Wall clock time and date at job start Fri Apr 10 2020 22:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21277 * 119.99760 * 2 1 4 4 N 1.34774 * 119.99897 * 180.02562 * 2 1 3 5 5 C 1.46496 * 119.99765 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47165 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47350 * 299.99878 * 5 4 2 8 8 C 1.52995 * 109.47069 * 297.66631 * 7 5 4 9 9 C 1.53001 * 109.47147 * 175.13608 * 8 7 5 10 10 C 1.52999 * 109.47193 * 295.13709 * 8 7 5 11 11 C 1.50705 * 109.47423 * 60.00123 * 5 4 2 12 12 O 1.21285 * 119.99170 * 339.99641 * 11 5 4 13 13 N 1.34773 * 120.00572 * 159.99907 * 11 5 4 14 14 C 1.46928 * 120.62707 * 359.97438 * 13 11 5 15 15 C 1.53195 * 108.77307 * 126.41621 * 14 13 11 16 16 C 1.53035 * 109.33904 * 54.61720 * 15 14 13 17 17 C 1.53038 * 109.54263 * 298.68292 * 16 15 14 18 18 H 1.09001 * 109.49364 * 301.35032 * 17 16 15 19 19 C 1.50702 * 109.49920 * 181.28428 * 17 16 15 20 20 H 1.07995 * 119.99566 * 244.77921 * 19 17 16 21 21 C 1.37873 * 119.99669 * 64.51024 * 19 17 16 22 22 N 1.31514 * 120.00085 * 355.77872 * 21 19 17 23 23 Si 1.86804 * 119.99703 * 175.78080 * 21 19 17 24 24 H 1.48490 * 109.46964 * 94.99727 * 23 21 19 25 25 H 1.48506 * 109.46832 * 214.99430 * 23 21 19 26 26 H 1.48495 * 109.47024 * 334.99426 * 23 21 19 27 27 C 1.46924 * 120.63317 * 180.02562 * 13 11 5 28 28 H 1.09005 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47265 * 300.00200 * 1 2 3 30 30 H 1.08998 * 109.47418 * 60.00175 * 1 2 3 31 31 H 0.97005 * 120.00189 * 359.97438 * 4 2 1 32 32 H 1.08994 * 109.47105 * 57.67110 * 7 5 4 33 33 H 1.09006 * 109.47066 * 177.66658 * 7 5 4 34 34 H 1.09003 * 109.46789 * 55.13550 * 8 7 5 35 35 H 1.09004 * 109.46951 * 64.96234 * 9 8 7 36 36 H 1.09004 * 109.46909 * 184.96208 * 9 8 7 37 37 H 1.09000 * 109.46699 * 304.95916 * 9 8 7 38 38 H 1.09002 * 109.47458 * 59.99961 * 10 8 7 39 39 H 1.09000 * 109.47282 * 179.97438 * 10 8 7 40 40 H 1.09000 * 109.47198 * 300.00155 * 10 8 7 41 41 H 1.08998 * 109.58450 * 246.20302 * 14 13 11 42 42 H 1.08998 * 109.58794 * 6.62792 * 14 13 11 43 43 H 1.09001 * 109.49420 * 174.58453 * 15 14 13 44 44 H 1.09000 * 109.49618 * 294.67824 * 15 14 13 45 45 H 1.09005 * 109.48284 * 178.64589 * 16 15 14 46 46 H 1.09000 * 109.43294 * 58.69007 * 16 15 14 47 47 H 0.97008 * 119.99966 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58692 * 113.79786 * 27 13 11 49 49 H 1.09000 * 109.69930 * 353.44019 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 1 4.0092 -2.1949 -0.0010 7 6 4.1554 -0.4456 -1.2504 8 6 3.6934 -1.1997 -2.4989 9 6 4.0985 -0.4145 -3.7480 10 6 4.3480 -2.5823 -2.5310 11 6 4.1487 -0.4570 1.2294 12 8 3.4204 0.3043 1.8302 13 7 5.4075 -0.6679 1.6621 14 6 6.3013 -1.5877 0.9451 15 6 7.6019 -0.8506 0.6106 16 6 8.1982 -0.2672 1.8935 17 6 7.2170 0.7362 2.5040 18 1 7.0113 1.5280 1.7837 19 6 7.8183 1.3334 3.7501 20 1 7.3617 1.1499 4.7114 21 6 8.9546 2.1094 3.6634 22 7 9.5611 2.2605 2.5063 23 14 9.6327 2.9463 5.1897 24 1 10.6888 2.0946 5.7932 25 1 10.2110 4.2623 4.8170 26 1 8.5373 3.1472 6.1720 27 6 5.9118 0.0166 2.8603 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6958 -2.0073 -0.0005 32 1 3.7583 0.5692 -1.2712 33 1 5.2446 -0.4093 -1.2301 34 1 2.6094 -1.3115 -2.4755 35 1 5.1857 -0.3785 -3.8179 36 1 3.6935 -0.9055 -4.6329 37 1 3.7047 0.5998 -3.6830 38 1 4.0595 -3.1417 -1.6411 39 1 4.0186 -3.1197 -3.4202 40 1 5.4321 -2.4706 -2.5543 41 1 6.5212 -2.4491 1.5757 42 1 5.8219 -1.9193 0.0241 43 1 8.3108 -1.5480 0.1642 44 1 7.3926 -0.0442 -0.0923 45 1 9.1363 0.2373 1.6618 46 1 8.3848 -1.0715 2.6051 47 1 10.3608 2.8063 2.4454 48 1 6.1001 -0.7143 3.6467 49 1 5.1762 0.7433 3.2053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:48 Heat of formation + Delta-G solvation = -89.967386 kcal Electronic energy + Delta-G solvation = -27946.822820 eV Core-core repulsion = 24294.179094 eV Total energy + Delta-G solvation = -3652.643726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.53344 -38.71141 -36.74222 -36.48725 -33.93831 -33.41630 -31.38294 -30.88842 -30.00869 -28.23709 -27.30540 -25.32287 -24.95330 -23.44106 -21.65861 -21.08884 -19.89616 -19.52114 -18.13070 -17.58665 -16.55605 -16.14045 -15.93478 -15.44175 -14.73286 -14.64939 -14.55426 -14.40268 -13.89233 -13.58312 -13.41881 -13.31942 -13.03329 -12.71959 -12.69916 -12.46976 -12.29062 -12.16911 -12.04367 -11.95618 -11.79140 -11.69676 -10.97096 -10.87612 -10.85626 -10.81655 -10.70722 -10.66113 -10.27865 -9.93373 -9.84249 -9.60882 -9.39493 -9.36592 -8.86861 -8.56858 -8.33712 -7.80270 -5.99022 -4.04985 2.86299 3.10311 3.26438 3.31798 3.39193 3.44094 3.73818 4.45841 4.65087 4.72442 4.81557 4.95977 4.98094 5.05986 5.14150 5.30040 5.33235 5.36511 5.41948 5.52274 5.60473 5.64062 5.67420 5.75191 5.77794 5.79671 5.84660 5.96945 6.10863 6.14252 6.24687 6.35299 6.37976 6.42767 6.51011 6.53937 6.71002 6.86050 7.03916 7.20458 7.36934 7.60730 7.72121 7.96742 8.08267 8.09773 8.41382 8.49075 8.79910 8.99238 9.59617 11.07234 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017155 B = 0.004035 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.786049 B = 6937.116294 C = 7764.808317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.512 3.488 3 O -0.509 6.509 4 N -0.722 5.722 5 C 0.134 3.866 6 H 0.104 0.896 7 C -0.130 4.130 8 C -0.090 4.090 9 C -0.147 4.147 10 C -0.151 4.151 11 C 0.497 3.503 12 O -0.521 6.521 13 N -0.604 5.604 14 C 0.107 3.893 15 C -0.135 4.135 16 C -0.109 4.109 17 C 0.040 3.960 18 H 0.031 0.969 19 C -0.514 4.514 20 H 0.056 0.944 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.891 3.109 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.119 3.881 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.399 0.601 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.035 0.965 47 H 0.260 0.740 48 H 0.052 0.948 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 -13.318 -11.515 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.298 3.702 3 O -0.382 6.382 4 N -0.376 5.376 5 C 0.025 3.975 6 H 0.121 0.879 7 C -0.168 4.168 8 C -0.109 4.109 9 C -0.204 4.204 10 C -0.208 4.208 11 C 0.282 3.718 12 O -0.396 6.396 13 N -0.338 5.338 14 C -0.017 4.017 15 C -0.173 4.173 16 C -0.147 4.147 17 C 0.021 3.979 18 H 0.049 0.951 19 C -0.552 4.552 20 H 0.074 0.926 21 C -0.138 4.138 22 N -0.527 5.527 23 Si 0.719 3.281 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.002 4.002 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.915 -12.009 -11.256 20.921 hybrid contribution 0.386 -0.080 0.829 0.918 sum -12.528 -12.088 -10.427 20.293 Atomic orbital electron populations 1.21814 0.92429 1.03527 1.04963 1.20579 0.90079 0.83740 0.75770 1.90752 1.69981 1.31087 1.46344 1.45751 1.05549 1.08851 1.77462 1.20935 0.81465 1.00643 0.94431 0.87872 1.22047 1.01695 1.01559 0.91540 1.21044 1.00277 0.94987 0.94563 1.21819 1.01672 1.00121 0.96782 1.21943 1.01162 0.96409 1.01329 1.20690 0.82175 0.83003 0.85919 1.90703 1.55705 1.35812 1.57428 1.48264 1.11519 1.44855 1.29194 1.21790 0.91902 0.92291 0.95675 1.22004 0.95177 0.99323 1.00787 1.21613 1.02399 0.97856 0.92865 1.18977 0.88989 0.93275 0.96627 0.95075 1.21076 1.10470 1.30572 0.93114 0.92558 1.24930 0.96616 0.96254 0.95957 1.69898 1.19451 1.39499 1.23855 0.86588 0.79076 0.79061 0.83348 1.20820 1.21188 1.19812 1.21953 0.98229 0.95620 0.84360 0.91127 0.88962 0.89246 0.76734 0.88947 0.90326 0.91301 0.92481 0.92936 0.92623 0.92830 0.92785 0.92267 0.92056 0.91213 0.92536 0.92321 0.89059 0.94624 0.93038 0.92994 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.39 36.00 0.37 -1.16 16 2 C 0.51 7.19 6.70 -10.99 -0.07 7.12 16 3 O -0.51 -9.99 12.97 -17.93 -0.23 -10.22 16 4 N -0.72 -8.29 4.45 -54.93 -0.24 -8.53 16 5 C 0.13 1.78 1.98 -69.08 -0.14 1.64 16 6 H 0.10 1.07 5.11 -51.93 -0.27 0.80 16 7 C -0.13 -1.73 3.70 -26.73 -0.10 -1.83 16 8 C -0.09 -0.89 2.85 -90.62 -0.26 -1.14 16 9 C -0.15 -1.43 9.19 37.16 0.34 -1.09 16 10 C -0.15 -1.20 8.95 37.16 0.33 -0.87 16 11 C 0.50 9.35 6.69 -10.98 -0.07 9.27 16 12 O -0.52 -12.02 13.10 -17.94 -0.23 -12.26 16 13 N -0.60 -11.41 2.97 -172.74 -0.51 -11.92 16 14 C 0.11 1.63 5.78 -3.71 -0.02 1.61 16 15 C -0.13 -2.38 6.08 -26.61 -0.16 -2.54 16 16 C -0.11 -2.46 5.00 -26.69 -0.13 -2.59 16 17 C 0.04 1.02 2.21 -91.63 -0.20 0.82 16 18 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.51 -14.23 8.51 -34.44 -0.29 -14.52 16 20 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 21 C 0.06 1.78 5.35 -17.82 -0.10 1.68 16 22 N -0.89 -25.41 11.49 55.43 0.64 -24.77 16 23 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.12 2.68 5.66 -3.69 -0.02 2.66 16 28 H 0.07 0.42 7.91 -51.93 -0.41 0.01 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.40 2.97 8.67 -40.82 -0.35 2.61 16 32 H 0.09 1.56 6.11 -51.93 -0.32 1.24 16 33 H 0.08 1.09 6.92 -51.93 -0.36 0.73 16 34 H 0.07 0.66 7.53 -51.93 -0.39 0.27 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.38 6.51 -51.93 -0.34 0.04 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.84 4.80 -51.93 -0.25 0.59 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 2.33 6.25 -51.93 -0.32 2.01 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.08 1.92 7.01 -51.93 -0.36 1.56 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -34.63 373.61 -8.91 -43.54 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.41 Total: 2.98 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.52 Total: -0.95 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.12 Total: -45.23 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.47 Total: -22.48 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.63 -8.91 -43.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.429 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds