Wall clock time and date at job start Fri Apr 10 2020 22:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46812 * 2 1 4 4 C 1.52992 * 109.47488 * 239.99946 * 2 1 3 5 5 C 1.53003 * 109.47010 * 294.99917 * 4 2 1 6 6 N 1.46497 * 109.47200 * 180.02562 * 5 4 2 7 7 C 1.46505 * 120.00198 * 89.99995 * 6 5 4 8 8 C 1.50694 * 109.46977 * 89.99973 * 7 6 5 9 9 H 1.08006 * 120.00197 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99894 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00042 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46672 * 90.00325 * 12 10 8 14 14 H 1.48495 * 109.47190 * 210.00320 * 12 10 8 15 15 H 1.48500 * 109.46646 * 330.00273 * 12 10 8 16 16 C 1.34777 * 120.00318 * 270.00212 * 6 5 4 17 17 O 1.21283 * 119.99709 * 359.97438 * 16 6 5 18 18 C 1.50695 * 120.00593 * 180.02562 * 16 6 5 19 19 C 1.53001 * 109.47527 * 186.34168 * 18 16 6 20 20 H 1.09000 * 110.21644 * 307.45932 * 19 18 16 21 21 C 1.54482 * 110.24435 * 69.47864 * 19 18 16 22 22 C 1.54626 * 101.76789 * 144.41894 * 21 19 18 23 23 C 1.51291 * 104.19171 * 335.19906 * 22 21 19 24 24 O 1.21280 * 124.94295 * 196.22979 * 23 22 21 25 25 N 1.34421 * 110.11575 * 16.25778 * 23 22 21 26 26 C 1.46497 * 124.35005 * 180.42916 * 25 23 22 27 27 H 1.09003 * 109.46978 * 60.00351 * 1 2 3 28 28 H 1.08998 * 109.47443 * 300.00323 * 1 2 3 29 29 H 1.08999 * 109.46788 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46978 * 119.99649 * 2 1 3 31 31 H 1.08998 * 109.47380 * 59.99638 * 3 2 1 32 32 H 1.09007 * 109.47071 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47062 * 299.99598 * 3 2 1 34 34 H 1.09000 * 109.47270 * 55.00063 * 4 2 1 35 35 H 1.08997 * 109.47396 * 175.00076 * 4 2 1 36 36 H 1.09000 * 109.47223 * 300.00175 * 5 4 2 37 37 H 1.08997 * 109.46911 * 59.99863 * 5 4 2 38 38 H 1.09000 * 109.46874 * 210.00376 * 7 6 5 39 39 H 1.08994 * 109.46714 * 329.99884 * 7 6 5 40 40 H 0.97000 * 120.00124 * 179.97438 * 11 10 8 41 41 H 1.09004 * 109.46877 * 306.34507 * 18 16 6 42 42 H 1.08999 * 109.47223 * 66.34098 * 18 16 6 43 43 H 1.09000 * 110.97210 * 262.54099 * 21 19 18 44 44 H 1.09005 * 110.97112 * 26.29781 * 21 19 18 45 45 H 1.08996 * 110.48604 * 216.52820 * 22 21 19 46 46 H 1.08994 * 110.60108 * 93.93190 * 22 21 19 47 47 H 1.09002 * 109.46689 * 264.96721 * 26 25 23 48 48 H 1.09003 * 109.47017 * 24.95947 * 26 25 23 49 49 H 1.08998 * 109.47530 * 144.96475 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6354 -2.1955 -1.1878 6 7 2.1243 -2.8862 -2.3836 7 6 3.4526 -3.5042 -2.3810 8 6 3.3418 -4.9312 -1.9097 9 1 2.3782 -5.3375 -1.6395 10 6 4.4703 -5.7187 -1.8243 11 7 5.6436 -5.2243 -2.1538 12 14 4.3331 -7.4875 -1.2394 13 1 4.1024 -8.3779 -2.4053 14 1 5.5912 -7.8821 -0.5565 15 1 3.1964 -7.6085 -0.2915 16 6 1.3522 -2.9532 -3.4863 17 8 0.2523 -2.4420 -3.4884 18 6 1.8548 -3.6643 -4.7162 19 6 0.8639 -3.4604 -5.8640 20 1 -0.1411 -3.7402 -5.5482 21 6 0.8879 -1.9896 -6.3360 22 6 0.6682 -2.1434 -7.8588 23 6 1.1634 -3.5397 -8.1658 24 8 1.4266 -3.9553 -9.2743 25 7 1.2686 -4.2527 -7.0312 26 6 1.7288 -5.6421 -6.9678 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6055 -0.2617 -2.1369 35 1 3.1264 -0.6443 -1.2950 36 1 2.0699 -2.6549 -0.3001 37 1 0.5491 -2.2724 -1.1419 38 1 3.8639 -3.4857 -3.3903 39 1 4.1097 -2.9502 -1.7107 40 1 6.4376 -5.7781 -2.0934 41 1 2.8264 -3.2589 -4.9986 42 1 1.9527 -4.7292 -4.5057 43 1 0.0775 -1.4205 -5.8805 44 1 1.8527 -1.5281 -6.1257 45 1 1.2522 -1.4029 -8.4052 46 1 -0.3895 -2.0511 -8.1049 47 1 0.8680 -6.3107 -6.9771 48 1 2.3630 -5.8544 -7.8285 49 1 2.2977 -5.7950 -6.0507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597143602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:33 Heat of formation + Delta-G solvation = -108.951482 kcal Electronic energy + Delta-G solvation = -27044.175570 eV Core-core repulsion = 23390.708632 eV Total energy + Delta-G solvation = -3653.466938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.71254 -40.57987 -38.06969 -37.43369 -36.34915 -34.46945 -33.70416 -32.35196 -30.40333 -28.76218 -27.96630 -27.58116 -26.33450 -24.97172 -24.08544 -22.45317 -20.85081 -20.37862 -19.85024 -18.59632 -18.28140 -17.56011 -17.36541 -16.88136 -16.36399 -16.22144 -16.09127 -15.86939 -15.09278 -14.80873 -14.72352 -14.53792 -14.42397 -14.25373 -13.88576 -13.81795 -13.65847 -13.43517 -13.24593 -13.13869 -13.06668 -12.83666 -12.77198 -12.72784 -12.48522 -12.22705 -12.05374 -11.94680 -11.92266 -11.83037 -11.54633 -11.49301 -11.36372 -10.93588 -10.72097 -10.51471 -9.77370 -9.39604 -8.20366 -6.34954 1.40616 1.44126 1.50708 1.52080 1.79801 1.93933 2.34890 2.49310 3.10273 3.34533 3.52709 3.75173 3.84043 4.00545 4.03191 4.08862 4.12242 4.22081 4.36863 4.37910 4.44126 4.54086 4.61965 4.67921 4.74571 4.79195 4.82660 4.84311 4.86179 4.90883 4.98002 5.00476 5.07042 5.10158 5.16566 5.18109 5.19358 5.24293 5.36923 5.46511 5.51273 5.54491 5.66845 5.87732 6.06244 6.08892 6.59761 6.83157 7.09489 7.31647 7.43086 8.84605 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.007694 B = 0.005642 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.497160 B = 4961.562828 C = 7960.141178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.115 4.115 5 C 0.118 3.882 6 N -0.598 5.598 7 C 0.253 3.747 8 C -0.544 4.544 9 H 0.053 0.947 10 C 0.025 3.975 11 N -0.919 5.919 12 Si 0.951 3.049 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.521 3.479 17 O -0.579 6.579 18 C -0.136 4.136 19 C 0.151 3.849 20 H 0.090 0.910 21 C -0.114 4.114 22 C -0.142 4.142 23 C 0.507 3.493 24 O -0.584 6.584 25 N -0.616 5.616 26 C 0.084 3.916 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.030 0.970 39 H 0.018 0.982 40 H 0.267 0.733 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.124 0.876 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.366 8.723 -0.916 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.154 4.154 5 C -0.005 4.005 6 N -0.328 5.328 7 C 0.132 3.868 8 C -0.583 4.583 9 H 0.071 0.929 10 C -0.176 4.176 11 N -0.558 5.558 12 Si 0.776 3.224 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.310 3.690 17 O -0.461 6.461 18 C -0.177 4.177 19 C 0.047 3.953 20 H 0.108 0.892 21 C -0.152 4.152 22 C -0.182 4.182 23 C 0.297 3.703 24 O -0.465 6.465 25 N -0.348 5.348 26 C -0.057 4.057 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.134 0.866 46 H 0.142 0.858 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.553 8.627 -1.459 12.235 hybrid contribution 0.647 -1.457 0.478 1.664 sum -7.906 7.170 -0.982 10.718 Atomic orbital electron populations 1.21836 0.94698 1.01557 1.01939 1.21050 0.96335 0.96677 0.97064 1.21792 1.00831 0.95058 1.02203 1.21869 1.00326 0.94429 0.98770 1.21465 0.99615 0.92252 0.87142 1.48211 1.18458 1.53311 1.12809 1.19058 0.78672 0.91737 0.97337 1.21666 0.93706 0.97521 1.45380 0.92858 1.25589 0.94819 1.02062 0.95122 1.70000 0.99066 1.38139 1.48586 0.85663 0.77497 0.80480 0.78724 1.19786 1.20980 1.19628 1.20379 0.84326 0.79430 0.84862 1.90580 1.21334 1.49873 1.84361 1.21823 1.00276 1.02828 0.92730 1.21461 0.97696 0.92177 0.83942 0.89219 1.22629 1.04570 0.94139 0.93861 1.22377 1.05128 0.93234 0.97451 1.21550 0.76106 0.89489 0.83189 1.90666 1.53669 1.77122 1.25025 1.48402 1.64808 1.13530 1.08102 1.21699 1.00317 0.80345 1.03362 0.93020 0.91460 0.93376 0.91127 0.91419 0.92932 0.92720 0.92586 0.92867 0.91515 0.90789 0.95182 0.96360 0.92392 0.88954 0.88522 0.87662 0.90210 0.86591 0.85771 0.91247 0.91091 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.95 71.98 0.64 -2.45 16 2 C -0.09 -2.13 2.92 -10.80 -0.03 -2.16 16 3 C -0.14 -2.76 9.19 71.98 0.66 -2.10 16 4 C -0.12 -3.33 5.01 30.59 0.15 -3.18 16 5 C 0.12 4.01 5.16 86.38 0.45 4.45 16 6 N -0.60 -22.98 2.46 -826.17 -2.03 -25.01 16 7 C 0.25 11.31 4.99 85.63 0.43 11.74 16 8 C -0.54 -26.74 9.39 25.60 0.24 -26.50 16 9 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 10 C 0.02 1.24 5.46 84.66 0.46 1.71 16 11 N -0.92 -48.88 13.29 21.45 0.28 -48.59 16 12 Si 0.95 40.23 29.54 68.60 2.03 42.26 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 C 0.52 18.87 7.42 87.66 0.65 19.52 16 17 O -0.58 -21.60 14.74 -3.04 -0.04 -21.65 16 18 C -0.14 -4.39 3.67 29.85 0.11 -4.28 16 19 C 0.15 4.12 2.93 45.45 0.13 4.25 16 20 H 0.09 2.51 7.80 -2.39 -0.02 2.49 16 21 C -0.11 -2.60 5.93 31.65 0.19 -2.42 16 22 C -0.14 -2.99 6.86 30.59 0.21 -2.78 16 23 C 0.51 15.05 8.02 87.90 0.71 15.75 16 24 O -0.58 -21.66 17.53 -3.03 -0.05 -21.71 16 25 N -0.62 -17.49 3.18 -818.88 -2.61 -20.10 16 26 C 0.08 2.27 10.73 127.77 1.37 3.64 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.13 6.56 -2.39 -0.02 1.12 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 37 H 0.07 2.52 5.84 -2.39 -0.01 2.50 16 38 H 0.03 1.39 6.27 -2.39 -0.01 1.38 16 39 H 0.02 0.88 8.07 -2.39 -0.02 0.86 16 40 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 41 H 0.09 3.04 6.90 -2.39 -0.02 3.02 16 42 H 0.10 3.34 6.64 -2.39 -0.02 3.33 16 43 H 0.10 2.30 7.88 -2.39 -0.02 2.28 16 44 H 0.08 1.83 7.80 -2.38 -0.02 1.82 16 45 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.07 1.96 7.82 -2.39 -0.02 1.94 16 49 H 0.08 2.12 6.37 -2.39 -0.02 2.11 16 Total: -1.00 -60.15 390.40 4.86 -55.29 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.91 Total: 24.33 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.37 Total: 15.19 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -4.35 Total: -93.70 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.10 Total: -43.36 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -60.15 4.86 -55.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597143602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.661 kcal (2) G-P(sol) polarization free energy of solvation -60.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds