Wall clock time and date at job start Fri Apr 10 2020 22:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47541 * 2 1 4 4 C 1.53001 * 109.46984 * 239.99749 * 2 1 3 5 5 C 1.52999 * 109.46984 * 120.00115 * 2 1 3 6 6 H 1.08997 * 109.13128 * 179.47998 * 5 2 1 7 7 N 1.45758 * 109.30449 * 59.99436 * 5 2 1 8 8 C 1.33350 * 124.10891 * 220.63496 * 7 5 2 9 9 O 1.21283 * 118.24281 * 182.19961 * 8 7 5 10 10 C 1.50174 * 123.50638 * 2.48437 * 8 7 5 11 11 C 1.53256 * 109.79597 * 341.94903 * 10 8 7 12 12 C 1.52921 * 109.29872 * 298.96141 * 5 2 1 13 13 H 1.08995 * 109.60430 * 51.31038 * 12 5 2 14 14 N 1.46507 * 109.60200 * 290.82001 * 12 5 2 15 15 C 1.34775 * 119.99719 * 154.99914 * 14 12 5 16 16 O 1.21284 * 120.00218 * 0.02562 * 15 14 12 17 17 C 1.50697 * 119.99815 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.47237 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47284 * 180.02562 * 18 17 15 20 20 C 1.50696 * 109.47066 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00355 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99913 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99893 * 359.97438 * 22 20 19 24 24 Si 1.86811 * 119.99861 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46876 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46670 * 120.00044 * 24 22 20 27 27 H 1.48492 * 109.46882 * 239.99938 * 24 22 20 28 28 H 1.08999 * 109.47006 * 300.00401 * 1 2 3 29 29 H 1.08997 * 109.47040 * 60.00178 * 1 2 3 30 30 H 1.09000 * 109.47515 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47334 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47225 * 299.99639 * 3 2 1 33 33 H 1.08999 * 109.47298 * 59.99777 * 3 2 1 34 34 H 1.09000 * 109.47365 * 299.99917 * 4 2 1 35 35 H 1.08997 * 109.47173 * 60.00154 * 4 2 1 36 36 H 1.08999 * 109.47201 * 180.02562 * 4 2 1 37 37 H 0.97001 * 117.94058 * 40.61725 * 7 5 2 38 38 H 1.08999 * 109.40143 * 102.26418 * 10 8 7 39 39 H 1.09003 * 109.39964 * 222.00366 * 10 8 7 40 40 H 1.09002 * 109.90169 * 289.51219 * 11 10 8 41 41 H 1.09002 * 109.62911 * 168.89965 * 11 10 8 42 42 H 0.96998 * 119.99686 * 335.00370 * 14 12 5 43 43 H 1.09003 * 109.47249 * 299.99856 * 17 15 14 44 44 H 1.08996 * 109.47366 * 60.00161 * 17 15 14 45 45 H 1.09001 * 109.47026 * 300.00258 * 18 17 15 46 46 H 1.09005 * 109.47248 * 59.99730 * 18 17 15 47 47 H 1.09001 * 109.46679 * 299.99593 * 19 18 17 48 48 H 1.08996 * 109.47374 * 59.99812 * 19 18 17 49 49 H 0.97002 * 119.99770 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 1 3.1298 -0.7262 1.2390 7 7 1.5519 -2.0947 1.2456 8 6 1.1087 -2.7337 2.3289 9 8 0.7646 -3.8908 2.2120 10 6 1.0071 -2.0953 3.6844 11 6 1.8739 -0.8323 3.7295 12 6 1.5495 0.0176 2.4950 13 1 0.4723 0.1705 2.4292 14 7 2.2277 1.3122 2.5975 15 6 1.6458 2.3265 3.2676 16 8 0.5610 2.1675 3.7861 17 6 2.3431 3.6583 3.3726 18 6 1.4750 4.6264 4.1788 19 6 2.1826 5.9788 4.2848 20 6 1.3272 6.9325 5.0783 21 1 0.3739 6.6068 5.4677 22 6 1.7616 8.2209 5.3072 23 7 2.9226 8.6173 4.8335 24 14 0.7008 9.4034 6.2903 25 1 -0.5482 8.7174 6.7082 26 1 1.4453 9.8521 7.4943 27 1 0.3626 10.5802 5.4503 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4423 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7217 -1.2490 37 1 1.5492 -2.5739 0.4022 38 1 -0.0318 -1.8331 3.8841 39 1 1.3541 -2.7977 4.4423 40 1 2.9290 -1.1058 3.7198 41 1 1.6499 -0.2665 4.6339 42 1 3.0954 1.4392 2.1831 43 1 3.3024 3.5277 3.8736 44 1 2.5070 4.0624 2.3736 45 1 0.5155 4.7571 3.6782 46 1 1.3114 4.2222 5.1778 47 1 3.1422 5.8484 4.7852 48 1 2.3458 6.3829 3.2857 49 1 3.2280 9.5239 4.9943 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594025795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:28 Heat of formation + Delta-G solvation = -119.974083 kcal Electronic energy + Delta-G solvation = -26895.296388 eV Core-core repulsion = 23241.351474 eV Total energy + Delta-G solvation = -3653.944914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.21578 -40.56515 -39.08046 -36.37065 -35.96668 -35.16777 -33.99882 -33.12053 -30.28668 -28.91178 -28.29758 -28.07953 -25.92417 -25.34701 -23.61718 -22.18888 -21.27690 -20.57000 -20.12217 -18.56313 -18.24053 -17.74553 -17.28091 -17.07479 -16.64373 -16.44988 -16.08591 -15.83092 -15.21275 -15.04317 -14.83979 -14.81226 -14.74134 -14.24890 -14.17298 -13.75369 -13.34114 -13.28379 -13.03267 -13.00938 -12.92921 -12.71618 -12.60834 -12.50621 -12.48694 -12.34490 -12.19694 -11.90289 -11.71241 -11.53172 -11.47544 -11.42209 -11.21833 -10.87509 -10.70604 -10.52442 -10.13837 -9.82119 -8.18797 -6.27883 1.39933 1.40966 1.53911 1.54020 1.70733 1.92488 2.40397 2.44975 3.14587 3.34985 3.42002 3.58492 3.82879 3.90430 3.98447 4.05504 4.08463 4.22345 4.30432 4.34544 4.41141 4.43343 4.67031 4.76211 4.79430 4.80992 4.87198 4.91094 4.96387 5.03398 5.05164 5.06765 5.10056 5.14579 5.17044 5.24315 5.33336 5.38869 5.46174 5.50729 5.58307 5.76121 5.80512 5.90972 6.24021 6.30558 6.57540 6.88416 7.12338 7.32562 7.40885 8.92720 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.002682 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.627882 B =10437.667877 C =11096.809823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C -0.164 4.164 4 C -0.143 4.143 5 C 0.150 3.850 6 H 0.110 0.890 7 N -0.697 5.697 8 C 0.521 3.479 9 O -0.603 6.603 10 C -0.130 4.130 11 C -0.130 4.130 12 C 0.133 3.867 13 H 0.082 0.918 14 N -0.702 5.702 15 C 0.522 3.478 16 O -0.577 6.577 17 C -0.131 4.131 18 C -0.082 4.082 19 C 0.026 3.974 20 C -0.545 4.545 21 H 0.050 0.950 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.958 3.042 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.276 1.276 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.406 0.594 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.420 0.580 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 -21.190 -12.255 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.222 4.222 4 C -0.200 4.200 5 C 0.045 3.955 6 H 0.128 0.872 7 N -0.349 5.349 8 C 0.309 3.691 9 O -0.485 6.485 10 C -0.170 4.170 11 C -0.169 4.169 12 C 0.027 3.973 13 H 0.100 0.900 14 N -0.356 5.356 15 C 0.310 3.690 16 O -0.456 6.456 17 C -0.171 4.171 18 C -0.121 4.121 19 C -0.011 4.011 20 C -0.583 4.583 21 H 0.068 0.932 22 C -0.194 4.194 23 N -0.569 5.569 24 Si 0.783 3.217 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.202 1.202 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.244 0.756 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.259 0.741 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.526 -21.626 -11.755 24.744 hybrid contribution -0.353 0.823 0.101 0.901 sum 2.173 -20.803 -11.653 23.944 Atomic orbital electron populations 1.21931 0.95246 1.01480 1.01645 1.20833 0.95475 0.96510 0.94406 1.22364 1.02395 0.94174 1.03229 1.21909 1.02099 0.99758 0.96241 1.21261 0.99977 0.80221 0.94050 0.87214 1.45469 1.64122 1.14086 1.11189 1.20484 0.75273 0.85730 0.87591 1.90749 1.51574 1.19440 1.86749 1.21627 1.03318 0.98239 0.93834 1.22093 1.01212 0.94823 0.98738 1.21168 0.98701 0.83156 0.94280 0.90011 1.45962 1.23740 1.10459 1.55468 1.20932 0.85180 0.86265 0.76626 1.90693 1.23162 1.83976 1.47783 1.21694 1.00470 0.91109 1.03807 1.21151 0.97775 0.94664 0.98484 1.19019 0.94921 0.91772 0.95413 1.21737 1.04941 0.97592 1.34058 0.93206 1.25864 0.96428 1.00098 0.97008 1.70061 1.21040 1.18736 1.47059 0.85505 0.78983 0.78682 0.78547 1.19286 1.20170 1.20157 0.93946 0.92041 0.92876 0.90105 0.92489 0.91542 0.92567 0.91819 0.90711 0.75565 0.88151 0.86875 0.88862 0.91077 0.74090 0.87204 0.87157 0.94226 0.94204 0.98026 0.97997 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.00 71.98 0.58 -1.62 16 2 C -0.07 -0.75 0.62 -52.19 -0.03 -0.79 16 3 C -0.16 -1.81 7.12 71.98 0.51 -1.30 16 4 C -0.14 -1.08 8.26 71.98 0.59 -0.49 16 5 C 0.15 1.58 2.02 45.10 0.09 1.67 16 6 H 0.11 0.66 8.13 -2.39 -0.02 0.64 16 7 N -0.70 -9.43 4.34 -446.64 -1.94 -11.37 16 8 C 0.52 10.16 7.71 87.71 0.68 10.84 16 9 O -0.60 -16.96 17.78 -3.04 -0.05 -17.02 16 10 C -0.13 -2.13 6.03 29.77 0.18 -1.95 16 11 C -0.13 -1.97 5.64 30.80 0.17 -1.79 16 12 C 0.13 2.06 1.59 45.08 0.07 2.13 16 13 H 0.08 1.74 5.45 -2.39 -0.01 1.73 16 14 N -0.70 -11.00 2.69 -442.10 -1.19 -12.19 16 15 C 0.52 13.51 7.05 87.66 0.62 14.13 16 16 O -0.58 -20.42 15.65 -3.04 -0.05 -20.47 16 17 C -0.13 -3.66 5.70 29.85 0.17 -3.49 16 18 C -0.08 -3.39 4.44 30.59 0.14 -3.26 16 19 C 0.03 1.31 4.97 29.85 0.15 1.46 16 20 C -0.55 -31.35 9.11 25.60 0.23 -31.11 16 21 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 22 C 0.00 0.23 5.46 84.66 0.46 0.69 16 23 N -0.93 -55.29 13.29 21.45 0.28 -55.01 16 24 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 H 0.04 0.82 6.26 -2.39 -0.01 0.81 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.81 7.60 -2.39 -0.02 0.80 16 31 H 0.08 0.53 7.88 -2.38 -0.02 0.51 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.07 1.00 4.69 -2.39 -0.01 0.99 16 34 H 0.06 0.41 6.48 -2.39 -0.02 0.39 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.41 4.98 6.76 -92.71 -0.63 4.35 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.09 1.06 8.13 -2.39 -0.02 1.04 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.42 3.81 7.38 -92.71 -0.68 3.13 16 43 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 44 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 46 H 0.04 1.73 8.10 -2.38 -0.02 1.71 16 47 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 49 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -75.58 378.90 3.33 -72.26 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -0.37 Total: 12.13 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 4.61 Total: -14.88 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -2.84 Total: -78.57 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.10 Total: -37.48 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -75.58 3.33 -72.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594025795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.717 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds