Wall clock time and date at job start Fri Apr 10 2020 22:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.46960 * 2 1 4 4 C 1.53001 * 109.46854 * 120.00205 * 2 1 3 5 5 C 1.53003 * 109.47415 * 65.00148 * 4 2 1 6 6 N 1.46499 * 109.47264 * 179.97438 * 5 4 2 7 7 C 1.46499 * 119.99660 * 270.00100 * 6 5 4 8 8 C 1.50706 * 109.46915 * 269.99374 * 7 6 5 9 9 H 1.08001 * 120.00000 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99874 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00235 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99814 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47379 * 60.00071 * 12 10 8 14 14 H 1.48503 * 109.46990 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47021 * 299.99658 * 12 10 8 16 16 C 1.34773 * 120.00084 * 89.99407 * 6 5 4 17 17 O 1.21283 * 119.99969 * 0.02562 * 16 6 5 18 18 C 1.50701 * 120.00037 * 180.02562 * 16 6 5 19 19 C 1.53003 * 109.47377 * 174.49256 * 18 16 6 20 20 H 1.09001 * 110.28165 * 52.54554 * 19 18 16 21 21 C 1.54482 * 110.24344 * 290.57676 * 19 18 16 22 22 C 1.54629 * 101.76482 * 215.58123 * 21 19 18 23 23 C 1.51289 * 104.19176 * 24.79381 * 22 21 19 24 24 O 1.21286 * 124.93875 * 163.78118 * 23 22 21 25 25 N 1.34417 * 110.11772 * 343.75015 * 23 22 21 26 26 C 1.46499 * 124.34773 * 179.56700 * 25 23 22 27 27 H 1.08997 * 109.47462 * 299.99990 * 1 2 3 28 28 H 1.09004 * 109.47207 * 60.00370 * 1 2 3 29 29 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46761 * 239.99820 * 2 1 3 31 31 H 1.09006 * 109.46980 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47509 * 299.99561 * 3 2 1 33 33 H 1.09000 * 109.47530 * 60.00292 * 3 2 1 34 34 H 1.08990 * 109.47157 * 304.99647 * 4 2 1 35 35 H 1.08998 * 109.46896 * 185.00000 * 4 2 1 36 36 H 1.09001 * 109.46966 * 59.99359 * 5 4 2 37 37 H 1.09003 * 109.46501 * 299.99774 * 5 4 2 38 38 H 1.08997 * 109.47621 * 29.99644 * 7 6 5 39 39 H 1.09007 * 109.46856 * 150.00188 * 7 6 5 40 40 H 0.97007 * 120.00096 * 180.02562 * 11 10 8 41 41 H 1.08998 * 109.47133 * 54.49595 * 18 16 6 42 42 H 1.09005 * 109.47106 * 294.49190 * 18 16 6 43 43 H 1.08996 * 110.97221 * 97.46377 * 21 19 18 44 44 H 1.09005 * 110.96950 * 333.69789 * 21 19 18 45 45 H 1.08997 * 110.48783 * 266.12078 * 22 21 19 46 46 H 1.08991 * 110.48840 * 143.47352 * 22 21 19 47 47 H 1.08997 * 109.47315 * 5.10636 * 26 25 23 48 48 H 1.08998 * 109.46974 * 125.10579 * 26 25 23 49 49 H 1.09003 * 109.47205 * 245.10145 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6352 -2.1956 1.1880 6 7 2.1240 -2.8863 2.3838 7 6 3.4523 -3.5043 2.3812 8 6 3.3414 -4.9314 1.9100 9 1 2.3780 -5.3374 1.6391 10 6 4.4700 -5.7188 1.8246 11 7 5.6432 -5.2244 2.1540 12 14 4.3326 -7.4876 1.2398 13 1 3.7732 -7.5123 -0.1356 14 1 5.6791 -8.1141 1.2373 15 1 3.4366 -8.2425 2.1523 16 6 1.3518 -2.9532 3.4864 17 8 0.2520 -2.4419 3.4884 18 6 1.8549 -3.6633 4.7167 19 6 0.8536 -3.4768 5.8585 20 1 -0.1461 -3.7677 5.5357 21 6 0.8548 -2.0076 6.3359 22 6 0.6268 -2.1701 7.8567 23 6 1.1383 -3.5608 8.1619 24 8 1.3992 -3.9771 9.2708 25 7 1.2608 -4.2681 7.0254 26 6 1.7398 -5.6511 6.9601 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1262 -0.6444 1.2952 36 1 2.0698 -2.6550 0.3002 37 1 0.5488 -2.2724 1.1420 38 1 4.1095 -2.9503 1.7109 39 1 3.8635 -3.4859 3.3906 40 1 6.4373 -5.7783 2.0936 41 1 2.8193 -3.2469 5.0077 42 1 1.9676 -4.7261 4.5023 43 1 0.0400 -1.4476 5.8771 44 1 1.8149 -1.5326 6.1340 45 1 -0.4343 -2.0934 8.0937 46 1 1.1972 -1.4240 8.4098 47 1 1.8885 -6.0322 7.9704 48 1 1.0029 -6.2668 6.4443 49 1 2.6842 -5.6832 6.4169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597143603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:36 Heat of formation + Delta-G solvation = -95.459462 kcal Electronic energy + Delta-G solvation = -27041.706134 eV Core-core repulsion = 23388.824254 eV Total energy + Delta-G solvation = -3652.881881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47667 -39.13678 -36.83877 -36.19604 -34.80260 -32.67396 -32.58756 -31.03042 -29.03399 -27.07128 -27.02235 -26.46884 -25.13214 -23.22711 -22.75992 -21.28889 -19.79865 -19.20318 -18.34720 -17.01522 -16.65297 -16.29173 -16.01092 -15.42190 -15.05571 -14.84349 -14.69916 -14.39087 -13.95272 -13.76186 -13.44036 -13.38089 -13.20693 -12.71289 -12.59350 -12.46361 -12.29975 -12.15662 -12.06564 -11.96236 -11.74248 -11.71745 -11.37735 -11.09106 -11.01564 -10.92871 -10.81646 -10.75867 -10.62650 -10.52841 -10.30921 -10.06970 -9.81581 -9.70675 -9.15313 -8.63205 -8.55445 -7.78536 -6.26071 -4.34348 2.69658 3.11846 3.17953 3.24302 3.24454 3.32493 3.86899 4.26380 4.45014 4.62679 4.88110 5.01400 5.06876 5.09113 5.10672 5.14075 5.33885 5.36299 5.44378 5.53221 5.65471 5.67611 5.69348 5.75829 5.79637 5.86149 5.92022 5.95089 5.95888 5.98526 6.07412 6.09250 6.17821 6.22695 6.30025 6.31793 6.36019 6.57885 6.63841 6.64281 6.71982 7.09434 7.25022 7.45463 7.68163 7.97006 8.25633 8.28931 8.70093 8.91960 9.34260 10.80384 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.007699 B = 0.005640 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3636.059373 B = 4963.749805 C = 7964.799021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.593 5.593 7 C 0.237 3.763 8 C -0.541 4.541 9 H 0.060 0.940 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.895 3.105 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.522 3.478 17 O -0.574 6.574 18 C -0.143 4.143 19 C 0.147 3.853 20 H 0.090 0.910 21 C -0.121 4.121 22 C -0.155 4.155 23 C 0.516 3.484 24 O -0.546 6.546 25 N -0.615 5.615 26 C 0.088 3.912 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.266 0.734 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.387 7.914 1.360 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.322 5.322 7 C 0.117 3.883 8 C -0.579 4.579 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.723 3.277 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.310 3.690 17 O -0.456 6.456 18 C -0.183 4.183 19 C 0.043 3.957 20 H 0.108 0.892 21 C -0.159 4.159 22 C -0.195 4.195 23 C 0.304 3.696 24 O -0.424 6.424 25 N -0.348 5.348 26 C -0.054 4.054 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.082 0.918 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.546 7.805 1.930 11.027 hybrid contribution 0.337 -1.211 -0.578 1.383 sum -7.209 6.594 1.352 9.863 Atomic orbital electron populations 1.21870 0.95345 1.02028 1.01125 1.21050 0.95832 0.95903 0.98535 1.21821 1.00908 0.96210 1.01274 1.21981 1.01010 0.95926 0.97599 1.21361 0.99835 0.90999 0.88212 1.48214 1.19269 1.52980 1.11730 1.19444 0.77584 0.92814 0.98481 1.21437 0.94107 0.96460 1.45921 0.92170 1.24932 0.95077 0.98725 0.94944 1.69906 0.98513 1.36994 1.47358 0.86595 0.77319 0.84278 0.79524 1.20120 1.21106 1.20054 1.20139 0.84571 0.79636 0.84696 1.90588 1.21231 1.49585 1.84220 1.21885 0.99697 1.04009 0.92736 1.21494 0.98516 0.90853 0.84828 0.89195 1.22657 1.04207 0.95663 0.93339 1.22365 1.03520 0.95485 0.98169 1.20920 0.76796 0.88097 0.83796 1.90689 1.52331 1.75667 1.23690 1.48267 1.64859 1.13779 1.07909 1.21615 0.99907 0.80583 1.03273 0.92760 0.93349 0.92286 0.91233 0.92787 0.93083 0.92904 0.91962 0.91914 0.90711 0.90780 0.94626 0.94453 0.92382 0.88680 0.87446 0.88409 0.90253 0.88029 0.88298 0.90232 0.91780 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.95 37.16 0.33 -1.38 16 2 C -0.09 -1.15 2.92 -90.62 -0.26 -1.42 16 3 C -0.14 -1.56 9.19 37.15 0.34 -1.21 16 4 C -0.13 -1.86 5.01 -26.73 -0.13 -1.99 16 5 C 0.12 2.03 5.16 -4.04 -0.02 2.01 16 6 N -0.59 -11.37 2.46 -175.05 -0.43 -11.80 16 7 C 0.24 5.23 4.99 -5.19 -0.03 5.20 16 8 C -0.54 -13.25 9.39 -34.44 -0.32 -13.57 16 9 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -23.58 13.29 55.43 0.74 -22.84 16 12 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 16 C 0.52 9.58 7.42 -10.99 -0.08 9.50 16 17 O -0.57 -11.03 14.70 5.55 0.08 -10.95 16 18 C -0.14 -2.33 3.66 -27.88 -0.10 -2.43 16 19 C 0.15 2.09 2.93 -67.01 -0.20 1.89 16 20 H 0.09 1.32 7.81 -51.93 -0.41 0.92 16 21 C -0.12 -1.50 5.92 -25.10 -0.15 -1.65 16 22 C -0.16 -1.82 6.86 -26.74 -0.18 -2.00 16 23 C 0.52 7.91 8.02 -10.86 -0.09 7.83 16 24 O -0.55 -10.19 17.36 5.55 0.10 -10.09 16 25 N -0.61 -8.96 3.18 -172.70 -0.55 -9.51 16 26 C 0.09 1.19 10.20 59.85 0.61 1.80 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.30 8.07 -51.93 -0.42 0.89 16 37 H 0.07 1.27 5.85 -51.93 -0.30 0.97 16 38 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 39 H 0.04 0.85 6.29 -51.93 -0.33 0.52 16 40 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.09 1.57 6.95 -51.93 -0.36 1.21 16 42 H 0.11 1.87 7.30 -51.93 -0.38 1.49 16 43 H 0.10 1.19 7.85 -51.93 -0.41 0.79 16 44 H 0.08 0.98 7.80 -51.93 -0.41 0.58 16 45 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.07 7.55 -51.93 -0.39 0.68 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.07 0.95 7.71 -51.93 -0.40 0.55 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -28.60 391.43 -8.32 -36.93 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.76 Total: 3.44 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -0.38 Total: 4.16 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.24 Total: -44.15 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.18 Total: -21.04 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.60 -8.32 -36.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597143603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.532 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds