Wall clock time and date at job start Fri Apr 10 2020 22:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21281 * 120.00023 * 2 1 4 4 N 1.34780 * 120.00425 * 179.97438 * 2 1 3 5 5 C 1.46495 * 120.00408 * 180.02562 * 4 2 1 6 6 H 1.08994 * 109.47116 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47050 * 59.99790 * 5 4 2 8 8 C 1.53003 * 109.47208 * 64.99838 * 7 5 4 9 9 C 1.53001 * 109.47208 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47401 * 64.99964 * 9 8 7 11 11 C 1.52995 * 109.47161 * 185.00377 * 9 8 7 12 12 C 1.50700 * 109.47126 * 299.99985 * 5 4 2 13 13 O 1.21275 * 119.99883 * 19.99800 * 12 5 4 14 14 N 1.34774 * 119.99766 * 200.00122 * 12 5 4 15 15 C 1.46501 * 119.99830 * 180.02562 * 14 12 5 16 16 C 1.52995 * 109.47335 * 178.27615 * 15 14 12 17 17 C 1.50697 * 115.55293 * 65.13558 * 16 15 14 18 18 H 1.08006 * 119.99890 * 265.40827 * 17 16 15 19 19 C 1.37873 * 120.00141 * 85.40875 * 17 16 15 20 20 N 1.31520 * 119.99953 * 353.55472 * 19 17 16 21 21 Si 1.86798 * 120.00247 * 173.55116 * 19 17 16 22 22 H 1.48500 * 109.46948 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47083 * 119.99785 * 21 19 17 24 24 H 1.48499 * 109.47577 * 239.99959 * 21 19 17 25 25 C 1.53007 * 117.49573 * 279.46705 * 16 15 14 26 26 C 1.53001 * 117.49796 * 210.80834 * 16 15 14 27 27 H 1.09000 * 109.47498 * 270.00142 * 1 2 3 28 28 H 1.09001 * 109.47356 * 30.00469 * 1 2 3 29 29 H 1.08999 * 109.46928 * 150.00304 * 1 2 3 30 30 H 0.96997 * 119.99406 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.47258 * 304.99882 * 7 5 4 32 32 H 1.09001 * 109.47259 * 185.00136 * 7 5 4 33 33 H 1.09001 * 109.46746 * 60.00371 * 8 7 5 34 34 H 1.08991 * 109.47219 * 300.00156 * 8 7 5 35 35 H 1.09007 * 109.46962 * 304.99843 * 9 8 7 36 36 H 1.09003 * 109.47011 * 300.00475 * 10 9 8 37 37 H 1.09005 * 109.46688 * 59.99788 * 10 9 8 38 38 H 1.08993 * 109.47451 * 180.02562 * 10 9 8 39 39 H 1.09001 * 109.47541 * 59.99876 * 11 9 8 40 40 H 1.08999 * 109.47300 * 179.97438 * 11 9 8 41 41 H 1.08996 * 109.47328 * 299.99952 * 11 9 8 42 42 H 0.96992 * 120.00177 * 359.97438 * 14 12 5 43 43 H 1.09006 * 109.46911 * 298.27102 * 15 14 12 44 44 H 1.09000 * 109.47333 * 58.26959 * 15 14 12 45 45 H 0.96998 * 119.99992 * 185.05854 * 20 19 17 46 46 H 1.08999 * 117.49338 * 359.97438 * 25 16 15 47 47 H 1.09000 * 117.49828 * 145.01596 * 25 16 15 48 48 H 1.09002 * 117.50204 * 214.97219 * 26 16 15 49 49 H 1.09002 * 117.50043 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0092 -2.1948 0.0019 7 6 4.1554 -0.4456 1.2504 8 6 3.7501 -1.2354 2.4965 9 6 4.2591 -0.5135 3.7458 10 6 3.5544 0.8382 3.8765 11 6 3.9635 -1.3644 4.9825 12 6 4.1487 -0.4570 -1.2293 13 8 3.4205 0.3042 -1.8302 14 7 5.4076 -0.6680 -1.6620 15 6 5.8966 0.0227 -2.8578 16 6 7.3580 -0.3571 -3.1044 17 6 7.6050 -1.8042 -3.4445 18 1 7.8690 -2.5045 -2.6658 19 6 7.4940 -2.2343 -4.7498 20 7 7.0504 -1.4138 -5.6770 21 14 7.9738 -3.9822 -5.2013 22 1 8.4381 -4.6977 -3.9857 23 1 6.7972 -4.6870 -5.7708 24 1 9.0667 -3.9518 -6.2061 25 6 8.4247 0.3671 -2.2806 26 6 8.2571 0.6880 -3.7679 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6959 -2.0072 0.0013 31 1 3.7208 0.5530 1.2958 32 1 5.2417 -0.3673 1.2071 33 1 4.1848 -2.2340 2.4510 34 1 2.6639 -1.3136 2.5397 35 1 5.3344 -0.3560 3.6617 36 1 3.7650 1.4444 2.9953 37 1 2.4791 0.6807 3.9605 38 1 3.9173 1.3527 4.7662 39 1 4.4656 -2.3274 4.8895 40 1 4.3265 -0.8503 5.8725 41 1 2.8883 -1.5220 5.0667 42 1 5.9900 -1.2766 -1.1812 43 1 5.2949 -0.2703 -3.7182 44 1 5.8208 1.1002 -2.7115 45 1 6.9026 -1.7365 -6.5797 46 1 8.0853 1.1143 -1.5632 47 1 9.3053 -0.2032 -1.9849 48 1 9.0277 0.3288 -4.4501 49 1 7.8074 1.6460 -4.0291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597610411.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:41 Heat of formation + Delta-G solvation = -95.511788 kcal Electronic energy + Delta-G solvation = -26957.874519 eV Core-core repulsion = 23304.990370 eV Total energy + Delta-G solvation = -3652.884150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48561 -39.71303 -38.38931 -37.82961 -35.59646 -34.88846 -33.96598 -32.61257 -30.13495 -28.76970 -27.99141 -27.53851 -26.25656 -23.43988 -22.98708 -22.08649 -21.30968 -20.71927 -20.44703 -18.46453 -18.42684 -17.57385 -16.97450 -16.65705 -16.26176 -16.16376 -15.94360 -15.82211 -15.26524 -15.02138 -14.75248 -14.59089 -14.29143 -14.16561 -13.94830 -13.57148 -13.45956 -13.27541 -13.06295 -12.92860 -12.84850 -12.81671 -12.67588 -12.54836 -12.30873 -12.13075 -12.06732 -11.62033 -11.48756 -11.47685 -11.38580 -11.04678 -10.84776 -10.48177 -10.47194 -10.17354 -9.79311 -9.73724 -8.08934 -6.22827 1.42435 1.46185 1.55851 1.72094 1.90706 2.30043 2.43267 2.60440 3.19367 3.46648 3.77404 3.92597 3.93276 4.10907 4.12891 4.21182 4.25149 4.36523 4.50742 4.54052 4.55967 4.63436 4.69053 4.71970 4.72562 4.83414 4.89082 4.95340 4.97048 5.02651 5.05591 5.08443 5.13077 5.20178 5.24325 5.28907 5.41899 5.50498 5.56728 5.57558 5.58741 5.61537 5.71077 5.78911 6.36753 6.74035 6.81739 6.86945 7.44973 7.47265 7.58371 8.99060 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.003666 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.633772 B = 7635.396160 C = 8165.333309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.502 3.498 3 O -0.570 6.570 4 N -0.708 5.708 5 C 0.141 3.859 6 H 0.141 0.859 7 C -0.127 4.127 8 C -0.098 4.098 9 C -0.098 4.098 10 C -0.146 4.146 11 C -0.141 4.141 12 C 0.484 3.516 13 O -0.575 6.575 14 N -0.699 5.699 15 C 0.185 3.815 16 C 0.009 3.991 17 C -0.501 4.501 18 H 0.069 0.931 19 C 0.023 3.977 20 N -0.911 5.911 21 Si 0.953 3.047 22 H -0.257 1.257 23 H -0.287 1.287 24 H -0.287 1.287 25 C -0.175 4.175 26 C -0.163 4.163 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.421 0.579 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.410 0.590 43 H 0.025 0.975 44 H 0.021 0.979 45 H 0.258 0.742 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.065 0.935 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 -4.897 19.957 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.291 3.709 3 O -0.447 6.447 4 N -0.363 5.363 5 C 0.032 3.968 6 H 0.159 0.841 7 C -0.166 4.166 8 C -0.135 4.135 9 C -0.116 4.116 10 C -0.204 4.204 11 C -0.199 4.199 12 C 0.270 3.730 13 O -0.454 6.454 14 N -0.350 5.350 15 C 0.060 3.940 16 C 0.008 3.992 17 C -0.538 4.538 18 H 0.087 0.913 19 C -0.178 4.178 20 N -0.549 5.549 21 Si 0.779 3.221 22 H -0.181 1.181 23 H -0.213 1.213 24 H -0.214 1.214 25 C -0.212 4.212 26 C -0.201 4.201 27 H 0.133 0.867 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.258 0.742 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.245 0.755 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.067 0.933 46 H 0.102 0.898 47 H 0.109 0.891 48 H 0.084 0.916 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.846 -3.575 19.317 21.974 hybrid contribution 0.387 -0.862 -1.130 1.474 sum -9.459 -4.438 18.186 20.974 Atomic orbital electron populations 1.21851 0.88935 1.05391 1.05958 1.21424 0.91913 0.83296 0.74281 1.90697 1.71591 1.33243 1.49200 1.45614 1.05033 1.09529 1.76122 1.20921 0.82496 1.01849 0.91539 0.84101 1.21934 1.01139 1.00691 0.92847 1.21543 1.01433 0.98887 0.91671 1.21116 1.00011 0.95112 0.95382 1.21853 1.00475 0.97200 1.00836 1.21786 1.01849 0.99674 0.96550 1.21769 0.81742 0.82530 0.86973 1.90680 1.57128 1.38258 1.59360 1.45806 1.13636 1.46845 1.28719 1.20434 0.95313 0.92385 0.85847 1.19070 0.86835 0.93259 1.00032 1.20686 1.47543 0.92680 0.92927 0.91330 1.25755 0.94691 1.00805 0.96531 1.70138 1.45360 1.36385 1.02981 0.85585 0.77527 0.80478 0.78498 1.18086 1.21348 1.21369 1.23000 1.02140 1.03345 0.92757 1.22427 1.03966 0.98911 0.94797 0.86699 0.90360 0.87915 0.74154 0.91750 0.90923 0.89924 0.91492 0.91563 0.94601 0.92863 0.92392 0.91880 0.92602 0.92429 0.75469 0.95666 0.96074 0.93313 0.89828 0.89115 0.91616 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.30 71.23 0.73 -2.06 16 2 C 0.50 13.95 6.70 87.66 0.59 14.54 16 3 O -0.57 -22.48 12.96 19.43 0.25 -22.23 16 4 N -0.71 -15.63 4.65 -446.11 -2.07 -17.70 16 5 C 0.14 3.59 3.01 44.25 0.13 3.72 16 6 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 7 C -0.13 -3.04 4.30 30.60 0.13 -2.90 16 8 C -0.10 -1.60 4.57 30.60 0.14 -1.46 16 9 C -0.10 -1.60 2.92 -10.80 -0.03 -1.63 16 10 C -0.15 -2.79 8.95 71.98 0.64 -2.15 16 11 C -0.14 -1.78 9.19 71.98 0.66 -1.12 16 12 C 0.48 18.60 6.82 87.66 0.60 19.20 16 13 O -0.58 -27.98 13.68 19.45 0.27 -27.72 16 14 N -0.70 -27.41 5.47 -463.07 -2.54 -29.95 16 15 C 0.18 8.90 5.50 86.38 0.48 9.37 16 16 C 0.01 0.42 1.38 -52.93 -0.07 0.34 16 17 C -0.50 -25.29 8.63 25.60 0.22 -25.07 16 18 H 0.07 3.29 7.82 -2.91 -0.02 3.27 16 19 C 0.02 1.19 5.39 84.65 0.46 1.65 16 20 N -0.91 -51.97 12.91 21.45 0.28 -51.69 16 21 Si 0.95 41.57 29.55 68.60 2.03 43.60 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 25 C -0.18 -7.14 9.96 30.62 0.30 -6.84 16 26 C -0.16 -7.67 9.42 30.62 0.29 -7.38 16 27 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.42 5.61 8.83 -92.71 -0.82 4.79 16 31 H 0.06 2.01 4.47 -2.39 -0.01 2.00 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.05 7.75 -2.39 -0.02 1.03 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 36 H 0.03 0.86 6.56 -2.39 -0.02 0.84 16 37 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 42 H 0.41 13.85 8.37 -92.71 -0.78 13.08 16 43 H 0.02 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.02 1.05 8.09 -2.39 -0.02 1.03 16 45 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 46 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 47 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 48 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 49 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -75.86 396.19 2.82 -73.04 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.66 Total: 34.44 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.27 Total: -1.79 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -4.33 Total: -99.34 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: 0.52 Total: -49.94 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -75.86 2.82 -73.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610411.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.474 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds