.383 5.383 15 C 0.303 3.697 16 O -0.406 6.406 17 C -0.179 4.179 18 C -0.133 4.133 19 C -0.017 4.017 20 C -0.556 4.556 21 H 0.075 0.925 22 C -0.145 4.145 23 N -0.537 5.537 24 Si 0.719 3.281 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.238 0.762 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.238 0.762 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.145 -21.194 -10.875 23.849 hybrid contribution 0.065 0.668 -0.111 0.680 sum 1.209 -20.526 -10.986 23.312 Atomic orbital electron populations 1.21945 0.93795 1.02023 1.02613 1.20867 0.96729 0.96329 0.93812 1.22381 1.00948 0.94528 1.04284 1.21926 1.01195 0.99895 0.97238 1.21191 0.98565 0.81276 0.95162 0.90158 1.45543 1.65325 1.13871 1.11517 1.20287 0.75829 0.86292 0.86765 1.90766 1.49393 1.17543 1.86067 1.21650 1.03354 0.98040 0.94303 1.22156 1.00159 0.95441 0.99788 1.21166 0.99761 0.83426 0.92924 0.87797 1.46327 1.23488 1.11299 1.57195 1.21289 0.85938 0.85911 0.76604 1.90696 1.21177 1.83303 1.45445 1.21875 1.00939 0.91573 1.03495 1.21448 0.97901 0.95604 0.98333 1.19130 0.95643 0.89854 0.97049 1.21305 1.04612 0.96325 1.33337 0.92537 1.25019 0.95127 0.98339 0.96021 1.69967 1.19632 1.18046 1.46080 0.86550 0.80684 0.81006 0.79888 1.19668 1.21042 1.21039 0.91873 0.92164 0.92556 0.92430 0.92201 0.89688 0.92847 0.91811 0.92202 0.76208 0.87737 0.87781 0.90888 0.89455 0.76178 0.89239 0.89242 0.92689 0.92693 0.96623 0.96616 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.00 37.16 0.30 -0.85 16 2 C -0.08 -0.49 0.62 -154.51 -0.10 -0.59 16 3 C -0.16 -1.12 7.12 37.15 0.26 -0.85 16 4 C -0.15 -0.77 8.26 37.16 0.31 -0.46 16 5 C 0.14 0.95 2.02 -68.37 -0.14 0.81 16 6 H 0.08 0.44 8.13 -51.93 -0.42 0.01 16 7 N -0.71 -5.47 4.34 -54.85 -0.24 -5.71 16 8 C 0.52 5.33 7.71 -11.87 -0.09 5.24 16 9 O -0.56 -7.94 17.78 5.55 0.10 -7.84 16 10 C -0.13 -1.14 6.03 -28.01 -0.17 -1.31 16 11 C -0.14 -1.14 5.64 -26.42 -0.15 -1.29 16 12 C 0.13 1.13 1.59 -67.79 -0.11 1.02 16 13 H 0.10 1.11 5.45 -51.93 -0.28 0.83 16 14 N -0.73 -6.48 2.69 -53.67 -0.14 -6.62 16 15 C 0.51 6.90 7.05 -10.99 -0.08 6.82 16 16 O -0.53 -9.26 15.65 5.55 0.09 -9.18 16 17 C -0.14 -2.02 5.70 -27.88 -0.16 -2.18 16 18 C -0.09 -1.92 4.44 -26.73 -0.12 -2.04 16 19 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 20 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 21 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 24 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 28 H 0.06 0.60 6.26 -51.93 -0.33 0.28 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 7.60 -51.93 -0.39 0.05 16 31 H 0.06 0.31 7.88 -51.93 -0.41 -0.10 16 32 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.08 0.72 4.69 -51.93 -0.24 0.48 16 34 H 0.05 0.27 6.48 -51.93 -0.34 -0.07 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.40 2.87 6.76 -40.82 -0.28 2.59 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.40 2.56 7.38 -40.82 -0.30 2.26 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 46 H 0.05 1.17 8.10 -51.93 -0.42 0.74 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -34.03 378.90 -8.00 -42.03 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.45 Total: -0.40 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.79 Total: -8.77 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.35 Total: -38.21 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.19 Total: -17.01 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.03 -8.00 -42.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594025795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.824 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds