Wall clock time and date at job start Fri Apr 10 2020 22:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 119.99982 * 2 1 4 4 N 1.34778 * 120.00298 * 180.02562 * 2 1 3 5 5 C 1.46491 * 120.00221 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.47311 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47153 * 299.99759 * 5 4 2 8 8 C 1.53000 * 109.47301 * 297.02644 * 7 5 4 9 9 C 1.52998 * 109.47516 * 174.16246 * 8 7 5 10 10 C 1.52992 * 109.47412 * 294.16780 * 8 7 5 11 11 C 1.50701 * 109.47178 * 59.99806 * 5 4 2 12 12 O 1.21284 * 119.99896 * 339.99593 * 11 5 4 13 13 N 1.34775 * 120.00127 * 160.00268 * 11 5 4 14 14 C 1.46929 * 120.62943 * 359.97438 * 13 11 5 15 15 C 1.53183 * 108.77808 * 233.61218 * 14 13 11 16 16 C 1.53037 * 109.31384 * 305.36582 * 15 14 13 17 17 C 1.53042 * 109.53826 * 61.36302 * 16 15 14 18 18 H 1.09007 * 109.49254 * 58.62231 * 17 16 15 19 19 C 1.50696 * 109.49888 * 178.68096 * 17 16 15 20 20 H 1.07999 * 119.99845 * 120.00482 * 19 17 16 21 21 C 1.37878 * 120.00358 * 300.27669 * 19 17 16 22 22 N 1.31515 * 120.00136 * 179.72222 * 21 19 17 23 23 Si 1.86800 * 119.99745 * 359.72595 * 21 19 17 24 24 H 1.48500 * 109.47280 * 89.99931 * 23 21 19 25 25 H 1.48504 * 109.46980 * 209.99718 * 23 21 19 26 26 H 1.48489 * 109.47137 * 329.99750 * 23 21 19 27 27 C 1.46921 * 120.63085 * 180.02562 * 13 11 5 28 28 H 1.08996 * 109.47133 * 239.99260 * 1 2 3 29 29 H 1.09001 * 109.47389 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47054 * 119.99256 * 1 2 3 31 31 H 0.97000 * 119.99582 * 359.97438 * 4 2 1 32 32 H 1.09006 * 109.47146 * 57.02823 * 7 5 4 33 33 H 1.08998 * 109.47561 * 177.02685 * 7 5 4 34 34 H 1.09006 * 109.47127 * 54.16613 * 8 7 5 35 35 H 1.09005 * 109.46723 * 58.33370 * 9 8 7 36 36 H 1.08994 * 109.47459 * 178.33227 * 9 8 7 37 37 H 1.09000 * 109.47108 * 298.33960 * 9 8 7 38 38 H 1.09003 * 109.47512 * 59.99545 * 10 8 7 39 39 H 1.09000 * 109.47462 * 179.97438 * 10 8 7 40 40 H 1.09005 * 109.47360 * 299.99965 * 10 8 7 41 41 H 1.09003 * 109.58328 * 113.82440 * 14 13 11 42 42 H 1.09003 * 109.58607 * 353.40379 * 14 13 11 43 43 H 1.09001 * 109.49806 * 185.41482 * 15 14 13 44 44 H 1.08999 * 109.49887 * 65.31670 * 15 14 13 45 45 H 1.09003 * 109.46051 * 301.34368 * 16 15 14 46 46 H 1.09004 * 109.46324 * 181.38676 * 16 15 14 47 47 H 0.97003 * 120.00021 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.59145 * 6.60213 * 27 13 11 49 49 H 1.08999 * 109.58477 * 246.17380 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0092 -2.1948 -0.0010 7 6 4.1554 -0.4457 -1.2504 8 6 3.7069 -1.2086 -2.4985 9 6 4.0898 -0.4127 -3.7478 10 6 4.3929 -2.5756 -2.5346 11 6 4.1487 -0.4570 1.2293 12 8 3.4205 0.3044 1.8301 13 7 5.4076 -0.6678 1.6620 14 6 6.3013 -1.5876 0.9450 15 6 6.8491 -2.6172 1.9381 16 6 7.5075 -1.8881 3.1116 17 6 6.4644 -1.0301 3.8313 18 1 5.6513 -1.6651 4.1832 19 6 7.1062 -0.3379 5.0059 20 1 7.1173 0.7408 5.0569 21 6 7.6843 -1.0815 6.0129 22 7 8.2492 -0.4773 7.0353 23 14 7.6651 -2.9473 5.9248 24 1 8.8803 -3.4220 5.2154 25 1 7.6440 -3.5076 7.2999 26 1 6.4557 -3.3957 5.1890 27 6 5.9119 0.0168 2.8601 28 1 -0.3633 -0.5139 0.8899 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5137 -0.8901 31 1 1.6959 -2.0072 -0.0005 32 1 3.7491 0.5655 -1.2771 33 1 5.2440 -0.3992 -1.2246 34 1 2.6258 -1.3452 -2.4720 35 1 5.1676 -0.2506 -3.7591 36 1 3.7969 -0.9699 -4.6376 37 1 3.5778 0.5495 -3.7367 38 1 4.1201 -3.1427 -1.6446 39 1 4.0731 -3.1193 -3.4235 40 1 5.4740 -2.4391 -2.5611 41 1 7.1272 -1.0271 0.5069 42 1 5.7456 -2.0982 0.1585 43 1 7.5872 -3.2460 1.4403 44 1 6.0321 -3.2371 2.3073 45 1 8.3085 -1.2494 2.7390 46 1 7.9199 -2.6185 3.8077 47 1 8.6563 -1.0004 7.7435 48 1 5.0993 0.5646 3.3373 49 1 6.7059 0.7084 2.5788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904752.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:46 Heat of formation + Delta-G solvation = -107.483400 kcal Electronic energy + Delta-G solvation = -27889.671380 eV Core-core repulsion = 24236.268102 eV Total energy + Delta-G solvation = -3653.403278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.83682 -40.15802 -38.35713 -37.64907 -35.34021 -34.98305 -33.55291 -32.36365 -31.55555 -29.28791 -27.94777 -27.26026 -26.58544 -24.87615 -23.21116 -22.26386 -21.40482 -20.53224 -19.82564 -18.85084 -18.71190 -17.72033 -17.26830 -16.74860 -16.47674 -16.01710 -15.88456 -15.43607 -15.41246 -15.11941 -14.90406 -14.66665 -14.55617 -14.26548 -14.00898 -13.84487 -13.59647 -13.37428 -13.17775 -13.01163 -12.97832 -12.84045 -12.75998 -12.60126 -12.44878 -12.10254 -11.92542 -11.73650 -11.67863 -11.51998 -11.46636 -11.27608 -11.14002 -10.89952 -10.69935 -10.51953 -9.86794 -9.51538 -8.33188 -6.39285 1.27210 1.35165 1.46013 1.61642 1.79336 2.11686 2.30393 2.43404 3.01457 3.46971 3.75229 3.88282 3.96213 4.03851 4.08512 4.14141 4.16097 4.25746 4.30724 4.48712 4.50224 4.56766 4.62076 4.69779 4.71066 4.74645 4.83940 4.86752 4.92794 4.96767 5.05105 5.10461 5.12240 5.13049 5.14204 5.20068 5.34866 5.36709 5.41713 5.49331 5.51152 5.60177 5.65087 5.74463 6.23869 6.54604 6.67005 6.68937 7.24420 7.27483 7.52029 8.83945 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018394 B = 0.004084 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.882064 B = 6853.812148 C = 7641.897565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.571 6.571 4 N -0.710 5.710 5 C 0.142 3.858 6 H 0.145 0.855 7 C -0.122 4.122 8 C -0.083 4.083 9 C -0.146 4.146 10 C -0.151 4.151 11 C 0.486 3.514 12 O -0.571 6.571 13 N -0.610 5.610 14 C 0.104 3.896 15 C -0.132 4.132 16 C -0.122 4.122 17 C 0.012 3.988 18 H 0.015 0.985 19 C -0.527 4.527 20 H 0.026 0.974 21 C 0.011 3.989 22 N -0.950 5.950 23 Si 0.960 3.040 24 H -0.254 1.254 25 H -0.301 1.301 26 H -0.249 1.249 27 C 0.141 3.859 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.422 0.578 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.039 0.961 47 H 0.267 0.733 48 H 0.045 0.955 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.229 -12.284 -25.239 30.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.291 3.709 3 O -0.449 6.449 4 N -0.365 5.365 5 C 0.033 3.967 6 H 0.163 0.837 7 C -0.160 4.160 8 C -0.102 4.102 9 C -0.204 4.204 10 C -0.208 4.208 11 C 0.274 3.726 12 O -0.449 6.449 13 N -0.343 5.343 14 C -0.017 4.017 15 C -0.170 4.170 16 C -0.160 4.160 17 C -0.007 4.007 18 H 0.033 0.967 19 C -0.565 4.565 20 H 0.045 0.955 21 C -0.186 4.186 22 N -0.590 5.590 23 Si 0.786 3.214 24 H -0.179 1.179 25 H -0.229 1.229 26 H -0.173 1.173 27 C 0.018 3.982 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.138 0.862 31 H 0.260 0.740 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.137 0.863 43 H 0.126 0.874 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.119 -11.131 -24.788 29.359 hybrid contribution 0.202 -0.037 1.328 1.343 sum -10.917 -11.168 -23.460 28.183 Atomic orbital electron populations 1.21887 0.88814 1.05440 1.06132 1.21455 0.91988 0.83276 0.74190 1.90708 1.71696 1.33354 1.49123 1.45600 1.05065 1.09559 1.76262 1.21013 0.82446 1.01863 0.91374 0.83731 1.21963 1.01412 0.99968 0.92705 1.21006 1.00787 0.95773 0.92612 1.21815 1.01538 0.99446 0.97568 1.21954 1.01041 0.95056 1.02754 1.21848 0.81280 0.82470 0.87001 1.90705 1.56805 1.38207 1.59164 1.48356 1.12979 1.45170 1.27842 1.22114 0.94192 0.90859 0.94551 1.22003 1.01223 0.97802 0.95966 1.21861 0.98696 0.98270 0.97128 1.19296 0.94528 0.94185 0.92731 0.96723 1.21242 1.36631 0.93395 1.05276 0.95519 1.25947 0.93995 1.04350 0.94298 1.70067 1.39295 1.38186 1.11477 0.85681 0.80319 0.79204 0.76201 1.17929 1.22939 1.17324 1.21198 0.96988 0.94769 0.85227 0.88247 0.90310 0.86162 0.74010 0.92795 0.90196 0.90924 0.92498 0.91185 0.94399 0.91536 0.91486 0.91860 0.89984 0.86301 0.87354 0.91833 0.92026 0.94253 0.92415 0.93615 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.32 71.24 0.74 -1.84 16 2 C 0.50 13.05 6.70 87.66 0.59 13.64 16 3 O -0.57 -21.82 12.95 19.42 0.25 -21.57 16 4 N -0.71 -13.81 4.47 -446.11 -1.99 -15.80 16 5 C 0.14 3.10 2.02 44.25 0.09 3.19 16 6 H 0.15 2.01 4.86 -2.39 -0.01 2.00 16 7 C -0.12 -2.52 3.77 30.59 0.12 -2.40 16 8 C -0.08 -1.11 2.85 -10.80 -0.03 -1.14 16 9 C -0.15 -2.01 9.19 71.98 0.66 -1.35 16 10 C -0.15 -1.25 8.97 71.98 0.65 -0.60 16 11 C 0.49 17.04 6.69 87.66 0.59 17.63 16 12 O -0.57 -26.41 13.09 19.42 0.25 -26.15 16 13 N -0.61 -20.93 2.97 -819.07 -2.44 -23.37 16 14 C 0.10 2.41 5.60 86.36 0.48 2.90 16 15 C -0.13 -3.40 6.08 30.67 0.19 -3.22 16 16 C -0.12 -4.68 4.66 30.62 0.14 -4.54 16 17 C 0.01 0.58 1.84 -11.49 -0.02 0.56 16 18 H 0.01 0.73 7.21 -2.38 -0.02 0.72 16 19 C -0.53 -31.18 9.15 25.60 0.23 -30.95 16 20 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 21 C 0.01 0.66 5.45 84.65 0.46 1.12 16 22 N -0.95 -60.68 13.96 21.45 0.30 -60.39 16 23 Si 0.96 44.83 24.38 68.60 1.67 46.50 16 24 H -0.25 -10.81 6.85 99.48 0.68 -10.13 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 27 C 0.14 6.32 5.65 86.34 0.49 6.81 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.43 8.12 -2.39 -0.02 1.41 16 30 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.42 4.43 8.83 -92.71 -0.82 3.61 16 32 H 0.05 1.59 6.09 -2.38 -0.01 1.58 16 33 H 0.08 1.54 7.17 -2.39 -0.02 1.53 16 34 H 0.07 0.95 7.53 -2.38 -0.02 0.94 16 35 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.41 6.53 -2.39 -0.02 0.39 16 39 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.12 1.71 5.16 -2.39 -0.01 1.70 16 43 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.04 1.59 3.23 -2.38 -0.01 1.58 16 47 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 48 H 0.05 2.36 7.01 -2.39 -0.02 2.34 16 49 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -88.31 366.99 3.46 -84.85 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.04 Total: 16.13 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.36 Total: -0.20 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -4.13 Total: -99.55 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: 0.51 Total: -47.72 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.67 Total: 46.50 kcal Total: -88.31 3.46 -84.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904752.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.634 kcal (2) G-P(sol) polarization free energy of solvation -88.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds