Wall clock time and date at job start Fri Apr 10 2020 22:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34630 * 124.46621 * 2 1 4 4 O 1.21279 * 124.90856 * 359.55935 * 3 2 1 5 5 C 1.51282 * 110.14792 * 179.53782 * 3 2 1 6 6 C 1.54634 * 104.19503 * 343.76591 * 5 3 2 7 7 C 1.46756 * 124.35057 * 179.97438 * 2 1 3 8 8 H 1.08995 * 110.24811 * 316.12199 * 7 2 1 9 9 C 1.53003 * 110.24524 * 78.03588 * 7 2 1 10 10 C 1.50698 * 109.46709 * 287.31192 * 9 7 2 11 11 O 1.21282 * 120.00597 * 341.48876 * 10 9 7 12 12 N 1.34780 * 119.99649 * 161.48615 * 10 9 7 13 13 C 1.46501 * 119.99894 * 183.53621 * 12 10 9 14 14 C 1.50705 * 109.47195 * 269.99962 * 13 12 10 15 15 H 1.07998 * 119.99695 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00280 * 180.27346 * 14 13 12 17 17 N 1.31507 * 120.00017 * 179.72747 * 16 14 13 18 18 Si 1.86801 * 119.99610 * 359.72898 * 16 14 13 19 19 H 1.48496 * 109.47469 * 89.99717 * 18 16 14 20 20 H 1.48501 * 109.47116 * 209.99942 * 18 16 14 21 21 H 1.48505 * 109.47323 * 329.99617 * 18 16 14 22 22 C 1.46503 * 120.00213 * 3.53636 * 12 10 9 23 23 C 1.52999 * 109.46831 * 263.97737 * 22 12 10 24 24 C 1.52997 * 109.46878 * 63.39786 * 23 22 12 25 25 C 1.53001 * 109.46775 * 183.39108 * 23 22 12 26 26 C 1.52998 * 109.47477 * 303.39597 * 23 22 12 27 27 H 1.09001 * 109.46754 * 271.41731 * 1 2 3 28 28 H 1.09002 * 109.46878 * 31.41568 * 1 2 3 29 29 H 1.08996 * 109.46671 * 151.41875 * 1 2 3 30 30 H 1.09000 * 110.48386 * 225.09122 * 5 3 2 31 31 H 1.08994 * 110.48475 * 102.44555 * 5 3 2 32 32 H 1.08999 * 110.97027 * 266.67953 * 6 5 3 33 33 H 1.09002 * 110.99937 * 142.92652 * 6 5 3 34 34 H 1.08995 * 109.47465 * 167.31461 * 9 7 2 35 35 H 1.08999 * 109.47426 * 47.30852 * 9 7 2 36 36 H 1.08999 * 109.47594 * 149.99785 * 13 12 10 37 37 H 1.09001 * 109.47403 * 30.00206 * 13 12 10 38 38 H 0.97010 * 119.99713 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.46924 * 23.97750 * 22 12 10 40 40 H 1.08996 * 109.46754 * 143.98145 * 22 12 10 41 41 H 1.09002 * 109.47548 * 67.97181 * 24 23 22 42 42 H 1.09008 * 109.47230 * 187.96991 * 24 23 22 43 43 H 1.09003 * 109.47185 * 307.96621 * 24 23 22 44 44 H 1.09005 * 109.46825 * 60.00395 * 25 23 22 45 45 H 1.08998 * 109.46994 * 180.02562 * 25 23 22 46 46 H 1.08998 * 109.47660 * 300.00361 * 25 23 22 47 47 H 1.08995 * 109.47367 * 59.99920 * 26 23 22 48 48 H 1.09003 * 109.47111 * 180.02562 * 26 23 22 49 49 H 1.08997 * 109.46961 * 299.99901 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2270 1.1100 0.0000 4 8 1.7998 2.2450 -0.0076 5 6 3.6927 0.7359 0.0115 6 6 3.7014 -0.7506 0.4374 7 6 2.2931 -1.2116 0.0005 8 1 1.8974 -1.9386 0.7097 9 6 2.3462 -1.8173 -1.4035 10 6 1.0192 -2.4544 -1.7261 11 8 0.2457 -2.7299 -0.8335 12 7 0.6918 -2.7180 -3.0067 13 6 -0.6286 -3.2655 -3.3274 14 6 -0.5690 -4.7711 -3.2971 15 1 0.3597 -5.2701 -3.0629 16 6 -1.6985 -5.5115 -3.5745 17 7 -1.6452 -6.8254 -3.5533 18 14 -3.3046 -4.6484 -3.9805 19 1 -3.3913 -4.4277 -5.4464 20 1 -4.4449 -5.4908 -3.5384 21 1 -3.3547 -3.3403 -3.2792 22 6 1.6565 -2.4569 -4.0780 23 6 1.3749 -1.0853 -4.6947 24 6 1.5865 0.0016 -3.6389 25 6 2.3276 -0.8486 -5.8683 26 6 -0.0707 -1.0373 -5.1934 27 1 -0.3633 0.0254 1.0274 28 1 -0.3633 0.8770 -0.5357 29 1 -0.3632 -0.9024 -0.4916 30 1 4.2358 1.3433 0.7355 31 1 4.1234 0.8502 -0.9833 32 1 3.8262 -0.8466 1.5160 33 1 4.4754 -1.3047 -0.0937 34 1 3.1312 -2.5724 -1.4441 35 1 2.5587 -1.0328 -2.1298 36 1 -0.9279 -2.9337 -4.3216 37 1 -1.3550 -2.9158 -2.5938 38 1 -2.4398 -7.3463 -3.7489 39 1 2.6665 -2.4709 -3.6687 40 1 1.5645 -3.2259 -4.8450 41 1 2.6452 0.0621 -3.3867 42 1 1.2515 0.9611 -4.0330 43 1 1.0134 -0.2439 -2.7448 44 1 2.1768 -1.6230 -6.6205 45 1 2.1273 0.1287 -6.3073 46 1 3.3574 -0.8828 -5.5130 47 1 -0.7493 -1.2060 -4.3574 48 1 -0.2711 -0.0603 -5.6332 49 1 -0.2214 -1.8117 -5.9456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597160280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:38 Heat of formation + Delta-G solvation = -65.538719 kcal Electronic energy + Delta-G solvation = -28583.744452 eV Core-core repulsion = 24932.160032 eV Total energy + Delta-G solvation = -3651.584420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82557 -39.44458 -37.32340 -36.44759 -34.00434 -32.81642 -32.40964 -30.96898 -28.49824 -27.38547 -27.04650 -26.50269 -25.85426 -25.17146 -22.40054 -21.27102 -19.53658 -19.28108 -18.05465 -17.16615 -16.92588 -16.22775 -16.17332 -15.85968 -15.25044 -14.99186 -14.33301 -14.10399 -14.01871 -13.86833 -13.76976 -13.26247 -13.15756 -13.00421 -12.67281 -12.53351 -12.44064 -12.38244 -12.15833 -11.94148 -11.75864 -11.55870 -11.55155 -11.29339 -11.26098 -11.06030 -10.93738 -10.79120 -10.68374 -10.40298 -10.22877 -10.09203 -9.74845 -9.54033 -9.08556 -8.63218 -8.60547 -7.72533 -6.11864 -4.09913 2.61085 3.08570 3.22922 3.24352 3.31974 3.34863 3.70401 4.27115 4.35805 4.36277 4.62986 4.80440 4.87741 4.89767 4.99831 5.11664 5.19404 5.27337 5.31811 5.44495 5.52227 5.55940 5.59506 5.62105 5.64865 5.68967 5.71807 5.75219 5.80959 5.84575 5.98291 6.01288 6.04158 6.08484 6.14396 6.18595 6.29415 6.44006 6.51334 6.60001 6.68812 6.91456 7.23140 7.29871 7.58919 8.18665 8.21751 8.43297 8.86958 8.93337 9.48708 11.01636 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.005075 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.108832 B = 5515.494470 C = 6202.123618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.605 5.605 3 C 0.511 3.489 4 O -0.542 6.542 5 C -0.155 4.155 6 C -0.127 4.127 7 C 0.142 3.858 8 H 0.102 0.898 9 C -0.177 4.177 10 C 0.511 3.489 11 O -0.538 6.538 12 N -0.585 5.585 13 C 0.209 3.791 14 C -0.526 4.526 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.871 3.129 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.264 1.264 22 C 0.120 3.880 23 C -0.087 4.087 24 C -0.146 4.146 25 C -0.137 4.137 26 C -0.147 4.147 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.047 0.953 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.261 13.145 0.903 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.338 5.338 3 C 0.299 3.701 4 O -0.419 6.419 5 C -0.196 4.196 6 C -0.165 4.165 7 C 0.038 3.962 8 H 0.120 0.880 9 C -0.218 4.218 10 C 0.298 3.702 11 O -0.417 6.417 12 N -0.315 5.315 13 C 0.089 3.911 14 C -0.564 4.564 15 H 0.092 0.908 16 C -0.129 4.129 17 N -0.536 5.536 18 Si 0.698 3.302 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.189 1.189 22 C -0.005 4.005 23 C -0.089 4.089 24 C -0.203 4.203 25 C -0.195 4.195 26 C -0.204 4.204 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.066 0.934 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.381 13.405 1.334 17.635 hybrid contribution -0.907 0.078 -0.390 0.990 sum 10.475 13.483 0.943 17.099 Atomic orbital electron populations 1.21936 0.77553 1.04559 1.02093 1.48220 1.06773 1.06555 1.72241 1.20982 0.89286 0.84422 0.75397 1.90698 1.78944 1.21169 1.51136 1.22337 0.94960 0.97746 1.04512 1.22671 0.96211 0.94991 1.02613 1.21491 0.90540 0.87474 0.96699 0.87998 1.22662 0.97850 1.02429 0.98859 1.20198 0.88182 0.78868 0.82945 1.90615 1.52447 1.53084 1.45577 1.47865 1.16849 1.61637 1.05106 1.19866 0.79930 0.94986 0.96305 1.21317 0.98276 0.89069 1.47778 0.90844 1.24835 0.98517 0.94681 0.94886 1.69891 1.29567 1.04835 1.49315 0.86928 0.84021 0.80357 0.78938 1.20090 1.20958 1.18884 1.21575 0.92059 0.95653 0.91196 1.21004 0.96528 0.95791 0.95543 1.22124 1.00642 0.98214 0.99294 1.21808 0.98528 1.01651 0.97535 1.22077 0.95617 1.01009 1.01686 0.92993 0.91719 0.87988 0.88249 0.87990 0.89671 0.88892 0.87946 0.87579 0.94604 0.94522 0.92593 0.91218 0.89753 0.92823 0.92846 0.91860 0.92305 0.92698 0.92767 0.91416 0.93384 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.68 59.85 0.64 1.84 16 2 N -0.60 -8.25 2.97 -172.64 -0.51 -8.76 16 3 C 0.51 7.02 8.03 -10.77 -0.09 6.93 16 4 O -0.54 -9.52 17.62 5.56 0.10 -9.42 16 5 C -0.16 -1.39 6.86 -26.74 -0.18 -1.58 16 6 C -0.13 -1.01 6.70 -25.09 -0.17 -1.17 16 7 C 0.14 1.68 2.83 -67.01 -0.19 1.49 16 8 H 0.10 1.36 7.53 -51.93 -0.39 0.97 16 9 C -0.18 -2.21 3.41 -27.88 -0.09 -2.30 16 10 C 0.51 9.15 5.51 -10.98 -0.06 9.09 16 11 O -0.54 -11.65 12.87 5.56 0.07 -11.58 16 12 N -0.58 -10.85 1.99 -175.06 -0.35 -11.20 16 13 C 0.21 4.78 3.00 -5.19 -0.02 4.76 16 14 C -0.53 -14.48 9.94 -34.44 -0.34 -14.82 16 15 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 18 Si 0.87 21.05 27.46 -169.99 -4.67 16.38 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.26 -6.21 6.55 56.52 0.37 -5.84 16 22 C 0.12 1.74 4.55 -4.04 -0.02 1.72 16 23 C -0.09 -1.09 0.85 -154.51 -0.13 -1.22 16 24 C -0.15 -1.77 6.87 37.16 0.26 -1.51 16 25 C -0.14 -1.38 8.47 37.16 0.31 -1.07 16 26 C -0.15 -2.07 7.02 37.16 0.26 -1.81 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.97 7.96 -51.93 -0.41 0.56 16 29 H 0.10 1.76 4.57 -51.93 -0.24 1.52 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.54 7.80 -51.93 -0.40 0.14 16 34 H 0.10 1.08 7.97 -51.93 -0.41 0.66 16 35 H 0.11 1.19 3.38 -51.93 -0.18 1.01 16 36 H 0.04 0.78 4.72 -51.93 -0.25 0.53 16 37 H 0.04 0.92 6.54 -51.93 -0.34 0.58 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.07 0.84 6.54 -51.93 -0.34 0.50 16 40 H 0.08 1.33 8.12 -51.93 -0.42 0.90 16 41 H 0.05 0.55 6.80 -51.93 -0.35 0.20 16 42 H 0.05 0.64 8.13 -51.92 -0.42 0.22 16 43 H 0.06 0.90 5.57 -51.93 -0.29 0.61 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 1.11 5.66 -51.93 -0.29 0.82 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.86 7.86 -51.93 -0.41 0.45 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -34.04 368.46 -7.07 -41.11 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.12 Total: 1.97 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 0.08 Total: 2.31 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.09 Total: -46.33 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.17 Total: -21.00 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.04 -7.07 -41.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597160280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.425 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds