Wall clock time and date at job start Fri Apr 10 2020 22:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46512 * 1 3 3 C 1.34415 * 124.34627 * 2 1 4 4 O 1.21285 * 124.94551 * 0.37719 * 3 2 1 5 5 C 1.51276 * 110.11556 * 180.40628 * 3 2 1 6 6 C 1.54634 * 104.19580 * 16.25177 * 5 3 2 7 7 C 1.46760 * 124.35187 * 179.69488 * 2 1 3 8 8 H 1.09000 * 110.24340 * 43.98014 * 7 2 1 9 9 C 1.52995 * 110.24638 * 281.98847 * 7 2 1 10 10 C 1.50697 * 109.47712 * 69.32315 * 9 7 2 11 11 O 1.21284 * 119.99910 * 8.79973 * 10 9 7 12 12 N 1.34772 * 120.00616 * 188.79838 * 10 9 7 13 13 C 1.46506 * 120.00459 * 179.39157 * 12 10 9 14 14 C 1.50694 * 109.46712 * 90.00444 * 13 12 10 15 15 H 1.07999 * 120.00252 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00128 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00085 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99482 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47342 * 90.00170 * 18 16 14 20 20 H 1.48499 * 109.47129 * 209.99628 * 18 16 14 21 21 H 1.48500 * 109.47500 * 330.00000 * 18 16 14 22 22 C 1.46496 * 120.00044 * 359.40248 * 12 10 9 23 23 C 1.52999 * 109.47845 * 96.97499 * 22 12 10 24 24 C 1.52999 * 109.47103 * 62.37498 * 23 22 12 25 25 C 1.52996 * 109.47461 * 182.37691 * 23 22 12 26 26 C 1.52998 * 109.46873 * 302.37828 * 23 22 12 27 27 H 1.08999 * 109.47048 * 3.39692 * 1 2 3 28 28 H 1.08995 * 109.46879 * 243.39599 * 1 2 3 29 29 H 1.08996 * 109.46543 * 123.39759 * 1 2 3 30 30 H 1.09004 * 110.49199 * 134.92687 * 5 3 2 31 31 H 1.08997 * 110.48816 * 257.56865 * 5 3 2 32 32 H 1.08994 * 110.97286 * 93.32365 * 6 5 3 33 33 H 1.08999 * 110.96848 * 217.04869 * 6 5 3 34 34 H 1.09000 * 109.47667 * 189.32649 * 9 7 2 35 35 H 1.09004 * 109.47411 * 309.32432 * 9 7 2 36 36 H 1.08997 * 109.46992 * 210.00640 * 13 12 10 37 37 H 1.09004 * 109.46905 * 330.00760 * 13 12 10 38 38 H 0.96999 * 119.99955 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47513 * 216.97812 * 22 12 10 40 40 H 1.09007 * 109.47032 * 336.97418 * 22 12 10 41 41 H 1.09005 * 109.46973 * 60.00143 * 24 23 22 42 42 H 1.08995 * 109.47092 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47252 * 300.00717 * 24 23 22 44 44 H 1.09008 * 109.47411 * 59.99990 * 25 23 22 45 45 H 1.09003 * 109.47133 * 179.97438 * 25 23 22 46 46 H 1.08999 * 109.47621 * 300.00304 * 25 23 22 47 47 H 1.09000 * 109.47506 * 48.85318 * 26 23 22 48 48 H 1.09000 * 109.46994 * 168.85025 * 26 23 22 49 49 H 1.09001 * 109.47562 * 288.84931 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2443 0.0065 5 6 3.6898 0.7379 -0.0101 6 6 3.7011 -0.7487 -0.4356 7 6 2.2932 -1.2116 0.0065 8 1 1.8985 -1.9420 -0.6998 9 6 2.3458 -1.8095 1.4138 10 6 0.9943 -2.3719 1.7716 11 8 0.1261 -2.4469 0.9281 12 7 0.7503 -2.7915 3.0289 13 6 -0.5678 -3.3258 3.3801 14 6 -0.5838 -4.8149 3.1493 15 1 0.2996 -5.3135 2.7786 16 6 -1.7263 -5.5409 3.4115 17 7 -1.7401 -6.8406 3.2106 18 14 -3.2545 -4.6785 4.0520 19 1 -4.0933 -4.2421 2.9068 20 1 -4.0301 -5.6142 4.9052 21 1 -2.8552 -3.4935 4.8530 22 6 1.8031 -2.7130 4.0446 23 6 1.6210 -1.4382 4.8707 24 6 0.2784 -1.4921 5.6024 25 6 2.7544 -1.3262 5.8924 26 6 1.6481 -0.2215 3.9436 27 1 -0.3633 1.0259 -0.0609 28 1 -0.3633 -0.4602 0.9188 29 1 -0.3632 -0.5657 -0.8580 30 1 4.2327 1.3460 -0.7338 31 1 4.1194 0.8532 0.9850 32 1 3.8270 -0.8448 -1.5140 33 1 4.4759 -1.3008 0.0963 34 1 3.0899 -2.6055 1.4429 35 1 2.6169 -1.0326 2.1287 36 1 -0.7760 -3.1185 4.4297 37 1 -1.3287 -2.8536 2.7585 38 1 -2.5440 -7.3512 3.3946 39 1 1.7417 -3.5822 4.6995 40 1 2.7778 -2.6938 3.5569 41 1 0.2591 -2.3590 6.2629 42 1 0.1489 -0.5841 6.1913 43 1 -0.5291 -1.5719 4.8745 44 1 3.7110 -1.2878 5.3711 45 1 2.6249 -0.4178 6.4806 46 1 2.7352 -2.1931 6.5529 47 1 0.9772 -0.3913 3.1014 48 1 1.3240 0.6619 4.4938 49 1 2.6623 -0.0680 3.5749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597160281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:39 Heat of formation + Delta-G solvation = -90.448154 kcal Electronic energy + Delta-G solvation = -28480.333969 eV Core-core repulsion = 24827.669395 eV Total energy + Delta-G solvation = -3652.664574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89256 -40.68638 -38.51493 -37.55695 -35.60466 -34.37341 -33.71033 -32.15082 -30.09870 -28.31951 -28.11242 -27.57708 -26.97319 -26.40825 -24.08331 -22.21894 -20.76792 -20.28124 -19.28004 -19.14829 -18.10428 -17.48214 -17.37685 -17.05615 -16.68846 -16.21956 -15.84217 -15.28078 -15.11289 -15.01805 -14.77873 -14.63295 -14.31532 -14.19884 -14.01740 -13.84082 -13.58119 -13.46217 -13.24873 -13.12401 -13.01635 -12.80922 -12.74810 -12.53115 -12.47821 -12.24882 -12.10964 -11.99666 -11.85458 -11.72884 -11.70580 -11.47771 -11.36416 -10.83949 -10.80407 -10.51888 -9.73672 -9.24007 -8.34024 -6.36214 1.28626 1.31987 1.39545 1.58868 1.89281 2.11886 2.28258 2.36623 3.01049 3.40404 3.52833 3.78870 3.85499 3.87725 3.92516 4.11666 4.16346 4.34632 4.40326 4.44925 4.52576 4.59109 4.60549 4.61851 4.72081 4.76683 4.81682 4.88223 4.89485 4.93707 4.95793 4.96931 5.00799 5.10419 5.12764 5.14127 5.20706 5.22563 5.37546 5.43639 5.47364 5.54284 5.57250 5.72269 6.25815 6.26840 6.65012 6.80133 7.17066 7.24218 7.51259 8.82891 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.005101 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.999981 B = 5487.906846 C = 6292.849051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.608 5.608 3 C 0.500 3.500 4 O -0.592 6.592 5 C -0.143 4.143 6 C -0.110 4.110 7 C 0.138 3.862 8 H 0.079 0.921 9 C -0.156 4.156 10 C 0.498 3.502 11 O -0.583 6.583 12 N -0.593 5.593 13 C 0.222 3.778 14 C -0.526 4.526 15 H 0.032 0.968 16 C 0.015 3.985 17 N -0.945 5.945 18 Si 0.936 3.064 19 H -0.279 1.279 20 H -0.276 1.276 21 H -0.242 1.242 22 C 0.114 3.886 23 C -0.080 4.080 24 C -0.151 4.151 25 C -0.131 4.131 26 C -0.139 4.139 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.055 0.945 37 H 0.008 0.992 38 H 0.267 0.733 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.030 0.970 48 H 0.056 0.944 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.308 14.040 0.969 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.340 5.340 3 C 0.290 3.710 4 O -0.473 6.473 5 C -0.183 4.183 6 C -0.148 4.148 7 C 0.034 3.966 8 H 0.097 0.903 9 C -0.196 4.196 10 C 0.288 3.712 11 O -0.464 6.464 12 N -0.323 5.323 13 C 0.100 3.900 14 C -0.565 4.565 15 H 0.051 0.949 16 C -0.183 4.183 17 N -0.585 5.585 18 Si 0.760 3.240 19 H -0.205 1.205 20 H -0.201 1.201 21 H -0.165 1.165 22 C -0.009 4.009 23 C -0.081 4.081 24 C -0.208 4.208 25 C -0.189 4.189 26 C -0.196 4.196 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.049 0.951 48 H 0.075 0.925 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.431 14.402 0.567 21.115 hybrid contribution -1.880 -0.579 0.119 1.970 sum 13.551 13.823 0.686 19.370 Atomic orbital electron populations 1.21419 0.79219 1.00721 1.02078 1.48319 1.06268 1.07806 1.71593 1.21882 0.91553 0.83475 0.74041 1.90670 1.80138 1.23006 1.53501 1.22411 0.90841 0.98432 1.06613 1.22763 0.93877 0.94190 1.03934 1.21672 0.92585 0.86450 0.95874 0.90276 1.22535 0.94406 1.03536 0.99099 1.21218 0.90982 0.77475 0.81565 1.90640 1.49285 1.57518 1.48987 1.47885 1.13759 1.60559 1.10097 1.19450 0.82409 0.91819 0.96320 1.21588 0.98697 0.92806 1.43375 0.94936 1.25716 1.01787 0.95286 0.95530 1.70034 1.30004 1.07768 1.50718 0.85886 0.79560 0.79528 0.79041 1.20482 1.20126 1.16533 1.21851 0.90735 0.97768 0.90506 1.20946 0.96439 0.94750 0.95986 1.22110 0.97156 1.01738 0.99826 1.21767 0.96935 1.02312 0.97868 1.22005 1.01852 0.97037 0.98716 0.91931 0.93039 0.92520 0.86434 0.85453 0.88370 0.85248 0.84890 0.86136 0.92732 0.97351 0.92445 0.91534 0.87689 0.92897 0.91703 0.94345 0.90453 0.91710 0.92446 0.95068 0.92534 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.53 9.52 127.76 1.22 4.75 16 2 N -0.61 -16.56 2.96 -818.57 -2.42 -18.98 16 3 C 0.50 13.10 8.02 87.90 0.71 13.80 16 4 O -0.59 -20.80 17.35 -3.04 -0.05 -20.86 16 5 C -0.14 -1.94 6.85 30.59 0.21 -1.73 16 6 C -0.11 -1.21 6.72 31.71 0.21 -1.00 16 7 C 0.14 2.98 2.82 45.50 0.13 3.11 16 8 H 0.08 2.05 7.77 -2.39 -0.02 2.03 16 9 C -0.16 -3.44 3.50 29.85 0.10 -3.34 16 10 C 0.50 17.84 5.38 87.66 0.47 18.32 16 11 O -0.58 -26.12 12.25 -3.04 -0.04 -26.15 16 12 N -0.59 -22.12 1.95 -826.16 -1.61 -23.74 16 13 C 0.22 10.48 3.24 85.63 0.28 10.76 16 14 C -0.53 -30.15 9.94 25.60 0.25 -29.89 16 15 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 16 C 0.01 0.86 5.47 84.66 0.46 1.32 16 17 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 18 Si 0.94 44.67 27.47 68.60 1.88 46.55 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.24 -10.49 6.54 99.48 0.65 -9.83 16 22 C 0.11 3.11 4.53 86.38 0.39 3.50 16 23 C -0.08 -1.80 0.85 -52.18 -0.04 -1.85 16 24 C -0.15 -4.11 7.18 71.98 0.52 -3.60 16 25 C -0.13 -2.07 8.45 71.98 0.61 -1.46 16 26 C -0.14 -3.04 7.00 71.98 0.50 -2.53 16 27 H 0.06 2.03 7.54 -2.39 -0.02 2.01 16 28 H 0.05 1.92 5.80 -2.39 -0.01 1.91 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.12 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.13 0.58 7.86 -2.39 -0.02 0.56 16 34 H 0.13 2.16 7.79 -2.39 -0.02 2.14 16 35 H 0.12 2.19 4.22 -2.38 -0.01 2.18 16 36 H 0.06 2.44 4.25 -2.39 -0.01 2.43 16 37 H 0.01 0.44 6.86 -2.39 -0.02 0.42 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 40 H 0.11 2.09 6.37 -2.38 -0.02 2.07 16 41 H 0.05 1.47 8.12 -2.38 -0.02 1.45 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.04 1.27 5.41 -2.38 -0.01 1.26 16 44 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.03 0.87 5.58 -2.39 -0.01 0.86 16 48 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 49 H 0.08 1.28 6.72 -2.39 -0.02 1.27 16 Total: -1.00 -81.45 368.18 4.96 -76.49 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.88 Total: 15.42 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.02 Total: 10.16 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -3.73 Total: -101.61 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -0.09 Total: -47.01 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -81.45 4.96 -76.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597160281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.956 kcal (2) G-P(sol) polarization free energy of solvation -81.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds