Wall clock time and date at job start Fri Apr 10 2020 22:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.46960 * 2 1 4 4 C 1.53001 * 109.46854 * 120.00205 * 2 1 3 5 5 C 1.53003 * 109.47415 * 65.00148 * 4 2 1 6 6 N 1.46499 * 109.47264 * 179.97438 * 5 4 2 7 7 C 1.46499 * 119.99660 * 270.00100 * 6 5 4 8 8 C 1.50706 * 109.46915 * 269.99374 * 7 6 5 9 9 H 1.08001 * 120.00000 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99874 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00235 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99814 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47379 * 60.00071 * 12 10 8 14 14 H 1.48503 * 109.46990 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47021 * 299.99658 * 12 10 8 16 16 C 1.34773 * 120.00084 * 89.99407 * 6 5 4 17 17 O 1.21283 * 119.99969 * 0.02562 * 16 6 5 18 18 C 1.50701 * 120.00037 * 180.02562 * 16 6 5 19 19 C 1.53003 * 109.47377 * 174.49256 * 18 16 6 20 20 H 1.09001 * 110.28165 * 52.54554 * 19 18 16 21 21 C 1.54482 * 110.24344 * 290.57676 * 19 18 16 22 22 C 1.54629 * 101.76482 * 215.58123 * 21 19 18 23 23 C 1.51289 * 104.19176 * 24.79381 * 22 21 19 24 24 O 1.21286 * 124.93875 * 163.78118 * 23 22 21 25 25 N 1.34417 * 110.11772 * 343.75015 * 23 22 21 26 26 C 1.46499 * 124.34773 * 179.56700 * 25 23 22 27 27 H 1.08997 * 109.47462 * 299.99990 * 1 2 3 28 28 H 1.09004 * 109.47207 * 60.00370 * 1 2 3 29 29 H 1.09005 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46761 * 239.99820 * 2 1 3 31 31 H 1.09006 * 109.46980 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47509 * 299.99561 * 3 2 1 33 33 H 1.09000 * 109.47530 * 60.00292 * 3 2 1 34 34 H 1.08990 * 109.47157 * 304.99647 * 4 2 1 35 35 H 1.08998 * 109.46896 * 185.00000 * 4 2 1 36 36 H 1.09001 * 109.46966 * 59.99359 * 5 4 2 37 37 H 1.09003 * 109.46501 * 299.99774 * 5 4 2 38 38 H 1.08997 * 109.47621 * 29.99644 * 7 6 5 39 39 H 1.09007 * 109.46856 * 150.00188 * 7 6 5 40 40 H 0.97007 * 120.00096 * 180.02562 * 11 10 8 41 41 H 1.08998 * 109.47133 * 54.49595 * 18 16 6 42 42 H 1.09005 * 109.47106 * 294.49190 * 18 16 6 43 43 H 1.08996 * 110.97221 * 97.46377 * 21 19 18 44 44 H 1.09005 * 110.96950 * 333.69789 * 21 19 18 45 45 H 1.08997 * 110.48783 * 266.12078 * 22 21 19 46 46 H 1.08991 * 110.48840 * 143.47352 * 22 21 19 47 47 H 1.08997 * 109.47315 * 5.10636 * 26 25 23 48 48 H 1.08998 * 109.46974 * 125.10579 * 26 25 23 49 49 H 1.09003 * 109.47205 * 245.10145 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6352 -2.1956 1.1880 6 7 2.1240 -2.8863 2.3838 7 6 3.4523 -3.5043 2.3812 8 6 3.3414 -4.9314 1.9100 9 1 2.3780 -5.3374 1.6391 10 6 4.4700 -5.7188 1.8246 11 7 5.6432 -5.2244 2.1540 12 14 4.3326 -7.4876 1.2398 13 1 3.7732 -7.5123 -0.1356 14 1 5.6791 -8.1141 1.2373 15 1 3.4366 -8.2425 2.1523 16 6 1.3518 -2.9532 3.4864 17 8 0.2520 -2.4419 3.4884 18 6 1.8549 -3.6633 4.7167 19 6 0.8536 -3.4768 5.8585 20 1 -0.1461 -3.7677 5.5357 21 6 0.8548 -2.0076 6.3359 22 6 0.6268 -2.1701 7.8567 23 6 1.1383 -3.5608 8.1619 24 8 1.3992 -3.9771 9.2708 25 7 1.2608 -4.2681 7.0254 26 6 1.7398 -5.6511 6.9601 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1262 -0.6444 1.2952 36 1 2.0698 -2.6550 0.3002 37 1 0.5488 -2.2724 1.1420 38 1 4.1095 -2.9503 1.7109 39 1 3.8635 -3.4859 3.3906 40 1 6.4373 -5.7783 2.0936 41 1 2.8193 -3.2469 5.0077 42 1 1.9676 -4.7261 4.5023 43 1 0.0400 -1.4476 5.8771 44 1 1.8149 -1.5326 6.1340 45 1 -0.4343 -2.0934 8.0937 46 1 1.1972 -1.4240 8.4098 47 1 1.8885 -6.0322 7.9704 48 1 1.0029 -6.2668 6.4443 49 1 2.6842 -5.6832 6.4169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597143603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:35 Heat of formation + Delta-G solvation = -109.758986 kcal Electronic energy + Delta-G solvation = -27042.326208 eV Core-core repulsion = 23388.824254 eV Total energy + Delta-G solvation = -3653.501954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70889 -40.58147 -38.06756 -37.43023 -36.34825 -34.46883 -33.70330 -32.33898 -30.40089 -28.76132 -27.96670 -27.57452 -26.33387 -24.97084 -24.07470 -22.45815 -20.85167 -20.37996 -19.84963 -18.58789 -18.27802 -17.56667 -17.37035 -16.89394 -16.35090 -16.22595 -16.04231 -15.85664 -15.08975 -14.79865 -14.72544 -14.53487 -14.42696 -14.25560 -13.88098 -13.81905 -13.64790 -13.43605 -13.25188 -13.12755 -13.05833 -12.86322 -12.79426 -12.71474 -12.48271 -12.22258 -12.05602 -11.95477 -11.92222 -11.83368 -11.55568 -11.49424 -11.36428 -10.95533 -10.71337 -10.51145 -9.77099 -9.39629 -8.20135 -6.34834 1.42140 1.43973 1.50428 1.50833 1.79862 1.94132 2.34907 2.49521 3.10425 3.34383 3.53643 3.75888 3.83927 4.00487 4.03148 4.09828 4.12145 4.21804 4.37425 4.38003 4.43419 4.54029 4.62140 4.72984 4.75585 4.79211 4.82631 4.84326 4.85456 4.88953 4.97272 5.00386 5.07014 5.10380 5.16551 5.18155 5.19254 5.24061 5.36820 5.46451 5.51222 5.54446 5.66672 5.87750 6.06258 6.08825 6.59659 6.82987 7.09437 7.31667 7.43099 8.84656 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.007699 B = 0.005640 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3636.059373 B = 4963.749805 C = 7964.799021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.115 4.115 5 C 0.118 3.882 6 N -0.598 5.598 7 C 0.253 3.747 8 C -0.545 4.545 9 H 0.053 0.947 10 C 0.025 3.975 11 N -0.919 5.919 12 Si 0.950 3.050 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.269 1.269 16 C 0.521 3.479 17 O -0.579 6.579 18 C -0.135 4.135 19 C 0.151 3.849 20 H 0.090 0.910 21 C -0.114 4.114 22 C -0.142 4.142 23 C 0.507 3.493 24 O -0.584 6.584 25 N -0.616 5.616 26 C 0.085 3.915 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.018 0.982 39 H 0.030 0.970 40 H 0.267 0.733 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 8.663 0.964 12.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.154 4.154 5 C -0.005 4.005 6 N -0.328 5.328 7 C 0.132 3.868 8 C -0.584 4.584 9 H 0.072 0.928 10 C -0.176 4.176 11 N -0.558 5.558 12 Si 0.776 3.224 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.194 1.194 16 C 0.310 3.690 17 O -0.461 6.461 18 C -0.175 4.175 19 C 0.048 3.952 20 H 0.108 0.892 21 C -0.152 4.152 22 C -0.182 4.182 23 C 0.297 3.703 24 O -0.465 6.465 25 N -0.348 5.348 26 C -0.057 4.057 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.142 0.858 46 H 0.134 0.866 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.678 8.565 1.512 12.286 hybrid contribution 0.662 -1.446 -0.496 1.666 sum -8.016 7.118 1.016 10.769 Atomic orbital electron populations 1.21836 0.94688 1.01563 1.01940 1.21049 0.96344 0.96673 0.97056 1.21790 1.00829 0.95061 1.02206 1.21870 1.00317 0.94439 0.98773 1.21466 0.99625 0.92246 0.87136 1.48208 1.18451 1.53312 1.12819 1.19052 0.78677 0.91730 0.97307 1.21640 0.93721 0.97548 1.45449 0.92842 1.25589 0.94816 1.02079 0.95105 1.69996 0.99056 1.38243 1.48504 0.85720 0.77268 0.80301 0.79098 1.19891 1.21000 1.19412 1.20387 0.84332 0.79421 0.84871 1.90578 1.21327 1.49855 1.84367 1.21798 1.00163 1.02801 0.92735 1.21461 0.97553 0.92238 0.83989 0.89211 1.22631 1.04563 0.94145 0.93865 1.22382 1.05000 0.93330 0.97479 1.21551 0.76151 0.89401 0.83201 1.90667 1.54102 1.76713 1.25037 1.48397 1.64381 1.14074 1.07991 1.21671 1.00111 0.80636 1.03269 0.93011 0.91465 0.93367 0.91130 0.92940 0.91414 0.92718 0.92589 0.92885 0.91517 0.90765 0.96373 0.95229 0.92388 0.89015 0.88686 0.87649 0.90249 0.85759 0.86587 0.90414 0.90414 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.95 71.98 0.64 -2.45 16 2 C -0.09 -2.13 2.92 -10.80 -0.03 -2.16 16 3 C -0.14 -2.77 9.19 71.98 0.66 -2.11 16 4 C -0.12 -3.34 5.01 30.60 0.15 -3.18 16 5 C 0.12 4.01 5.16 86.38 0.45 4.46 16 6 N -0.60 -23.04 2.46 -826.13 -2.03 -25.07 16 7 C 0.25 11.37 4.99 85.63 0.43 11.79 16 8 C -0.55 -26.85 9.39 25.60 0.24 -26.61 16 9 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 10 C 0.02 1.25 5.46 84.65 0.46 1.71 16 11 N -0.92 -49.03 13.29 21.44 0.28 -48.74 16 12 Si 0.95 40.29 29.54 68.60 2.03 42.32 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 16 C 0.52 18.92 7.42 87.66 0.65 19.57 16 17 O -0.58 -21.60 14.70 -3.04 -0.04 -21.65 16 18 C -0.13 -4.36 3.66 29.85 0.11 -4.25 16 19 C 0.15 4.14 2.93 45.45 0.13 4.27 16 20 H 0.09 2.51 7.81 -2.39 -0.02 2.49 16 21 C -0.11 -2.61 5.92 31.65 0.19 -2.42 16 22 C -0.14 -2.99 6.86 30.59 0.21 -2.78 16 23 C 0.51 15.02 8.02 87.90 0.71 15.73 16 24 O -0.58 -21.59 17.36 -3.05 -0.05 -21.64 16 25 N -0.62 -17.49 3.18 -818.90 -2.61 -20.10 16 26 C 0.08 2.28 10.20 127.77 1.30 3.58 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.14 6.57 -2.38 -0.02 1.12 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 37 H 0.07 2.52 5.85 -2.39 -0.01 2.51 16 38 H 0.02 0.88 8.07 -2.39 -0.02 0.86 16 39 H 0.03 1.38 6.29 -2.38 -0.01 1.36 16 40 H 0.27 13.65 8.31 -92.70 -0.77 12.88 16 41 H 0.09 3.03 6.95 -2.39 -0.02 3.02 16 42 H 0.09 3.33 7.30 -2.38 -0.02 3.31 16 43 H 0.11 2.30 7.85 -2.39 -0.02 2.29 16 44 H 0.08 1.83 7.80 -2.38 -0.02 1.81 16 45 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.08 2.11 7.55 -2.39 -0.02 2.09 16 48 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.06 1.76 7.71 -2.39 -0.02 1.74 16 Total: -1.00 -60.12 391.43 4.78 -55.34 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.90 Total: 24.40 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.30 Total: 15.14 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -4.35 Total: -93.91 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.10 Total: -43.29 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -60.12 4.78 -55.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597143603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.418 kcal (2) G-P(sol) polarization free energy of solvation -60.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds