Wall clock time and date at job start Fri Apr 10 2020 22:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34630 * 124.46621 * 2 1 4 4 O 1.21279 * 124.90856 * 359.55935 * 3 2 1 5 5 C 1.51282 * 110.14792 * 179.53782 * 3 2 1 6 6 C 1.54634 * 104.19503 * 343.76591 * 5 3 2 7 7 C 1.46756 * 124.35057 * 179.97438 * 2 1 3 8 8 H 1.08995 * 110.24811 * 316.12199 * 7 2 1 9 9 C 1.53003 * 110.24524 * 78.03588 * 7 2 1 10 10 C 1.50698 * 109.46709 * 287.31192 * 9 7 2 11 11 O 1.21282 * 120.00597 * 341.48876 * 10 9 7 12 12 N 1.34780 * 119.99649 * 161.48615 * 10 9 7 13 13 C 1.46501 * 119.99894 * 183.53621 * 12 10 9 14 14 C 1.50705 * 109.47195 * 269.99962 * 13 12 10 15 15 H 1.07998 * 119.99695 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00280 * 180.27346 * 14 13 12 17 17 N 1.31507 * 120.00017 * 179.72747 * 16 14 13 18 18 Si 1.86801 * 119.99610 * 359.72898 * 16 14 13 19 19 H 1.48496 * 109.47469 * 89.99717 * 18 16 14 20 20 H 1.48501 * 109.47116 * 209.99942 * 18 16 14 21 21 H 1.48505 * 109.47323 * 329.99617 * 18 16 14 22 22 C 1.46503 * 120.00213 * 3.53636 * 12 10 9 23 23 C 1.52999 * 109.46831 * 263.97737 * 22 12 10 24 24 C 1.52997 * 109.46878 * 63.39786 * 23 22 12 25 25 C 1.53001 * 109.46775 * 183.39108 * 23 22 12 26 26 C 1.52998 * 109.47477 * 303.39597 * 23 22 12 27 27 H 1.09001 * 109.46754 * 271.41731 * 1 2 3 28 28 H 1.09002 * 109.46878 * 31.41568 * 1 2 3 29 29 H 1.08996 * 109.46671 * 151.41875 * 1 2 3 30 30 H 1.09000 * 110.48386 * 225.09122 * 5 3 2 31 31 H 1.08994 * 110.48475 * 102.44555 * 5 3 2 32 32 H 1.08999 * 110.97027 * 266.67953 * 6 5 3 33 33 H 1.09002 * 110.99937 * 142.92652 * 6 5 3 34 34 H 1.08995 * 109.47465 * 167.31461 * 9 7 2 35 35 H 1.08999 * 109.47426 * 47.30852 * 9 7 2 36 36 H 1.08999 * 109.47594 * 149.99785 * 13 12 10 37 37 H 1.09001 * 109.47403 * 30.00206 * 13 12 10 38 38 H 0.97010 * 119.99713 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.46924 * 23.97750 * 22 12 10 40 40 H 1.08996 * 109.46754 * 143.98145 * 22 12 10 41 41 H 1.09002 * 109.47548 * 67.97181 * 24 23 22 42 42 H 1.09008 * 109.47230 * 187.96991 * 24 23 22 43 43 H 1.09003 * 109.47185 * 307.96621 * 24 23 22 44 44 H 1.09005 * 109.46825 * 60.00395 * 25 23 22 45 45 H 1.08998 * 109.46994 * 180.02562 * 25 23 22 46 46 H 1.08998 * 109.47660 * 300.00361 * 25 23 22 47 47 H 1.08995 * 109.47367 * 59.99920 * 26 23 22 48 48 H 1.09003 * 109.47111 * 180.02562 * 26 23 22 49 49 H 1.08997 * 109.46961 * 299.99901 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2270 1.1100 0.0000 4 8 1.7998 2.2450 -0.0076 5 6 3.6927 0.7359 0.0115 6 6 3.7014 -0.7506 0.4374 7 6 2.2931 -1.2116 0.0005 8 1 1.8974 -1.9386 0.7097 9 6 2.3462 -1.8173 -1.4035 10 6 1.0192 -2.4544 -1.7261 11 8 0.2457 -2.7299 -0.8335 12 7 0.6918 -2.7180 -3.0067 13 6 -0.6286 -3.2655 -3.3274 14 6 -0.5690 -4.7711 -3.2971 15 1 0.3597 -5.2701 -3.0629 16 6 -1.6985 -5.5115 -3.5745 17 7 -1.6452 -6.8254 -3.5533 18 14 -3.3046 -4.6484 -3.9805 19 1 -3.3913 -4.4277 -5.4464 20 1 -4.4449 -5.4908 -3.5384 21 1 -3.3547 -3.3403 -3.2792 22 6 1.6565 -2.4569 -4.0780 23 6 1.3749 -1.0853 -4.6947 24 6 1.5865 0.0016 -3.6389 25 6 2.3276 -0.8486 -5.8683 26 6 -0.0707 -1.0373 -5.1934 27 1 -0.3633 0.0254 1.0274 28 1 -0.3633 0.8770 -0.5357 29 1 -0.3632 -0.9024 -0.4916 30 1 4.2358 1.3433 0.7355 31 1 4.1234 0.8502 -0.9833 32 1 3.8262 -0.8466 1.5160 33 1 4.4754 -1.3047 -0.0937 34 1 3.1312 -2.5724 -1.4441 35 1 2.5587 -1.0328 -2.1298 36 1 -0.9279 -2.9337 -4.3216 37 1 -1.3550 -2.9158 -2.5938 38 1 -2.4398 -7.3463 -3.7489 39 1 2.6665 -2.4709 -3.6687 40 1 1.5645 -3.2259 -4.8450 41 1 2.6452 0.0621 -3.3867 42 1 1.2515 0.9611 -4.0330 43 1 1.0134 -0.2439 -2.7448 44 1 2.1768 -1.6230 -6.6205 45 1 2.1273 0.1287 -6.3073 46 1 3.3574 -0.8828 -5.5130 47 1 -0.7493 -1.2060 -4.3574 48 1 -0.2711 -0.0603 -5.6332 49 1 -0.2214 -1.8117 -5.9456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597160280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:37 Heat of formation + Delta-G solvation = -87.969035 kcal Electronic energy + Delta-G solvation = -28584.717104 eV Core-core repulsion = 24932.160032 eV Total energy + Delta-G solvation = -3652.557071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.92851 -40.68489 -38.53908 -37.59159 -35.62161 -34.36717 -33.73122 -32.19061 -30.10121 -28.36923 -28.13153 -27.57967 -27.01251 -26.35949 -24.09027 -22.22798 -20.79069 -20.31224 -19.26992 -19.14355 -18.16539 -17.44886 -17.36494 -17.08018 -16.70053 -16.18936 -15.82208 -15.29888 -15.14690 -15.02690 -14.79940 -14.62946 -14.44045 -14.19880 -14.00843 -13.86003 -13.64096 -13.50657 -13.27402 -13.09747 -13.03794 -12.80941 -12.74334 -12.54050 -12.41841 -12.23786 -12.10229 -12.06002 -11.84037 -11.74105 -11.69131 -11.48806 -11.34032 -10.81692 -10.80140 -10.55455 -9.73905 -9.27982 -8.33825 -6.36301 1.27857 1.32316 1.41746 1.59006 1.84237 2.09471 2.28718 2.34701 3.00924 3.40166 3.52724 3.78765 3.84730 3.86057 3.91023 4.10516 4.17017 4.33940 4.38849 4.43358 4.48489 4.57599 4.58069 4.62309 4.72879 4.74744 4.81878 4.86204 4.90027 4.91619 4.94003 4.96257 5.00341 5.09782 5.11465 5.13874 5.18870 5.22328 5.36491 5.42759 5.46754 5.53636 5.55556 5.70973 6.23840 6.26411 6.64889 6.77585 7.16912 7.24077 7.48634 8.83154 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.005075 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.108832 B = 5515.494470 C = 6202.123618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.609 5.609 3 C 0.502 3.498 4 O -0.588 6.588 5 C -0.144 4.144 6 C -0.111 4.111 7 C 0.137 3.863 8 H 0.081 0.919 9 C -0.164 4.164 10 C 0.500 3.500 11 O -0.586 6.586 12 N -0.592 5.592 13 C 0.224 3.776 14 C -0.527 4.527 15 H 0.032 0.968 16 C 0.015 3.985 17 N -0.945 5.945 18 Si 0.936 3.064 19 H -0.253 1.253 20 H -0.283 1.283 21 H -0.259 1.259 22 C 0.114 3.886 23 C -0.080 4.080 24 C -0.142 4.142 25 C -0.132 4.132 26 C -0.149 4.149 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.052 0.948 37 H 0.011 0.989 38 H 0.267 0.733 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.037 0.963 48 H 0.064 0.936 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.136 15.126 0.044 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.341 5.341 3 C 0.292 3.708 4 O -0.470 6.470 5 C -0.183 4.183 6 C -0.148 4.148 7 C 0.033 3.967 8 H 0.099 0.901 9 C -0.204 4.204 10 C 0.290 3.710 11 O -0.468 6.468 12 N -0.321 5.321 13 C 0.102 3.898 14 C -0.566 4.566 15 H 0.050 0.950 16 C -0.183 4.183 17 N -0.585 5.585 18 Si 0.759 3.241 19 H -0.178 1.178 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.009 4.009 23 C -0.081 4.081 24 C -0.199 4.199 25 C -0.189 4.189 26 C -0.207 4.207 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.312 15.388 0.453 21.020 hybrid contribution -1.795 -0.589 -0.082 1.891 sum 12.517 14.799 0.371 19.386 Atomic orbital electron populations 1.21694 0.79450 1.02896 1.01633 1.48365 1.06067 1.07745 1.71893 1.21908 0.91413 0.83458 0.74011 1.90671 1.80201 1.22923 1.53167 1.22411 0.90943 0.98339 1.06640 1.22733 0.93852 0.94288 1.03933 1.21651 0.92752 0.86417 0.95872 0.90133 1.22702 0.94753 1.03232 0.99699 1.21252 0.89772 0.78021 0.81943 1.90595 1.54352 1.54938 1.46870 1.47912 1.16017 1.61448 1.06766 1.19430 0.82351 0.91871 0.96168 1.21587 0.96631 0.91620 1.46745 0.95009 1.25725 1.02419 0.95284 0.94906 1.70039 1.30788 1.06575 1.51117 0.85883 0.79092 0.79182 0.79902 1.17753 1.20871 1.18289 1.21859 0.92635 0.96460 0.89948 1.20952 0.96033 0.94541 0.96609 1.22090 1.01960 0.97899 0.97983 1.21768 0.98889 1.02104 0.96186 1.22077 0.96490 1.01678 1.00408 0.92974 0.92418 0.90347 0.86440 0.85402 0.88439 0.85322 0.84864 0.85664 0.93077 0.97086 0.92436 0.87825 0.91378 0.90049 0.92605 0.94336 0.92567 0.91690 0.90491 0.94385 0.91709 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.70 10.68 127.77 1.36 4.06 16 2 N -0.61 -16.10 2.97 -818.58 -2.43 -18.54 16 3 C 0.50 12.81 8.03 87.86 0.71 13.51 16 4 O -0.59 -20.27 17.62 -3.03 -0.05 -20.32 16 5 C -0.14 -1.91 6.86 30.59 0.21 -1.70 16 6 C -0.11 -1.22 6.70 31.66 0.21 -1.01 16 7 C 0.14 2.94 2.83 45.45 0.13 3.07 16 8 H 0.08 2.11 7.53 -2.39 -0.02 2.09 16 9 C -0.16 -3.65 3.41 29.85 0.10 -3.54 16 10 C 0.50 17.98 5.51 87.66 0.48 18.47 16 11 O -0.59 -26.49 12.87 -3.04 -0.04 -26.53 16 12 N -0.59 -22.13 1.99 -826.15 -1.64 -23.77 16 13 C 0.22 10.56 3.00 85.63 0.26 10.82 16 14 C -0.53 -30.27 9.94 25.60 0.25 -30.02 16 15 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 16 C 0.01 0.85 5.47 84.66 0.46 1.32 16 17 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 18 Si 0.94 44.47 27.46 68.60 1.88 46.35 16 19 H -0.25 -11.08 7.11 99.48 0.71 -10.38 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.26 -11.95 6.55 99.48 0.65 -11.30 16 22 C 0.11 3.11 4.55 86.38 0.39 3.51 16 23 C -0.08 -1.81 0.85 -52.18 -0.04 -1.86 16 24 C -0.14 -3.04 6.87 71.98 0.49 -2.55 16 25 C -0.13 -2.15 8.47 71.98 0.61 -1.54 16 26 C -0.15 -4.07 7.02 71.98 0.51 -3.57 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.84 7.96 -2.39 -0.02 1.82 16 29 H 0.08 2.89 4.57 -2.39 -0.01 2.88 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.13 0.61 7.80 -2.39 -0.02 0.60 16 34 H 0.13 2.20 7.97 -2.39 -0.02 2.18 16 35 H 0.13 2.30 3.38 -2.39 -0.01 2.29 16 36 H 0.05 2.26 4.72 -2.39 -0.01 2.24 16 37 H 0.01 0.58 6.54 -2.39 -0.02 0.56 16 38 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 39 H 0.10 2.11 6.54 -2.39 -0.02 2.09 16 40 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 41 H 0.08 1.27 6.80 -2.39 -0.02 1.25 16 42 H 0.05 1.18 8.13 -2.38 -0.02 1.16 16 43 H 0.04 1.03 5.57 -2.39 -0.01 1.02 16 44 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.04 1.25 5.66 -2.39 -0.01 1.23 16 48 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.05 1.47 7.86 -2.39 -0.02 1.45 16 Total: -1.00 -81.20 368.46 5.03 -76.17 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.88 Total: 16.55 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 6.14 Total: 8.97 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -3.78 Total: -101.19 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.09 Total: -46.86 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -81.20 5.03 -76.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597160280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.795 kcal (2) G-P(sol) polarization free energy of solvation -81.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds