Wall clock time and date at job start Fri Apr 10 2020 22:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00230 * 2 1 4 4 C 1.50704 * 109.47090 * 89.99519 * 3 2 1 5 5 C 1.29982 * 118.56290 * 95.00117 * 4 3 2 6 6 C 1.50389 * 122.51161 * 180.43182 * 5 4 3 7 7 C 1.53125 * 109.59556 * 343.37807 * 6 5 4 8 8 O 1.43308 * 108.41399 * 47.82310 * 7 6 5 9 9 C 1.42898 * 113.02169 * 291.85667 * 8 7 6 10 10 C 1.34785 * 119.99950 * 179.97438 * 2 1 3 11 11 O 1.21581 * 119.99759 * 180.02562 * 10 2 1 12 12 N 1.34768 * 119.99931 * 0.02562 * 10 2 1 13 13 C 1.46502 * 120.00248 * 179.97438 * 12 10 2 14 14 C 1.52995 * 109.47327 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47549 * 299.99976 * 14 13 12 16 16 C 1.53001 * 109.46995 * 60.00356 * 14 13 12 17 17 C 1.53001 * 109.46942 * 179.97438 * 14 13 12 18 18 C 1.50704 * 109.47113 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00163 * 0.02562 * 18 17 14 20 20 C 1.37879 * 120.00171 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00353 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99798 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47053 * 89.99910 * 22 20 18 24 24 H 1.48492 * 109.46984 * 210.00003 * 22 20 18 25 25 H 1.48493 * 109.47092 * 330.00176 * 22 20 18 26 26 H 1.08998 * 109.46951 * 90.00204 * 1 2 3 27 27 H 1.08998 * 109.46981 * 210.00005 * 1 2 3 28 28 H 1.08993 * 109.47231 * 329.99976 * 1 2 3 29 29 H 1.09002 * 109.46955 * 329.99983 * 3 2 1 30 30 H 1.08998 * 109.47428 * 209.99880 * 3 2 1 31 31 H 1.08004 * 118.74794 * 0.45617 * 5 4 3 32 32 H 1.08997 * 109.45433 * 223.33711 * 6 5 4 33 33 H 1.09003 * 109.42661 * 103.40157 * 6 5 4 34 34 H 1.09002 * 109.68336 * 167.56430 * 7 6 5 35 35 H 1.08999 * 109.68109 * 288.08078 * 7 6 5 36 36 H 1.09004 * 109.32593 * 289.92600 * 9 8 7 37 37 H 1.08996 * 109.25753 * 170.27764 * 9 8 7 38 38 H 0.97002 * 120.00119 * 359.97438 * 12 10 2 39 39 H 1.09004 * 109.46788 * 300.00322 * 13 12 10 40 40 H 1.09004 * 109.47029 * 59.99974 * 13 12 10 41 41 H 1.09002 * 109.47014 * 59.99806 * 15 14 13 42 42 H 1.09000 * 109.47250 * 179.97438 * 15 14 13 43 43 H 1.08999 * 109.47560 * 300.00109 * 15 14 13 44 44 H 1.09002 * 109.47247 * 59.99960 * 16 14 13 45 45 H 1.09009 * 109.47338 * 179.97438 * 16 14 13 46 46 H 1.08995 * 109.46902 * 299.99334 * 16 14 13 47 47 H 1.08995 * 109.47757 * 300.00582 * 17 14 13 48 48 H 1.09004 * 109.46988 * 60.00442 * 17 14 13 49 49 H 0.96995 * 120.00589 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 6 3.5840 1.3958 1.9737 6 6 3.9238 1.7765 3.3884 7 6 2.9689 2.8730 3.8686 8 8 1.6294 2.4813 3.5428 9 6 1.3757 2.4740 2.1366 10 6 2.1389 -1.1673 0.0005 11 8 3.3547 -1.1672 0.0010 12 7 1.4651 -2.3344 0.0005 13 6 2.1975 -3.6032 0.0005 14 6 1.2032 -4.7660 0.0012 15 6 0.3241 -4.6848 1.2507 16 6 0.3232 -4.6853 -1.2478 17 6 1.9682 -6.0911 0.0005 18 6 0.9889 -7.2365 0.0005 19 1 -0.0729 -7.0392 0.0005 20 6 1.4485 -8.5365 0.0005 21 7 0.5939 -9.5361 0.0000 22 14 3.2851 -8.8778 0.0012 23 1 3.7712 -8.9684 1.4015 24 1 3.5505 -10.1602 -0.6988 25 1 3.9936 -7.7761 -0.6983 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6085 2.0284 -0.5139 30 1 3.1500 1.1384 -0.5138 31 1 4.3113 0.8458 1.3949 32 1 4.9489 2.1446 3.4290 33 1 3.8262 0.9025 4.0324 34 1 3.0634 2.9955 4.9476 35 1 3.2082 3.8123 3.3702 36 1 1.3598 3.4995 1.7675 37 1 0.4089 2.0071 1.9482 38 1 0.4950 -2.3344 0.0005 39 1 2.8242 -3.6609 -0.8895 40 1 2.8242 -3.6609 0.8905 41 1 -0.2209 -3.7408 1.2507 42 1 -0.3845 -5.5130 1.2508 43 1 0.9510 -4.7423 2.1405 44 1 0.9496 -4.7432 -2.1380 45 1 -0.3849 -5.5140 -1.2476 46 1 -0.2218 -3.7414 -1.2478 47 1 2.5943 -6.1488 -0.8898 48 1 2.5955 -6.1489 0.8901 49 1 0.9172 -10.4506 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595628667.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:31 Heat of formation + Delta-G solvation = -86.151104 kcal Electronic energy + Delta-G solvation = -26651.631687 eV Core-core repulsion = 22999.153447 eV Total energy + Delta-G solvation = -3652.478240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44591 -40.27876 -38.88878 -36.85308 -35.42250 -34.70332 -33.84883 -32.37973 -29.75152 -28.55519 -28.00100 -27.87586 -26.36522 -26.22465 -24.39481 -23.61391 -21.08684 -19.98761 -19.12963 -18.93693 -18.67815 -17.60740 -17.45542 -17.16571 -16.58704 -16.32151 -15.83364 -15.57173 -15.50397 -15.15901 -14.89645 -14.71233 -14.40367 -14.20514 -14.18989 -14.04134 -13.75590 -13.70072 -13.33508 -13.19254 -12.95105 -12.85971 -12.84780 -12.61028 -12.31611 -12.18139 -12.13181 -11.77809 -11.59390 -11.52795 -11.37015 -11.15379 -10.91662 -10.70787 -10.61283 -10.15699 -9.92708 -9.45912 -8.22722 -6.22643 0.96094 1.35308 1.38092 1.48245 1.86617 2.16887 2.38741 2.95314 3.07202 3.12725 3.72412 3.76510 3.91242 4.01243 4.05402 4.14586 4.19890 4.24917 4.30487 4.41663 4.53260 4.54718 4.62259 4.65560 4.70604 4.73362 4.74731 4.81357 4.92640 4.94027 4.97708 5.00856 5.02454 5.08274 5.28591 5.35457 5.39565 5.48693 5.50236 5.53421 5.58415 5.68436 5.75745 5.82365 5.96219 6.17790 6.37832 6.83861 6.98238 7.40122 7.57785 8.92819 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.002831 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.394647 B = 9888.713069 C =10265.854358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.626 5.626 3 C 0.171 3.829 4 C -0.190 4.190 5 C -0.136 4.136 6 C -0.128 4.128 7 C 0.058 3.942 8 O -0.401 6.401 9 C 0.100 3.900 10 C 0.697 3.303 11 O -0.634 6.634 12 N -0.728 5.728 13 C 0.159 3.841 14 C -0.057 4.057 15 C -0.121 4.121 16 C -0.121 4.121 17 C -0.003 4.003 18 C -0.501 4.501 19 H 0.054 0.946 20 C 0.007 3.993 21 N -0.950 5.950 22 Si 0.933 3.067 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.253 1.253 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.407 0.593 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.044 0.956 45 H 0.047 0.953 46 H 0.067 0.933 47 H 0.015 0.985 48 H 0.011 0.989 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 29.806 2.719 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.362 5.362 3 C 0.048 3.952 4 C -0.192 4.192 5 C -0.156 4.156 6 C -0.165 4.165 7 C -0.018 4.018 8 O -0.320 6.320 9 C 0.024 3.976 10 C 0.398 3.602 11 O -0.515 6.515 12 N -0.385 5.385 13 C 0.034 3.966 14 C -0.057 4.057 15 C -0.179 4.179 16 C -0.179 4.179 17 C -0.041 4.041 18 C -0.539 4.539 19 H 0.072 0.928 20 C -0.189 4.189 21 N -0.592 5.592 22 Si 0.758 3.242 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.177 1.177 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.246 0.754 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.720 29.574 2.830 29.717 hybrid contribution 0.777 -1.249 -0.188 1.483 sum 1.497 28.324 2.642 28.487 Atomic orbital electron populations 1.22062 0.77512 1.04383 1.03333 1.47097 1.07659 1.03774 1.77689 1.20323 0.98007 0.83978 0.92851 1.22158 0.96644 1.01919 0.98434 1.22338 0.97773 0.98534 0.96921 1.21175 1.01475 1.00157 0.93680 1.22784 0.81064 0.95919 1.02064 1.88101 1.30666 1.89709 1.23557 1.21524 0.96848 0.99428 0.79830 1.16138 0.84996 0.81369 0.77712 1.90852 1.13637 1.86994 1.60049 1.45195 1.10372 1.03921 1.79039 1.21091 0.93735 0.81308 1.00455 1.20550 0.95319 0.92977 0.96900 1.21679 0.99142 1.01000 0.96055 1.21679 0.99127 1.01062 0.95987 1.19560 0.95500 0.92955 0.96076 1.21356 0.94163 0.90115 1.48263 0.92800 1.25806 1.01601 0.96462 0.95076 1.70030 1.36112 0.99415 1.53660 0.85919 0.81649 0.77841 0.78814 1.19781 1.21380 1.17673 0.90704 0.91355 0.88377 0.86409 0.91385 0.88907 0.88452 0.91262 0.87198 0.91223 0.89735 0.87265 0.75391 0.93106 0.93454 0.91614 0.93361 0.93930 0.93712 0.93404 0.91458 0.96708 0.97031 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 10.20 127.77 1.30 2.12 16 2 N -0.63 -12.65 2.86 -869.32 -2.48 -15.14 16 3 C 0.17 3.00 5.46 85.63 0.47 3.46 16 4 C -0.19 -3.48 5.51 -15.58 -0.09 -3.56 16 5 C -0.14 -2.99 9.53 26.60 0.25 -2.74 16 6 C -0.13 -2.25 6.36 29.79 0.19 -2.06 16 7 C 0.06 0.84 6.89 72.02 0.50 1.33 16 8 O -0.40 -7.62 10.85 -148.98 -1.62 -9.23 16 9 C 0.10 1.42 6.76 71.09 0.48 1.90 16 10 C 0.70 20.47 8.28 179.05 1.48 21.95 16 11 O -0.63 -23.98 15.54 -3.97 -0.06 -24.04 16 12 N -0.73 -20.05 4.82 -478.54 -2.31 -22.35 16 13 C 0.16 5.37 4.56 86.38 0.39 5.76 16 14 C -0.06 -2.06 0.54 -52.18 -0.03 -2.09 16 15 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 16 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 17 C 0.00 -0.14 3.11 29.85 0.09 -0.04 16 18 C -0.50 -27.34 8.20 25.60 0.21 -27.13 16 19 H 0.05 3.15 5.92 -2.91 -0.02 3.13 16 20 C 0.01 0.39 5.47 84.66 0.46 0.86 16 21 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 22 Si 0.93 44.87 27.47 68.60 1.88 46.76 16 23 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.25 -11.55 6.54 99.48 0.65 -10.90 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.83 6.36 -2.39 -0.02 0.81 16 28 H 0.10 0.67 6.47 -2.39 -0.02 0.66 16 29 H 0.12 1.16 8.06 -2.39 -0.02 1.14 16 30 H 0.07 1.52 7.14 -2.39 -0.02 1.51 16 31 H 0.09 2.53 7.45 -2.91 -0.02 2.51 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 0.78 8.10 -2.39 -0.02 0.76 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.11 1.27 6.54 -2.39 -0.02 1.25 16 38 H 0.41 9.02 3.89 -92.71 -0.36 8.66 16 39 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 42 H 0.05 1.88 6.62 -2.39 -0.02 1.87 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 44 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.05 1.85 6.62 -2.38 -0.02 1.83 16 46 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 47 H 0.01 0.68 7.20 -2.39 -0.02 0.67 16 48 H 0.01 0.53 7.57 -2.38 -0.02 0.51 16 49 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -73.69 376.47 3.11 -70.58 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.52 Total: 19.21 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 6.88 Total: -7.29 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -4.49 Total: -95.99 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.68 Total: -33.27 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.76 kcal Total: -73.69 3.11 -70.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595628667.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.572 kcal (2) G-P(sol) polarization free energy of solvation -73.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds