Wall clock time and date at job start Fri Apr 10 2020 22:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46812 * 2 1 4 4 C 1.52992 * 109.47488 * 239.99946 * 2 1 3 5 5 C 1.53003 * 109.47010 * 294.99917 * 4 2 1 6 6 N 1.46497 * 109.47200 * 180.02562 * 5 4 2 7 7 C 1.46505 * 120.00198 * 89.99995 * 6 5 4 8 8 C 1.50694 * 109.46977 * 89.99973 * 7 6 5 9 9 H 1.08006 * 120.00197 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99894 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00042 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46672 * 90.00325 * 12 10 8 14 14 H 1.48495 * 109.47190 * 210.00320 * 12 10 8 15 15 H 1.48500 * 109.46646 * 330.00273 * 12 10 8 16 16 C 1.34777 * 120.00318 * 270.00212 * 6 5 4 17 17 O 1.21283 * 119.99709 * 359.97438 * 16 6 5 18 18 C 1.50695 * 120.00593 * 180.02562 * 16 6 5 19 19 C 1.53001 * 109.47527 * 186.34168 * 18 16 6 20 20 H 1.09000 * 110.21644 * 307.45932 * 19 18 16 21 21 C 1.54482 * 110.24435 * 69.47864 * 19 18 16 22 22 C 1.54626 * 101.76789 * 144.41894 * 21 19 18 23 23 C 1.51291 * 104.19171 * 335.19906 * 22 21 19 24 24 O 1.21280 * 124.94295 * 196.22979 * 23 22 21 25 25 N 1.34421 * 110.11575 * 16.25778 * 23 22 21 26 26 C 1.46497 * 124.35005 * 180.42916 * 25 23 22 27 27 H 1.09003 * 109.46978 * 60.00351 * 1 2 3 28 28 H 1.08998 * 109.47443 * 300.00323 * 1 2 3 29 29 H 1.08999 * 109.46788 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46978 * 119.99649 * 2 1 3 31 31 H 1.08998 * 109.47380 * 59.99638 * 3 2 1 32 32 H 1.09007 * 109.47071 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47062 * 299.99598 * 3 2 1 34 34 H 1.09000 * 109.47270 * 55.00063 * 4 2 1 35 35 H 1.08997 * 109.47396 * 175.00076 * 4 2 1 36 36 H 1.09000 * 109.47223 * 300.00175 * 5 4 2 37 37 H 1.08997 * 109.46911 * 59.99863 * 5 4 2 38 38 H 1.09000 * 109.46874 * 210.00376 * 7 6 5 39 39 H 1.08994 * 109.46714 * 329.99884 * 7 6 5 40 40 H 0.97000 * 120.00124 * 179.97438 * 11 10 8 41 41 H 1.09004 * 109.46877 * 306.34507 * 18 16 6 42 42 H 1.08999 * 109.47223 * 66.34098 * 18 16 6 43 43 H 1.09000 * 110.97210 * 262.54099 * 21 19 18 44 44 H 1.09005 * 110.97112 * 26.29781 * 21 19 18 45 45 H 1.08996 * 110.48604 * 216.52820 * 22 21 19 46 46 H 1.08994 * 110.60108 * 93.93190 * 22 21 19 47 47 H 1.09002 * 109.46689 * 264.96721 * 26 25 23 48 48 H 1.09003 * 109.47017 * 24.95947 * 26 25 23 49 49 H 1.08998 * 109.47530 * 144.96475 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6354 -2.1955 -1.1878 6 7 2.1243 -2.8862 -2.3836 7 6 3.4526 -3.5042 -2.3810 8 6 3.3418 -4.9312 -1.9097 9 1 2.3782 -5.3375 -1.6395 10 6 4.4703 -5.7187 -1.8243 11 7 5.6436 -5.2243 -2.1538 12 14 4.3331 -7.4875 -1.2394 13 1 4.1024 -8.3779 -2.4053 14 1 5.5912 -7.8821 -0.5565 15 1 3.1964 -7.6085 -0.2915 16 6 1.3522 -2.9532 -3.4863 17 8 0.2523 -2.4420 -3.4884 18 6 1.8548 -3.6643 -4.7162 19 6 0.8639 -3.4604 -5.8640 20 1 -0.1411 -3.7402 -5.5482 21 6 0.8879 -1.9896 -6.3360 22 6 0.6682 -2.1434 -7.8588 23 6 1.1634 -3.5397 -8.1658 24 8 1.4266 -3.9553 -9.2743 25 7 1.2686 -4.2527 -7.0312 26 6 1.7288 -5.6421 -6.9678 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6055 -0.2617 -2.1369 35 1 3.1264 -0.6443 -1.2950 36 1 2.0699 -2.6549 -0.3001 37 1 0.5491 -2.2724 -1.1419 38 1 3.8639 -3.4857 -3.3903 39 1 4.1097 -2.9502 -1.7107 40 1 6.4376 -5.7781 -2.0934 41 1 2.8264 -3.2589 -4.9986 42 1 1.9527 -4.7292 -4.5057 43 1 0.0775 -1.4205 -5.8805 44 1 1.8527 -1.5281 -6.1257 45 1 1.2522 -1.4029 -8.4052 46 1 -0.3895 -2.0511 -8.1049 47 1 0.8680 -6.3107 -6.9771 48 1 2.3630 -5.8544 -7.8285 49 1 2.2977 -5.7950 -6.0507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597143602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:33 Heat of formation + Delta-G solvation = -94.597676 kcal Electronic energy + Delta-G solvation = -27043.553143 eV Core-core repulsion = 23390.708632 eV Total energy + Delta-G solvation = -3652.844511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.48072 -39.13873 -36.84185 -36.19981 -34.80711 -32.67599 -32.59278 -31.04625 -29.03882 -27.07363 -27.02574 -26.47592 -25.13582 -23.23299 -22.77325 -21.28365 -19.79964 -19.20137 -18.35490 -17.02409 -16.65571 -16.28645 -16.01328 -15.41366 -15.06739 -14.86754 -14.73431 -14.40636 -13.95483 -13.75282 -13.44705 -13.39851 -13.19872 -12.70822 -12.60679 -12.47055 -12.30515 -12.15727 -12.05486 -11.98081 -11.72690 -11.71720 -11.37683 -11.08002 -11.01541 -10.94069 -10.81726 -10.77493 -10.61716 -10.52751 -10.31052 -10.07107 -9.80622 -9.69165 -9.16054 -8.64006 -8.56108 -7.78862 -6.26740 -4.34946 2.69867 3.11625 3.16009 3.24211 3.25518 3.32227 3.86391 4.25906 4.45319 4.61742 4.87576 5.01240 5.06356 5.08930 5.10588 5.13140 5.32904 5.35861 5.45288 5.53704 5.65618 5.66197 5.69231 5.75071 5.79491 5.85793 5.87912 5.94990 5.95592 5.98356 6.07230 6.09014 6.18071 6.22603 6.29798 6.31369 6.35878 6.57832 6.63802 6.64065 6.71645 7.09109 7.25213 7.45079 7.67731 7.96506 8.25211 8.29056 8.69849 8.91540 9.33767 10.79734 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.007694 B = 0.005642 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.497160 B = 4961.562828 C = 7960.141178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.593 5.593 7 C 0.236 3.764 8 C -0.540 4.540 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.895 3.105 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.522 3.478 17 O -0.574 6.574 18 C -0.144 4.144 19 C 0.146 3.854 20 H 0.090 0.910 21 C -0.121 4.121 22 C -0.155 4.155 23 C 0.516 3.484 24 O -0.545 6.545 25 N -0.615 5.615 26 C 0.088 3.912 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.266 0.734 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.055 0.945 48 H 0.075 0.925 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 7.977 -1.279 10.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.322 5.322 7 C 0.116 3.884 8 C -0.579 4.579 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.527 5.527 12 Si 0.722 3.278 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.310 3.690 17 O -0.456 6.456 18 C -0.185 4.185 19 C 0.043 3.957 20 H 0.108 0.892 21 C -0.159 4.159 22 C -0.195 4.195 23 C 0.304 3.696 24 O -0.423 6.423 25 N -0.348 5.348 26 C -0.054 4.054 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.116 0.884 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.464 7.870 -1.845 11.002 hybrid contribution 0.337 -1.219 0.549 1.379 sum -7.127 6.651 -1.296 9.834 Atomic orbital electron populations 1.21870 0.95344 1.02030 1.01127 1.21051 0.95833 0.95903 0.98534 1.21823 1.00907 0.96210 1.01276 1.21981 1.01010 0.95923 0.97602 1.21361 0.99838 0.90997 0.88207 1.48216 1.19267 1.52981 1.11727 1.19449 0.77588 0.92838 0.98487 1.21475 0.94128 0.96433 1.45851 0.92111 1.24937 0.95075 0.98733 0.94956 1.69912 0.98514 1.36874 1.47448 0.86542 0.77709 0.84427 0.79105 1.20416 1.21030 1.19785 1.20126 0.84573 0.79655 0.84679 1.90589 1.21217 1.49586 1.84205 1.21905 0.99858 1.03936 0.92760 1.21495 0.98643 0.90816 0.84789 0.89165 1.22653 1.04204 0.95648 0.93350 1.22360 1.03623 0.95425 0.98127 1.20918 0.76773 0.88152 0.83790 1.90689 1.51857 1.76076 1.23661 1.48271 1.65299 1.13224 1.08014 1.21640 0.99758 0.80232 1.03759 0.92766 0.93340 0.92283 0.91232 0.93081 0.92785 0.92905 0.91961 0.91910 0.90705 0.90778 0.94450 0.94615 0.92434 0.88619 0.87422 0.88430 0.90232 0.88304 0.88029 0.92663 0.90631 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.95 37.16 0.33 -1.38 16 2 C -0.09 -1.15 2.92 -90.62 -0.26 -1.41 16 3 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 4 C -0.13 -1.85 5.01 -26.73 -0.13 -1.99 16 5 C 0.12 2.03 5.16 -4.04 -0.02 2.01 16 6 N -0.59 -11.33 2.46 -175.06 -0.43 -11.76 16 7 C 0.24 5.20 4.99 -5.19 -0.03 5.17 16 8 C -0.54 -13.20 9.39 -34.44 -0.32 -13.52 16 9 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 10 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -23.52 13.29 55.43 0.74 -22.79 16 12 Si 0.89 19.73 29.54 -169.99 -5.02 14.70 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.52 9.55 7.42 -10.99 -0.08 9.47 16 17 O -0.57 -11.01 14.74 5.56 0.08 -10.93 16 18 C -0.14 -2.34 3.67 -27.88 -0.10 -2.44 16 19 C 0.15 2.08 2.93 -67.01 -0.20 1.88 16 20 H 0.09 1.33 7.80 -51.93 -0.40 0.92 16 21 C -0.12 -1.49 5.93 -25.10 -0.15 -1.64 16 22 C -0.16 -1.82 6.86 -26.74 -0.18 -2.00 16 23 C 0.52 7.93 8.02 -10.86 -0.09 7.84 16 24 O -0.54 -10.21 17.53 5.56 0.10 -10.11 16 25 N -0.61 -8.96 3.18 -172.70 -0.55 -9.51 16 26 C 0.09 1.19 10.73 59.85 0.64 1.83 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.73 6.56 -51.93 -0.34 0.39 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 37 H 0.07 1.27 5.84 -51.93 -0.30 0.97 16 38 H 0.04 0.85 6.27 -51.93 -0.33 0.52 16 39 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.10 1.57 6.90 -51.93 -0.36 1.21 16 42 H 0.11 1.85 6.64 -51.93 -0.34 1.51 16 43 H 0.10 1.19 7.88 -51.93 -0.41 0.78 16 44 H 0.08 0.98 7.80 -51.93 -0.41 0.58 16 45 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.07 1.04 7.82 -51.93 -0.41 0.63 16 49 H 0.08 1.10 6.37 -51.93 -0.33 0.76 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -28.62 390.40 -8.21 -36.84 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.66 Total: 3.50 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.35 Total: 4.18 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.24 Total: -44.06 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.18 Total: -21.04 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.62 -8.21 -36.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597143602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.759 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds