Wall clock time and date at job start Fri Apr 10 2020 22:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46512 * 1 3 3 C 1.34415 * 124.34627 * 2 1 4 4 O 1.21285 * 124.94551 * 0.37719 * 3 2 1 5 5 C 1.51276 * 110.11556 * 180.40628 * 3 2 1 6 6 C 1.54634 * 104.19580 * 16.25177 * 5 3 2 7 7 C 1.46760 * 124.35187 * 179.69488 * 2 1 3 8 8 H 1.09000 * 110.24340 * 43.98014 * 7 2 1 9 9 C 1.52995 * 110.24638 * 281.98847 * 7 2 1 10 10 C 1.50697 * 109.47712 * 69.32315 * 9 7 2 11 11 O 1.21284 * 119.99910 * 8.79973 * 10 9 7 12 12 N 1.34772 * 120.00616 * 188.79838 * 10 9 7 13 13 C 1.46506 * 120.00459 * 179.39157 * 12 10 9 14 14 C 1.50694 * 109.46712 * 90.00444 * 13 12 10 15 15 H 1.07999 * 120.00252 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00128 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00085 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99482 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47342 * 90.00170 * 18 16 14 20 20 H 1.48499 * 109.47129 * 209.99628 * 18 16 14 21 21 H 1.48500 * 109.47500 * 330.00000 * 18 16 14 22 22 C 1.46496 * 120.00044 * 359.40248 * 12 10 9 23 23 C 1.52999 * 109.47845 * 96.97499 * 22 12 10 24 24 C 1.52999 * 109.47103 * 62.37498 * 23 22 12 25 25 C 1.52996 * 109.47461 * 182.37691 * 23 22 12 26 26 C 1.52998 * 109.46873 * 302.37828 * 23 22 12 27 27 H 1.08999 * 109.47048 * 3.39692 * 1 2 3 28 28 H 1.08995 * 109.46879 * 243.39599 * 1 2 3 29 29 H 1.08996 * 109.46543 * 123.39759 * 1 2 3 30 30 H 1.09004 * 110.49199 * 134.92687 * 5 3 2 31 31 H 1.08997 * 110.48816 * 257.56865 * 5 3 2 32 32 H 1.08994 * 110.97286 * 93.32365 * 6 5 3 33 33 H 1.08999 * 110.96848 * 217.04869 * 6 5 3 34 34 H 1.09000 * 109.47667 * 189.32649 * 9 7 2 35 35 H 1.09004 * 109.47411 * 309.32432 * 9 7 2 36 36 H 1.08997 * 109.46992 * 210.00640 * 13 12 10 37 37 H 1.09004 * 109.46905 * 330.00760 * 13 12 10 38 38 H 0.96999 * 119.99955 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47513 * 216.97812 * 22 12 10 40 40 H 1.09007 * 109.47032 * 336.97418 * 22 12 10 41 41 H 1.09005 * 109.46973 * 60.00143 * 24 23 22 42 42 H 1.08995 * 109.47092 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47252 * 300.00717 * 24 23 22 44 44 H 1.09008 * 109.47411 * 59.99990 * 25 23 22 45 45 H 1.09003 * 109.47133 * 179.97438 * 25 23 22 46 46 H 1.08999 * 109.47621 * 300.00304 * 25 23 22 47 47 H 1.09000 * 109.47506 * 48.85318 * 26 23 22 48 48 H 1.09000 * 109.46994 * 168.85025 * 26 23 22 49 49 H 1.09001 * 109.47562 * 288.84931 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2443 0.0065 5 6 3.6898 0.7379 -0.0101 6 6 3.7011 -0.7487 -0.4356 7 6 2.2932 -1.2116 0.0065 8 1 1.8985 -1.9420 -0.6998 9 6 2.3458 -1.8095 1.4138 10 6 0.9943 -2.3719 1.7716 11 8 0.1261 -2.4469 0.9281 12 7 0.7503 -2.7915 3.0289 13 6 -0.5678 -3.3258 3.3801 14 6 -0.5838 -4.8149 3.1493 15 1 0.2996 -5.3135 2.7786 16 6 -1.7263 -5.5409 3.4115 17 7 -1.7401 -6.8406 3.2106 18 14 -3.2545 -4.6785 4.0520 19 1 -4.0933 -4.2421 2.9068 20 1 -4.0301 -5.6142 4.9052 21 1 -2.8552 -3.4935 4.8530 22 6 1.8031 -2.7130 4.0446 23 6 1.6210 -1.4382 4.8707 24 6 0.2784 -1.4921 5.6024 25 6 2.7544 -1.3262 5.8924 26 6 1.6481 -0.2215 3.9436 27 1 -0.3633 1.0259 -0.0609 28 1 -0.3633 -0.4602 0.9188 29 1 -0.3632 -0.5657 -0.8580 30 1 4.2327 1.3460 -0.7338 31 1 4.1194 0.8532 0.9850 32 1 3.8270 -0.8448 -1.5140 33 1 4.4759 -1.3008 0.0963 34 1 3.0899 -2.6055 1.4429 35 1 2.6169 -1.0326 2.1287 36 1 -0.7760 -3.1185 4.4297 37 1 -1.3287 -2.8536 2.7585 38 1 -2.5440 -7.3512 3.3946 39 1 1.7417 -3.5822 4.6995 40 1 2.7778 -2.6938 3.5569 41 1 0.2591 -2.3590 6.2629 42 1 0.1489 -0.5841 6.1913 43 1 -0.5291 -1.5719 4.8745 44 1 3.7110 -1.2878 5.3711 45 1 2.6249 -0.4178 6.4806 46 1 2.7352 -2.1931 6.5529 47 1 0.9772 -0.3913 3.1014 48 1 1.3240 0.6619 4.4938 49 1 2.6623 -0.0680 3.5749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597160281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:40 Heat of formation + Delta-G solvation = -68.059563 kcal Electronic energy + Delta-G solvation = -28479.363127 eV Core-core repulsion = 24827.669395 eV Total energy + Delta-G solvation = -3651.693732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78434 -39.43310 -37.30429 -36.39895 -33.98736 -32.79254 -32.39486 -30.92357 -28.49272 -27.33262 -27.03767 -26.47185 -25.82015 -25.20476 -22.39431 -21.24890 -19.51866 -19.23127 -18.06155 -17.15371 -16.88385 -16.21511 -16.19805 -15.84284 -15.24240 -14.99612 -14.30664 -14.07440 -14.01285 -13.86715 -13.72855 -13.22363 -13.06599 -12.99093 -12.60877 -12.54846 -12.39985 -12.30906 -12.15574 -12.02402 -11.71898 -11.52999 -11.51348 -11.30632 -11.25151 -11.07512 -10.93855 -10.78594 -10.61765 -10.44869 -10.28559 -10.06485 -9.75286 -9.53882 -9.05415 -8.61060 -8.57633 -7.69195 -6.11890 -4.09870 2.63363 3.13248 3.25416 3.28799 3.31240 3.33707 3.71529 4.28953 4.35690 4.36496 4.63364 4.82000 4.88724 4.91022 4.99935 5.12589 5.19844 5.29088 5.31727 5.45178 5.52347 5.57025 5.60067 5.63299 5.66051 5.70895 5.73603 5.81257 5.83837 5.87041 5.99629 6.01583 6.04788 6.10002 6.17569 6.23780 6.30331 6.45843 6.51286 6.62942 6.75233 6.90274 7.27893 7.30916 7.59415 8.20779 8.24447 8.43707 8.88358 8.94089 9.48827 11.01603 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.005101 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.999981 B = 5487.906846 C = 6292.849051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.603 5.603 3 C 0.511 3.489 4 O -0.544 6.544 5 C -0.156 4.156 6 C -0.128 4.128 7 C 0.145 3.855 8 H 0.099 0.901 9 C -0.169 4.169 10 C 0.509 3.491 11 O -0.537 6.537 12 N -0.586 5.586 13 C 0.208 3.792 14 C -0.526 4.526 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.873 3.127 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.266 1.266 22 C 0.120 3.880 23 C -0.087 4.087 24 C -0.149 4.149 25 C -0.137 4.137 26 C -0.143 4.143 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.079 12.269 -0.066 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.336 5.336 3 C 0.299 3.701 4 O -0.423 6.423 5 C -0.196 4.196 6 C -0.165 4.165 7 C 0.040 3.960 8 H 0.117 0.883 9 C -0.210 4.210 10 C 0.297 3.703 11 O -0.416 6.416 12 N -0.316 5.316 13 C 0.088 3.912 14 C -0.564 4.564 15 H 0.091 0.909 16 C -0.129 4.129 17 N -0.536 5.536 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.004 4.004 23 C -0.088 4.088 24 C -0.206 4.206 25 C -0.195 4.195 26 C -0.200 4.200 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.141 12.631 -0.490 17.527 hybrid contribution -0.876 0.019 0.490 1.004 sum 11.266 12.650 0.001 16.939 Atomic orbital electron populations 1.21707 0.77211 1.01616 1.03683 1.48157 1.07014 1.06491 1.71925 1.20909 0.89329 0.84447 0.75458 1.90699 1.78842 1.21219 1.51493 1.22341 0.95025 0.97724 1.04478 1.22702 0.96262 0.95009 1.02576 1.21477 0.90355 0.87556 0.96577 0.88285 1.22498 0.97698 1.02390 0.98371 1.20155 0.89203 0.78439 0.82548 1.90661 1.47306 1.55826 1.47760 1.47840 1.14458 1.60748 1.08566 1.19877 0.80005 0.95062 0.96257 1.21319 1.00208 0.90395 1.44518 0.90863 1.24837 0.98326 0.94689 0.95075 1.69891 1.28865 1.06032 1.48851 0.86907 0.83873 0.79771 0.79475 1.19974 1.21105 1.19052 1.21563 0.90533 0.97234 0.91109 1.20991 0.96285 0.95840 0.95709 1.22110 0.96956 1.01126 1.00383 1.21809 0.97338 1.01814 0.98531 1.22045 1.00987 0.97214 0.99789 0.91452 0.90705 0.91715 0.88274 0.88032 0.89647 0.88947 0.88041 0.88163 0.94045 0.94933 0.92596 0.89866 0.91217 0.92300 0.93417 0.91180 0.92791 0.92714 0.92356 0.92150 0.92888 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.53 9.52 59.85 0.57 2.10 16 2 N -0.60 -8.41 2.96 -172.60 -0.51 -8.92 16 3 C 0.51 7.14 8.02 -10.87 -0.09 7.05 16 4 O -0.54 -9.70 17.35 5.55 0.10 -9.60 16 5 C -0.16 -1.41 6.85 -26.74 -0.18 -1.60 16 6 C -0.13 -1.01 6.72 -25.00 -0.17 -1.18 16 7 C 0.14 1.72 2.82 -66.92 -0.19 1.53 16 8 H 0.10 1.31 7.77 -51.93 -0.40 0.91 16 9 C -0.17 -2.10 3.50 -27.89 -0.10 -2.20 16 10 C 0.51 9.12 5.38 -10.99 -0.06 9.06 16 11 O -0.54 -11.51 12.25 5.55 0.07 -11.44 16 12 N -0.59 -10.88 1.95 -175.06 -0.34 -11.22 16 13 C 0.21 4.77 3.24 -5.19 -0.02 4.75 16 14 C -0.53 -14.47 9.94 -34.44 -0.34 -14.81 16 15 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 18 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 22 C 0.12 1.74 4.53 -4.04 -0.02 1.72 16 23 C -0.09 -1.09 0.85 -154.51 -0.13 -1.22 16 24 C -0.15 -2.11 7.18 37.16 0.27 -1.84 16 25 C -0.14 -1.36 8.45 37.16 0.31 -1.05 16 26 C -0.14 -1.77 7.00 37.16 0.26 -1.51 16 27 H 0.07 1.02 7.54 -51.93 -0.39 0.63 16 28 H 0.07 1.30 5.80 -51.93 -0.30 1.00 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.54 7.86 -51.93 -0.41 0.13 16 34 H 0.10 1.06 7.79 -51.93 -0.40 0.66 16 35 H 0.10 1.13 4.22 -51.93 -0.22 0.91 16 36 H 0.04 0.91 4.25 -51.93 -0.22 0.69 16 37 H 0.03 0.81 6.86 -51.93 -0.36 0.45 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 40 H 0.07 0.83 6.37 -51.93 -0.33 0.50 16 41 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.17 5.41 -51.93 -0.28 0.89 16 44 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.89 5.58 -51.93 -0.29 0.60 16 48 H 0.05 0.64 8.10 -51.93 -0.42 0.21 16 49 H 0.05 0.55 6.72 -51.93 -0.35 0.20 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -34.00 368.18 -7.20 -41.20 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.19 Total: 1.58 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 0.02 Total: 2.77 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.08 Total: -46.51 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.16 Total: -21.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.00 -7.20 -41.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597160281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.861 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds