Wall clock time and date at job start Fri Apr 10 2020 22:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 119.99982 * 2 1 4 4 N 1.34778 * 120.00298 * 180.02562 * 2 1 3 5 5 C 1.46491 * 120.00221 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.47311 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47153 * 299.99759 * 5 4 2 8 8 C 1.53000 * 109.47301 * 297.02644 * 7 5 4 9 9 C 1.52998 * 109.47516 * 174.16246 * 8 7 5 10 10 C 1.52992 * 109.47412 * 294.16780 * 8 7 5 11 11 C 1.50701 * 109.47178 * 59.99806 * 5 4 2 12 12 O 1.21284 * 119.99896 * 339.99593 * 11 5 4 13 13 N 1.34775 * 120.00127 * 160.00268 * 11 5 4 14 14 C 1.46929 * 120.62943 * 359.97438 * 13 11 5 15 15 C 1.53183 * 108.77808 * 233.61218 * 14 13 11 16 16 C 1.53037 * 109.31384 * 305.36582 * 15 14 13 17 17 C 1.53042 * 109.53826 * 61.36302 * 16 15 14 18 18 H 1.09007 * 109.49254 * 58.62231 * 17 16 15 19 19 C 1.50696 * 109.49888 * 178.68096 * 17 16 15 20 20 H 1.07999 * 119.99845 * 120.00482 * 19 17 16 21 21 C 1.37878 * 120.00358 * 300.27669 * 19 17 16 22 22 N 1.31515 * 120.00136 * 179.72222 * 21 19 17 23 23 Si 1.86800 * 119.99745 * 359.72595 * 21 19 17 24 24 H 1.48500 * 109.47280 * 89.99931 * 23 21 19 25 25 H 1.48504 * 109.46980 * 209.99718 * 23 21 19 26 26 H 1.48489 * 109.47137 * 329.99750 * 23 21 19 27 27 C 1.46921 * 120.63085 * 180.02562 * 13 11 5 28 28 H 1.08996 * 109.47133 * 239.99260 * 1 2 3 29 29 H 1.09001 * 109.47389 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47054 * 119.99256 * 1 2 3 31 31 H 0.97000 * 119.99582 * 359.97438 * 4 2 1 32 32 H 1.09006 * 109.47146 * 57.02823 * 7 5 4 33 33 H 1.08998 * 109.47561 * 177.02685 * 7 5 4 34 34 H 1.09006 * 109.47127 * 54.16613 * 8 7 5 35 35 H 1.09005 * 109.46723 * 58.33370 * 9 8 7 36 36 H 1.08994 * 109.47459 * 178.33227 * 9 8 7 37 37 H 1.09000 * 109.47108 * 298.33960 * 9 8 7 38 38 H 1.09003 * 109.47512 * 59.99545 * 10 8 7 39 39 H 1.09000 * 109.47462 * 179.97438 * 10 8 7 40 40 H 1.09005 * 109.47360 * 299.99965 * 10 8 7 41 41 H 1.09003 * 109.58328 * 113.82440 * 14 13 11 42 42 H 1.09003 * 109.58607 * 353.40379 * 14 13 11 43 43 H 1.09001 * 109.49806 * 185.41482 * 15 14 13 44 44 H 1.08999 * 109.49887 * 65.31670 * 15 14 13 45 45 H 1.09003 * 109.46051 * 301.34368 * 16 15 14 46 46 H 1.09004 * 109.46324 * 181.38676 * 16 15 14 47 47 H 0.97003 * 120.00021 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.59145 * 6.60213 * 27 13 11 49 49 H 1.08999 * 109.58477 * 246.17380 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0092 -2.1948 -0.0010 7 6 4.1554 -0.4457 -1.2504 8 6 3.7069 -1.2086 -2.4985 9 6 4.0898 -0.4127 -3.7478 10 6 4.3929 -2.5756 -2.5346 11 6 4.1487 -0.4570 1.2293 12 8 3.4205 0.3044 1.8301 13 7 5.4076 -0.6678 1.6620 14 6 6.3013 -1.5876 0.9450 15 6 6.8491 -2.6172 1.9381 16 6 7.5075 -1.8881 3.1116 17 6 6.4644 -1.0301 3.8313 18 1 5.6513 -1.6651 4.1832 19 6 7.1062 -0.3379 5.0059 20 1 7.1173 0.7408 5.0569 21 6 7.6843 -1.0815 6.0129 22 7 8.2492 -0.4773 7.0353 23 14 7.6651 -2.9473 5.9248 24 1 8.8803 -3.4220 5.2154 25 1 7.6440 -3.5076 7.2999 26 1 6.4557 -3.3957 5.1890 27 6 5.9119 0.0168 2.8601 28 1 -0.3633 -0.5139 0.8899 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5137 -0.8901 31 1 1.6959 -2.0072 -0.0005 32 1 3.7491 0.5655 -1.2771 33 1 5.2440 -0.3992 -1.2246 34 1 2.6258 -1.3452 -2.4720 35 1 5.1676 -0.2506 -3.7591 36 1 3.7969 -0.9699 -4.6376 37 1 3.5778 0.5495 -3.7367 38 1 4.1201 -3.1427 -1.6446 39 1 4.0731 -3.1193 -3.4235 40 1 5.4740 -2.4391 -2.5611 41 1 7.1272 -1.0271 0.5069 42 1 5.7456 -2.0982 0.1585 43 1 7.5872 -3.2460 1.4403 44 1 6.0321 -3.2371 2.3073 45 1 8.3085 -1.2494 2.7390 46 1 7.9199 -2.6185 3.8077 47 1 8.6563 -1.0004 7.7435 48 1 5.0993 0.5646 3.3373 49 1 6.7059 0.7084 2.5788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:46 Heat of formation + Delta-G solvation = -81.902976 kcal Electronic energy + Delta-G solvation = -27888.562129 eV Core-core repulsion = 24236.268102 eV Total energy + Delta-G solvation = -3652.294027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.65135 -38.88914 -36.96055 -36.66509 -34.03730 -33.49051 -31.77811 -31.02199 -30.36495 -28.40074 -27.42063 -25.65464 -25.02834 -23.70376 -21.68104 -21.16893 -20.14386 -19.51833 -18.43428 -17.69760 -16.77979 -16.48652 -16.08934 -15.57606 -15.07887 -14.77269 -14.61670 -14.47911 -13.97995 -13.80399 -13.63774 -13.54209 -13.20002 -12.84064 -12.65114 -12.56860 -12.52598 -12.46469 -12.37897 -12.17725 -11.96448 -11.83020 -11.38855 -11.17636 -10.98496 -10.95266 -10.82397 -10.69063 -10.31991 -10.14670 -9.87418 -9.81552 -9.46913 -9.41149 -9.05458 -8.66409 -8.56478 -8.01469 -6.09322 -4.09167 2.75068 3.01138 3.18826 3.22617 3.34427 3.37017 3.55262 4.37995 4.51777 4.60482 4.68975 4.82847 4.85942 4.96195 5.12726 5.15949 5.20669 5.23788 5.31269 5.34227 5.40552 5.47523 5.51673 5.54916 5.63204 5.70408 5.78047 5.83924 5.85250 5.96913 6.00744 6.06058 6.12613 6.20877 6.22829 6.35443 6.42495 6.55823 6.70490 6.74677 6.89198 7.15991 7.46943 7.52722 7.73428 7.90481 8.39032 8.48243 8.66971 8.94631 9.52138 11.03815 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.004084 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.882064 B = 6853.812148 C = 7641.897565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.514 3.486 3 O -0.511 6.511 4 N -0.723 5.723 5 C 0.133 3.867 6 H 0.106 0.894 7 C -0.128 4.128 8 C -0.091 4.091 9 C -0.146 4.146 10 C -0.152 4.152 11 C 0.498 3.502 12 O -0.516 6.516 13 N -0.609 5.609 14 C 0.109 3.891 15 C -0.139 4.139 16 C -0.122 4.122 17 C 0.006 3.994 18 H 0.029 0.971 19 C -0.514 4.514 20 H 0.076 0.924 21 C 0.071 3.929 22 N -0.899 5.899 23 Si 0.889 3.111 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.267 1.267 27 C 0.130 3.870 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.400 0.600 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.264 0.736 48 H 0.084 0.916 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 -7.636 -21.788 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.385 6.385 4 N -0.377 5.377 5 C 0.024 3.976 6 H 0.123 0.877 7 C -0.167 4.167 8 C -0.110 4.110 9 C -0.203 4.203 10 C -0.209 4.209 11 C 0.283 3.717 12 O -0.391 6.391 13 N -0.343 5.343 14 C -0.014 4.014 15 C -0.178 4.178 16 C -0.160 4.160 17 C -0.014 4.014 18 H 0.047 0.953 19 C -0.552 4.552 20 H 0.094 0.906 21 C -0.130 4.130 22 N -0.537 5.537 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.225 1.225 26 H -0.192 1.192 27 C 0.009 3.991 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.234 0.766 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.638 -6.422 -21.282 24.644 hybrid contribution 0.076 -1.663 0.215 1.679 sum -10.562 -8.085 -21.067 24.915 Atomic orbital electron populations 1.21887 0.92268 1.05276 1.03683 1.20590 0.90151 0.83631 0.75566 1.90721 1.70199 1.31140 1.46410 1.45668 1.05461 1.09005 1.77525 1.20951 0.81633 1.00807 0.94228 0.87655 1.22019 1.01369 1.01573 0.91706 1.21055 1.00427 0.95037 0.94453 1.21810 1.01638 0.99986 0.96891 1.21946 1.00938 0.96505 1.01524 1.20701 0.81944 0.83036 0.86006 1.90725 1.55323 1.35824 1.57201 1.48291 1.12093 1.44868 1.29078 1.21740 0.93803 0.91541 0.94323 1.22012 1.00370 0.97647 0.97723 1.21984 0.99715 0.98774 0.95479 1.19445 0.94310 0.93892 0.93708 0.95333 1.20924 1.36325 0.95172 1.02783 0.90605 1.24985 0.94653 0.98341 0.95062 1.69897 1.37729 1.35772 1.10290 0.86816 0.78715 0.86470 0.76022 1.20585 1.22544 1.19202 1.21707 0.98643 0.95168 0.83573 0.89663 0.89198 0.89956 0.76572 0.88914 0.90674 0.91173 0.92595 0.92815 0.92690 0.92720 0.92695 0.92356 0.91421 0.90827 0.91730 0.92200 0.91895 0.93248 0.92612 0.89742 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.32 36.01 0.37 -1.12 16 2 C 0.51 6.83 6.70 -10.99 -0.07 6.76 16 3 O -0.51 -9.38 12.95 -17.94 -0.23 -9.61 16 4 N -0.72 -7.90 4.47 -54.94 -0.25 -8.14 16 5 C 0.13 1.63 2.02 -69.09 -0.14 1.49 16 6 H 0.11 1.03 4.86 -51.93 -0.25 0.78 16 7 C -0.13 -1.46 3.77 -26.73 -0.10 -1.56 16 8 C -0.09 -0.77 2.85 -90.62 -0.26 -1.02 16 9 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 10 C -0.15 -1.04 8.97 37.15 0.33 -0.71 16 11 C 0.50 8.83 6.69 -10.99 -0.07 8.76 16 12 O -0.52 -11.45 13.09 -17.94 -0.23 -11.68 16 13 N -0.61 -10.73 2.97 -172.82 -0.51 -11.25 16 14 C 0.11 1.50 5.60 -3.71 -0.02 1.48 16 15 C -0.14 -2.15 6.08 -26.62 -0.16 -2.31 16 16 C -0.12 -2.48 4.66 -26.69 -0.12 -2.60 16 17 C 0.01 0.14 1.84 -91.69 -0.17 -0.03 16 18 H 0.03 0.71 7.21 -51.93 -0.37 0.34 16 19 C -0.51 -14.41 9.15 -34.44 -0.32 -14.73 16 20 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 21 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 22 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 23 Si 0.89 21.80 24.38 -169.99 -4.15 17.65 16 24 H -0.28 -6.55 6.85 56.52 0.39 -6.17 16 25 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 27 C 0.13 2.78 5.65 -3.75 -0.02 2.76 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.84 8.12 -51.93 -0.42 0.41 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.40 2.89 8.83 -40.82 -0.36 2.53 16 32 H 0.09 1.36 6.09 -51.93 -0.32 1.04 16 33 H 0.07 0.83 7.17 -51.93 -0.37 0.46 16 34 H 0.07 0.59 7.53 -51.93 -0.39 0.20 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.35 6.53 -51.93 -0.34 0.01 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.76 5.16 -51.93 -0.27 0.50 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.05 1.08 3.23 -51.93 -0.17 0.91 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.08 2.00 7.01 -51.93 -0.36 1.64 16 49 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -35.95 366.99 -7.88 -43.83 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.30 Total: 2.14 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.51 Total: -1.72 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.01 Total: -46.15 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.47 Total: -21.29 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.15 Total: 17.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.95 -7.88 -43.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.072 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds