Wall clock time and date at job start Fri Apr 10 2020 22:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00230 * 2 1 4 4 C 1.50704 * 109.47090 * 89.99519 * 3 2 1 5 5 C 1.29982 * 118.56290 * 95.00117 * 4 3 2 6 6 C 1.50389 * 122.51161 * 180.43182 * 5 4 3 7 7 C 1.53125 * 109.59556 * 343.37807 * 6 5 4 8 8 O 1.43308 * 108.41399 * 47.82310 * 7 6 5 9 9 C 1.42898 * 113.02169 * 291.85667 * 8 7 6 10 10 C 1.34785 * 119.99950 * 179.97438 * 2 1 3 11 11 O 1.21581 * 119.99759 * 180.02562 * 10 2 1 12 12 N 1.34768 * 119.99931 * 0.02562 * 10 2 1 13 13 C 1.46502 * 120.00248 * 179.97438 * 12 10 2 14 14 C 1.52995 * 109.47327 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47549 * 299.99976 * 14 13 12 16 16 C 1.53001 * 109.46995 * 60.00356 * 14 13 12 17 17 C 1.53001 * 109.46942 * 179.97438 * 14 13 12 18 18 C 1.50704 * 109.47113 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00163 * 0.02562 * 18 17 14 20 20 C 1.37879 * 120.00171 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00353 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99798 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47053 * 89.99910 * 22 20 18 24 24 H 1.48492 * 109.46984 * 210.00003 * 22 20 18 25 25 H 1.48493 * 109.47092 * 330.00176 * 22 20 18 26 26 H 1.08998 * 109.46951 * 90.00204 * 1 2 3 27 27 H 1.08998 * 109.46981 * 210.00005 * 1 2 3 28 28 H 1.08993 * 109.47231 * 329.99976 * 1 2 3 29 29 H 1.09002 * 109.46955 * 329.99983 * 3 2 1 30 30 H 1.08998 * 109.47428 * 209.99880 * 3 2 1 31 31 H 1.08004 * 118.74794 * 0.45617 * 5 4 3 32 32 H 1.08997 * 109.45433 * 223.33711 * 6 5 4 33 33 H 1.09003 * 109.42661 * 103.40157 * 6 5 4 34 34 H 1.09002 * 109.68336 * 167.56430 * 7 6 5 35 35 H 1.08999 * 109.68109 * 288.08078 * 7 6 5 36 36 H 1.09004 * 109.32593 * 289.92600 * 9 8 7 37 37 H 1.08996 * 109.25753 * 170.27764 * 9 8 7 38 38 H 0.97002 * 120.00119 * 359.97438 * 12 10 2 39 39 H 1.09004 * 109.46788 * 300.00322 * 13 12 10 40 40 H 1.09004 * 109.47029 * 59.99974 * 13 12 10 41 41 H 1.09002 * 109.47014 * 59.99806 * 15 14 13 42 42 H 1.09000 * 109.47250 * 179.97438 * 15 14 13 43 43 H 1.08999 * 109.47560 * 300.00109 * 15 14 13 44 44 H 1.09002 * 109.47247 * 59.99960 * 16 14 13 45 45 H 1.09009 * 109.47338 * 179.97438 * 16 14 13 46 46 H 1.08995 * 109.46902 * 299.99334 * 16 14 13 47 47 H 1.08995 * 109.47757 * 300.00582 * 17 14 13 48 48 H 1.09004 * 109.46988 * 60.00442 * 17 14 13 49 49 H 0.96995 * 120.00589 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 6 3.5840 1.3958 1.9737 6 6 3.9238 1.7765 3.3884 7 6 2.9689 2.8730 3.8686 8 8 1.6294 2.4813 3.5428 9 6 1.3757 2.4740 2.1366 10 6 2.1389 -1.1673 0.0005 11 8 3.3547 -1.1672 0.0010 12 7 1.4651 -2.3344 0.0005 13 6 2.1975 -3.6032 0.0005 14 6 1.2032 -4.7660 0.0012 15 6 0.3241 -4.6848 1.2507 16 6 0.3232 -4.6853 -1.2478 17 6 1.9682 -6.0911 0.0005 18 6 0.9889 -7.2365 0.0005 19 1 -0.0729 -7.0392 0.0005 20 6 1.4485 -8.5365 0.0005 21 7 0.5939 -9.5361 0.0000 22 14 3.2851 -8.8778 0.0012 23 1 3.7712 -8.9684 1.4015 24 1 3.5505 -10.1602 -0.6988 25 1 3.9936 -7.7761 -0.6983 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6085 2.0284 -0.5139 30 1 3.1500 1.1384 -0.5138 31 1 4.3113 0.8458 1.3949 32 1 4.9489 2.1446 3.4290 33 1 3.8262 0.9025 4.0324 34 1 3.0634 2.9955 4.9476 35 1 3.2082 3.8123 3.3702 36 1 1.3598 3.4995 1.7675 37 1 0.4089 2.0071 1.9482 38 1 0.4950 -2.3344 0.0005 39 1 2.8242 -3.6609 -0.8895 40 1 2.8242 -3.6609 0.8905 41 1 -0.2209 -3.7408 1.2507 42 1 -0.3845 -5.5130 1.2508 43 1 0.9510 -4.7423 2.1405 44 1 0.9496 -4.7432 -2.1380 45 1 -0.3849 -5.5140 -1.2476 46 1 -0.2218 -3.7414 -1.2478 47 1 2.5943 -6.1488 -0.8898 48 1 2.5955 -6.1489 0.8901 49 1 0.9172 -10.4506 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595628667.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:31 Heat of formation + Delta-G solvation = -65.121246 kcal Electronic energy + Delta-G solvation = -26650.719764 eV Core-core repulsion = 22999.153447 eV Total energy + Delta-G solvation = -3651.566317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.39656 -39.45189 -37.46359 -35.83513 -34.26731 -33.38617 -32.15617 -31.54914 -27.94392 -27.74726 -26.69003 -26.54576 -25.61421 -25.18577 -23.20092 -22.19539 -19.90837 -18.66809 -18.37961 -17.49119 -16.82830 -16.80441 -16.49529 -16.37754 -15.61050 -15.01596 -14.47298 -14.31466 -14.18630 -13.92697 -13.79747 -13.40358 -13.31745 -13.25102 -13.01642 -12.80745 -12.58199 -12.55344 -12.32920 -12.23667 -12.08817 -11.45586 -11.23371 -11.10791 -11.00019 -10.93472 -10.60502 -10.46060 -10.11935 -9.95473 -9.88884 -9.73807 -9.51942 -9.14587 -8.98041 -8.92887 -8.52708 -8.49429 -6.03343 -4.00501 1.78434 2.86374 3.32662 3.33180 3.40559 3.45042 3.58398 4.06871 4.43987 4.46787 4.50641 4.68011 4.81287 4.87564 4.97759 5.03535 5.13636 5.18314 5.26031 5.29572 5.34199 5.39021 5.48530 5.55921 5.57971 5.65863 5.67314 5.71945 6.12855 6.13531 6.16763 6.31405 6.34707 6.36771 6.53082 6.59500 6.60844 6.75411 6.82633 6.90588 6.98452 7.02594 7.06418 7.22016 7.38481 7.79009 8.06361 8.53705 8.72600 9.00696 9.59493 11.09408 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.002831 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.394647 B = 9888.713069 C =10265.854358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.633 5.633 3 C 0.175 3.825 4 C -0.199 4.199 5 C -0.112 4.112 6 C -0.130 4.130 7 C 0.058 3.942 8 O -0.378 6.378 9 C 0.102 3.898 10 C 0.704 3.296 11 O -0.592 6.592 12 N -0.736 5.736 13 C 0.144 3.856 14 C -0.063 4.063 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.002 4.002 18 C -0.510 4.510 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.395 0.605 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.029 0.971 47 H 0.018 0.982 48 H 0.014 0.986 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.594 26.819 2.701 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.371 5.371 3 C 0.051 3.949 4 C -0.200 4.200 5 C -0.131 4.131 6 C -0.167 4.167 7 C -0.018 4.018 8 O -0.297 6.297 9 C 0.025 3.975 10 C 0.405 3.595 11 O -0.471 6.471 12 N -0.392 5.392 13 C 0.020 3.980 14 C -0.063 4.063 15 C -0.185 4.185 16 C -0.184 4.184 17 C -0.039 4.039 18 C -0.548 4.548 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.544 5.544 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.232 0.768 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.037 0.963 48 H 0.032 0.968 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.323 26.538 2.813 26.719 hybrid contribution 0.672 -0.397 -0.164 0.798 sum 1.995 26.140 2.649 26.350 Atomic orbital electron populations 1.21758 0.80077 1.02990 1.01702 1.47038 1.06096 1.04773 1.79167 1.20160 0.98210 0.83820 0.92662 1.21975 0.96779 1.02812 0.98469 1.22323 0.97455 0.97455 0.95892 1.21171 1.00123 1.00212 0.95156 1.22649 0.82296 0.95937 1.00965 1.88134 1.29587 1.89442 1.22515 1.21342 0.97215 0.98227 0.80685 1.15917 0.85364 0.80389 0.77814 1.90873 1.11607 1.86280 1.58308 1.45467 1.10005 1.04851 1.78900 1.21491 0.94348 0.80583 1.01531 1.20694 0.95219 0.94714 0.95700 1.21761 0.99739 1.00081 0.96870 1.21760 0.99731 1.00102 0.96851 1.19587 0.96021 0.91796 0.96545 1.21081 0.94383 0.88988 1.50356 0.90400 1.24996 0.97339 0.96360 0.94736 1.69897 1.34074 0.98979 1.51407 0.86859 0.86651 0.77757 0.78518 1.20374 1.21529 1.18965 0.92494 0.91372 0.91041 0.90261 0.89150 0.86122 0.89884 0.89734 0.88620 0.92832 0.92224 0.88483 0.76813 0.92068 0.92135 0.95221 0.90900 0.93409 0.93401 0.90902 0.95171 0.96340 0.96802 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.20 59.85 0.61 1.23 16 2 N -0.63 -7.20 2.86 -188.75 -0.54 -7.74 16 3 C 0.17 1.72 5.46 -5.19 -0.03 1.69 16 4 C -0.20 -2.00 5.51 -101.01 -0.56 -2.56 16 5 C -0.11 -1.24 9.53 -35.89 -0.34 -1.58 16 6 C -0.13 -1.18 6.36 -27.97 -0.18 -1.36 16 7 C 0.06 0.48 6.89 37.22 0.26 0.74 16 8 O -0.38 -4.06 10.85 -35.23 -0.38 -4.44 16 9 C 0.10 0.89 6.76 35.78 0.24 1.13 16 10 C 0.70 10.80 8.28 -86.92 -0.72 10.08 16 11 O -0.59 -11.14 15.54 5.29 0.08 -11.06 16 12 N -0.74 -10.85 4.82 -65.22 -0.31 -11.17 16 13 C 0.14 2.50 4.56 -4.04 -0.02 2.48 16 14 C -0.06 -1.16 0.54 -154.51 -0.08 -1.25 16 15 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 16 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 17 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 18 C -0.51 -13.69 8.20 -34.44 -0.28 -13.97 16 19 H 0.08 2.21 5.92 -52.49 -0.31 1.89 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 22 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.55 6.36 -51.93 -0.33 0.22 16 28 H 0.07 0.42 6.47 -51.93 -0.34 0.09 16 29 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 30 H 0.09 1.03 7.14 -51.93 -0.37 0.66 16 31 H 0.12 1.55 7.45 -52.48 -0.39 1.16 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.77 6.54 -51.93 -0.34 0.43 16 38 H 0.40 5.01 3.89 -40.82 -0.16 4.85 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 42 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.42 6.62 -51.92 -0.34 1.07 16 46 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 47 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 48 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -32.87 376.47 -8.28 -41.15 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.21 Total: 2.70 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -0.69 Total: -5.54 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.08 Total: -45.44 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.30 Total: -15.50 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.87 -8.28 -41.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595628667.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.973 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds