Wall clock time and date at job start Fri Apr 10 2020 22:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21281 * 120.00023 * 2 1 4 4 N 1.34780 * 120.00425 * 179.97438 * 2 1 3 5 5 C 1.46495 * 120.00408 * 180.02562 * 4 2 1 6 6 H 1.08994 * 109.47116 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47050 * 59.99790 * 5 4 2 8 8 C 1.53003 * 109.47208 * 64.99838 * 7 5 4 9 9 C 1.53001 * 109.47208 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47401 * 64.99964 * 9 8 7 11 11 C 1.52995 * 109.47161 * 185.00377 * 9 8 7 12 12 C 1.50700 * 109.47126 * 299.99985 * 5 4 2 13 13 O 1.21275 * 119.99883 * 19.99800 * 12 5 4 14 14 N 1.34774 * 119.99766 * 200.00122 * 12 5 4 15 15 C 1.46501 * 119.99830 * 180.02562 * 14 12 5 16 16 C 1.52995 * 109.47335 * 178.27615 * 15 14 12 17 17 C 1.50697 * 115.55293 * 65.13558 * 16 15 14 18 18 H 1.08006 * 119.99890 * 265.40827 * 17 16 15 19 19 C 1.37873 * 120.00141 * 85.40875 * 17 16 15 20 20 N 1.31520 * 119.99953 * 353.55472 * 19 17 16 21 21 Si 1.86798 * 120.00247 * 173.55116 * 19 17 16 22 22 H 1.48500 * 109.46948 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47083 * 119.99785 * 21 19 17 24 24 H 1.48499 * 109.47577 * 239.99959 * 21 19 17 25 25 C 1.53007 * 117.49573 * 279.46705 * 16 15 14 26 26 C 1.53001 * 117.49796 * 210.80834 * 16 15 14 27 27 H 1.09000 * 109.47498 * 270.00142 * 1 2 3 28 28 H 1.09001 * 109.47356 * 30.00469 * 1 2 3 29 29 H 1.08999 * 109.46928 * 150.00304 * 1 2 3 30 30 H 0.96997 * 119.99406 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.47258 * 304.99882 * 7 5 4 32 32 H 1.09001 * 109.47259 * 185.00136 * 7 5 4 33 33 H 1.09001 * 109.46746 * 60.00371 * 8 7 5 34 34 H 1.08991 * 109.47219 * 300.00156 * 8 7 5 35 35 H 1.09007 * 109.46962 * 304.99843 * 9 8 7 36 36 H 1.09003 * 109.47011 * 300.00475 * 10 9 8 37 37 H 1.09005 * 109.46688 * 59.99788 * 10 9 8 38 38 H 1.08993 * 109.47451 * 180.02562 * 10 9 8 39 39 H 1.09001 * 109.47541 * 59.99876 * 11 9 8 40 40 H 1.08999 * 109.47300 * 179.97438 * 11 9 8 41 41 H 1.08996 * 109.47328 * 299.99952 * 11 9 8 42 42 H 0.96992 * 120.00177 * 359.97438 * 14 12 5 43 43 H 1.09006 * 109.46911 * 298.27102 * 15 14 12 44 44 H 1.09000 * 109.47333 * 58.26959 * 15 14 12 45 45 H 0.96998 * 119.99992 * 185.05854 * 20 19 17 46 46 H 1.08999 * 117.49338 * 359.97438 * 25 16 15 47 47 H 1.09000 * 117.49828 * 145.01596 * 25 16 15 48 48 H 1.09002 * 117.50204 * 214.97219 * 26 16 15 49 49 H 1.09002 * 117.50043 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0092 -2.1948 0.0019 7 6 4.1554 -0.4456 1.2504 8 6 3.7501 -1.2354 2.4965 9 6 4.2591 -0.5135 3.7458 10 6 3.5544 0.8382 3.8765 11 6 3.9635 -1.3644 4.9825 12 6 4.1487 -0.4570 -1.2293 13 8 3.4205 0.3042 -1.8302 14 7 5.4076 -0.6680 -1.6620 15 6 5.8966 0.0227 -2.8578 16 6 7.3580 -0.3571 -3.1044 17 6 7.6050 -1.8042 -3.4445 18 1 7.8690 -2.5045 -2.6658 19 6 7.4940 -2.2343 -4.7498 20 7 7.0504 -1.4138 -5.6770 21 14 7.9738 -3.9822 -5.2013 22 1 8.4381 -4.6977 -3.9857 23 1 6.7972 -4.6870 -5.7708 24 1 9.0667 -3.9518 -6.2061 25 6 8.4247 0.3671 -2.2806 26 6 8.2571 0.6880 -3.7679 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6959 -2.0072 0.0013 31 1 3.7208 0.5530 1.2958 32 1 5.2417 -0.3673 1.2071 33 1 4.1848 -2.2340 2.4510 34 1 2.6639 -1.3136 2.5397 35 1 5.3344 -0.3560 3.6617 36 1 3.7650 1.4444 2.9953 37 1 2.4791 0.6807 3.9605 38 1 3.9173 1.3527 4.7662 39 1 4.4656 -2.3274 4.8895 40 1 4.3265 -0.8503 5.8725 41 1 2.8883 -1.5220 5.0667 42 1 5.9900 -1.2766 -1.1812 43 1 5.2949 -0.2703 -3.7182 44 1 5.8208 1.1002 -2.7115 45 1 6.9026 -1.7365 -6.5797 46 1 8.0853 1.1143 -1.5632 47 1 9.3053 -0.2032 -1.9849 48 1 9.0277 0.3288 -4.4501 49 1 7.8074 1.6460 -4.0291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597610411.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:42 Heat of formation + Delta-G solvation = -74.524745 kcal Electronic energy + Delta-G solvation = -26956.964453 eV Core-core repulsion = 23304.990370 eV Total energy + Delta-G solvation = -3651.974083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22498 -38.23943 -37.03073 -36.54706 -34.48462 -33.19222 -31.97669 -31.60112 -29.30024 -27.37422 -27.23275 -25.73413 -24.75204 -22.43572 -21.22196 -20.82830 -19.91126 -19.49218 -18.98544 -17.39036 -16.83921 -15.90185 -15.74274 -15.38280 -14.84406 -14.68519 -14.61532 -14.33961 -14.10089 -13.82461 -13.61345 -13.32428 -13.03928 -12.92025 -12.57402 -12.48188 -12.38074 -12.00482 -11.92956 -11.71284 -11.61115 -11.40838 -11.32178 -11.03306 -10.91400 -10.77130 -10.69310 -10.58585 -10.52484 -10.25302 -9.75237 -9.55003 -9.33319 -8.94231 -8.63587 -8.49903 -8.16925 -8.00386 -6.07975 -4.16692 2.90377 3.23102 3.23449 3.32620 3.34341 3.43302 3.98235 4.34388 4.67672 4.75582 4.80797 4.91471 5.13280 5.18279 5.20685 5.23508 5.30581 5.35614 5.39377 5.43069 5.50300 5.58798 5.66612 5.72210 5.75282 5.84928 5.86616 6.00079 6.05725 6.07264 6.12133 6.29747 6.36600 6.42248 6.50290 6.59365 6.62452 6.71983 6.93813 7.11569 7.35972 7.46619 7.51116 7.67107 7.81040 8.34590 8.38083 8.54737 8.84277 9.02465 9.49957 10.99880 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.003666 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.633772 B = 7635.396160 C = 8165.333309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.512 6.512 4 N -0.721 5.721 5 C 0.134 3.866 6 H 0.104 0.896 7 C -0.135 4.135 8 C -0.107 4.107 9 C -0.097 4.097 10 C -0.148 4.148 11 C -0.146 4.146 12 C 0.492 3.508 13 O -0.528 6.528 14 N -0.705 5.705 15 C 0.167 3.833 16 C 0.028 3.972 17 C -0.499 4.499 18 H 0.060 0.940 19 C 0.073 3.927 20 N -0.874 5.874 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.283 1.283 25 C -0.210 4.210 26 C -0.149 4.149 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.400 0.600 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.397 0.603 43 H 0.069 0.931 44 H 0.035 0.965 45 H 0.261 0.739 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 -2.274 17.411 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.301 3.699 3 O -0.386 6.386 4 N -0.374 5.374 5 C 0.025 3.975 6 H 0.121 0.879 7 C -0.173 4.173 8 C -0.145 4.145 9 C -0.116 4.116 10 C -0.206 4.206 11 C -0.203 4.203 12 C 0.275 3.725 13 O -0.404 6.404 14 N -0.355 5.355 15 C 0.044 3.956 16 C 0.027 3.973 17 C -0.537 4.537 18 H 0.078 0.922 19 C -0.131 4.131 20 N -0.510 5.510 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.248 4.248 26 C -0.187 4.187 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.233 0.767 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.231 0.769 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.630 -0.885 16.725 19.319 hybrid contribution 0.335 -1.748 -0.339 1.812 sum -9.295 -2.633 16.386 19.022 Atomic orbital electron populations 1.21848 0.92550 1.04668 1.03905 1.20532 0.90021 0.83719 0.75656 1.90712 1.70105 1.31153 1.46618 1.45671 1.05609 1.08870 1.77284 1.20880 0.81511 1.00752 0.94362 0.87855 1.22013 1.01529 1.01819 0.91949 1.21594 1.00985 0.98542 0.93379 1.21112 1.00418 0.95415 0.94645 1.21878 1.00175 0.96778 1.01730 1.21832 1.01375 0.99654 0.97452 1.20658 0.82657 0.83221 0.85989 1.90700 1.55992 1.36154 1.57507 1.45923 1.12876 1.46881 1.29816 1.20926 0.95886 0.92995 0.85813 1.19042 0.86421 0.93583 0.98219 1.20373 1.48682 0.91781 0.92815 0.92157 1.24993 0.94577 0.97124 0.96380 1.69995 1.43690 1.34510 1.02794 0.86589 0.78317 0.84802 0.78582 1.19712 1.21093 1.20952 1.23020 1.03299 1.04330 0.94111 1.22489 1.04071 0.98915 0.93214 0.89518 0.89149 0.90620 0.76652 0.88664 0.90751 0.92037 0.92022 0.91159 0.92047 0.93040 0.93141 0.92771 0.92931 0.92930 0.76920 0.91238 0.94686 0.92923 0.91647 0.90386 0.89866 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.30 36.00 0.37 -1.25 16 2 C 0.51 7.29 6.70 -10.99 -0.07 7.22 16 3 O -0.51 -9.79 12.96 -17.93 -0.23 -10.02 16 4 N -0.72 -8.63 4.65 -54.94 -0.26 -8.88 16 5 C 0.13 1.81 3.01 -69.08 -0.21 1.61 16 6 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 7 C -0.13 -1.68 4.30 -26.73 -0.11 -1.80 16 8 C -0.11 -1.03 4.57 -26.73 -0.12 -1.15 16 9 C -0.10 -0.90 2.92 -90.62 -0.26 -1.16 16 10 C -0.15 -1.47 8.95 37.16 0.33 -1.14 16 11 C -0.15 -1.14 9.19 37.16 0.34 -0.79 16 12 C 0.49 9.40 6.82 -10.99 -0.07 9.32 16 13 O -0.53 -12.38 13.68 -17.93 -0.25 -12.62 16 14 N -0.70 -13.81 5.47 -60.30 -0.33 -14.14 16 15 C 0.17 3.89 5.50 -4.04 -0.02 3.87 16 16 C 0.03 0.66 1.38 -155.66 -0.21 0.45 16 17 C -0.50 -12.75 8.63 -34.44 -0.30 -13.05 16 18 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 19 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 20 N -0.87 -24.34 12.91 55.43 0.72 -23.62 16 21 Si 0.89 20.38 29.55 -169.99 -5.02 15.36 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.21 -4.43 9.96 -26.69 -0.27 -4.69 16 26 C -0.15 -3.46 9.42 -26.69 -0.25 -3.71 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.40 3.31 8.83 -40.82 -0.36 2.95 16 31 H 0.09 1.46 4.47 -51.93 -0.23 1.23 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.58 7.75 -51.93 -0.40 0.18 16 35 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.40 6.98 8.37 -40.82 -0.34 6.64 16 43 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 44 H 0.03 0.83 8.09 -51.93 -0.42 0.41 16 45 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 46 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 48 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 49 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -33.14 396.19 -9.19 -42.33 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -8.83 Total: 10.07 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.96 Total: -4.43 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.13 Total: -46.65 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.48 Total: -22.64 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.14 -9.19 -42.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610411.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.198 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds