Wall clock time and date at job start Fri Apr 10 2020 22:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21277 * 119.99760 * 2 1 4 4 N 1.34774 * 119.99897 * 180.02562 * 2 1 3 5 5 C 1.46496 * 119.99765 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.47165 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47350 * 299.99878 * 5 4 2 8 8 C 1.52995 * 109.47069 * 297.66631 * 7 5 4 9 9 C 1.53001 * 109.47147 * 175.13608 * 8 7 5 10 10 C 1.52999 * 109.47193 * 295.13709 * 8 7 5 11 11 C 1.50705 * 109.47423 * 60.00123 * 5 4 2 12 12 O 1.21285 * 119.99170 * 339.99641 * 11 5 4 13 13 N 1.34773 * 120.00572 * 159.99907 * 11 5 4 14 14 C 1.46928 * 120.62707 * 359.97438 * 13 11 5 15 15 C 1.53195 * 108.77307 * 126.41621 * 14 13 11 16 16 C 1.53035 * 109.33904 * 54.61720 * 15 14 13 17 17 C 1.53038 * 109.54263 * 298.68292 * 16 15 14 18 18 H 1.09001 * 109.49364 * 301.35032 * 17 16 15 19 19 C 1.50702 * 109.49920 * 181.28428 * 17 16 15 20 20 H 1.07995 * 119.99566 * 244.77921 * 19 17 16 21 21 C 1.37873 * 119.99669 * 64.51024 * 19 17 16 22 22 N 1.31514 * 120.00085 * 355.77872 * 21 19 17 23 23 Si 1.86804 * 119.99703 * 175.78080 * 21 19 17 24 24 H 1.48490 * 109.46964 * 94.99727 * 23 21 19 25 25 H 1.48506 * 109.46832 * 214.99430 * 23 21 19 26 26 H 1.48495 * 109.47024 * 334.99426 * 23 21 19 27 27 C 1.46924 * 120.63317 * 180.02562 * 13 11 5 28 28 H 1.09005 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47265 * 300.00200 * 1 2 3 30 30 H 1.08998 * 109.47418 * 60.00175 * 1 2 3 31 31 H 0.97005 * 120.00189 * 359.97438 * 4 2 1 32 32 H 1.08994 * 109.47105 * 57.67110 * 7 5 4 33 33 H 1.09006 * 109.47066 * 177.66658 * 7 5 4 34 34 H 1.09003 * 109.46789 * 55.13550 * 8 7 5 35 35 H 1.09004 * 109.46951 * 64.96234 * 9 8 7 36 36 H 1.09004 * 109.46909 * 184.96208 * 9 8 7 37 37 H 1.09000 * 109.46699 * 304.95916 * 9 8 7 38 38 H 1.09002 * 109.47458 * 59.99961 * 10 8 7 39 39 H 1.09000 * 109.47282 * 179.97438 * 10 8 7 40 40 H 1.09000 * 109.47198 * 300.00155 * 10 8 7 41 41 H 1.08998 * 109.58450 * 246.20302 * 14 13 11 42 42 H 1.08998 * 109.58794 * 6.62792 * 14 13 11 43 43 H 1.09001 * 109.49420 * 174.58453 * 15 14 13 44 44 H 1.09000 * 109.49618 * 294.67824 * 15 14 13 45 45 H 1.09005 * 109.48284 * 178.64589 * 16 15 14 46 46 H 1.09000 * 109.43294 * 58.69007 * 16 15 14 47 47 H 0.97008 * 119.99966 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58692 * 113.79786 * 27 13 11 49 49 H 1.09000 * 109.69930 * 353.44019 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 1 4.0092 -2.1949 -0.0010 7 6 4.1554 -0.4456 -1.2504 8 6 3.6934 -1.1997 -2.4989 9 6 4.0985 -0.4145 -3.7480 10 6 4.3480 -2.5823 -2.5310 11 6 4.1487 -0.4570 1.2294 12 8 3.4204 0.3043 1.8302 13 7 5.4075 -0.6679 1.6621 14 6 6.3013 -1.5877 0.9451 15 6 7.6019 -0.8506 0.6106 16 6 8.1982 -0.2672 1.8935 17 6 7.2170 0.7362 2.5040 18 1 7.0113 1.5280 1.7837 19 6 7.8183 1.3334 3.7501 20 1 7.3617 1.1499 4.7114 21 6 8.9546 2.1094 3.6634 22 7 9.5611 2.2605 2.5063 23 14 9.6327 2.9463 5.1897 24 1 10.6888 2.0946 5.7932 25 1 10.2110 4.2623 4.8170 26 1 8.5373 3.1472 6.1720 27 6 5.9118 0.0166 2.8603 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6958 -2.0073 -0.0005 32 1 3.7583 0.5692 -1.2712 33 1 5.2446 -0.4093 -1.2301 34 1 2.6094 -1.3115 -2.4755 35 1 5.1857 -0.3785 -3.8179 36 1 3.6935 -0.9055 -4.6329 37 1 3.7047 0.5998 -3.6830 38 1 4.0595 -3.1417 -1.6411 39 1 4.0186 -3.1197 -3.4202 40 1 5.4321 -2.4706 -2.5543 41 1 6.5212 -2.4491 1.5757 42 1 5.8219 -1.9193 0.0241 43 1 8.3108 -1.5480 0.1642 44 1 7.3926 -0.0442 -0.0923 45 1 9.1363 0.2373 1.6618 46 1 8.3848 -1.0715 2.6051 47 1 10.3608 2.8063 2.4454 48 1 6.1001 -0.7143 3.6467 49 1 5.1762 0.7433 3.2053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:48 Heat of formation + Delta-G solvation = -112.789959 kcal Electronic energy + Delta-G solvation = -27947.812481 eV Core-core repulsion = 24294.179094 eV Total energy + Delta-G solvation = -3653.633387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80915 -40.07934 -38.20439 -37.66676 -35.33542 -34.98624 -33.11740 -32.25391 -31.41026 -29.21564 -27.96631 -27.13403 -26.50791 -24.75853 -23.34047 -22.27711 -21.24919 -20.65664 -19.65630 -18.76441 -18.37549 -17.62689 -17.17909 -16.69945 -16.40940 -15.97830 -15.85866 -15.49911 -15.12184 -15.03558 -14.74954 -14.59435 -14.47844 -14.33094 -13.77381 -13.63306 -13.55485 -13.26309 -13.13769 -12.99788 -12.89805 -12.78292 -12.70955 -12.61944 -12.60290 -11.96678 -11.85421 -11.74687 -11.69498 -11.61272 -11.47428 -11.29068 -10.99442 -10.85903 -10.52808 -10.42853 -9.87191 -9.43667 -8.13541 -6.28025 1.37275 1.39540 1.50130 1.65555 1.77871 2.14709 2.40256 2.49655 3.13705 3.49656 3.76914 3.90238 4.00447 4.12195 4.13075 4.17056 4.24982 4.36027 4.47408 4.52615 4.56777 4.59864 4.68018 4.69778 4.77512 4.82740 4.86440 4.90713 4.96247 5.04707 5.09129 5.11064 5.12556 5.18821 5.27058 5.33760 5.44206 5.49332 5.51881 5.57070 5.59354 5.60800 5.91607 6.11369 6.32215 6.60033 6.71420 6.81898 7.28905 7.39890 7.54736 8.91038 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017155 B = 0.004035 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.786049 B = 6937.116294 C = 7764.808317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.500 3.500 3 O -0.575 6.575 4 N -0.706 5.706 5 C 0.144 3.856 6 H 0.148 0.852 7 C -0.124 4.124 8 C -0.081 4.081 9 C -0.148 4.148 10 C -0.150 4.150 11 C 0.485 3.515 12 O -0.572 6.572 13 N -0.608 5.608 14 C 0.107 3.893 15 C -0.127 4.127 16 C -0.101 4.101 17 C 0.042 3.958 18 H -0.022 1.022 19 C -0.540 4.540 20 H 0.051 0.949 21 C 0.016 3.984 22 N -0.913 5.913 23 Si 0.955 3.045 24 H -0.268 1.268 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.133 3.867 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.423 0.577 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.038 0.962 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.261 0.739 48 H 0.063 0.937 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.868 -17.104 -12.578 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.289 3.711 3 O -0.453 6.453 4 N -0.361 5.361 5 C 0.035 3.965 6 H 0.166 0.834 7 C -0.163 4.163 8 C -0.100 4.100 9 C -0.205 4.205 10 C -0.207 4.207 11 C 0.272 3.728 12 O -0.450 6.450 13 N -0.341 5.341 14 C -0.014 4.014 15 C -0.166 4.166 16 C -0.140 4.140 17 C 0.023 3.977 18 H -0.003 1.003 19 C -0.578 4.578 20 H 0.070 0.930 21 C -0.183 4.183 22 N -0.552 5.552 23 Si 0.781 3.219 24 H -0.194 1.194 25 H -0.209 1.209 26 H -0.198 1.198 27 C 0.010 3.990 28 H 0.131 0.869 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.113 0.887 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.699 -15.878 -12.343 24.334 hybrid contribution 0.620 1.169 1.148 1.752 sum -13.079 -14.709 -11.195 22.644 Atomic orbital electron populations 1.21821 0.88550 1.06353 1.05118 1.21528 0.92080 0.83288 0.74199 1.90741 1.71674 1.33564 1.49275 1.45646 1.04858 1.09537 1.76064 1.20946 0.82604 1.01830 0.91088 0.83438 1.21969 1.00926 0.99957 0.93440 1.21001 1.00878 0.95828 0.92271 1.21836 1.01527 0.99333 0.97831 1.21948 1.00948 0.94759 1.03022 1.21824 0.81577 0.82480 0.86886 1.90680 1.57124 1.38010 1.59232 1.48354 1.12417 1.45001 1.28362 1.22070 0.90085 0.91632 0.97649 1.21915 0.97253 0.99658 0.97729 1.21390 1.00200 0.97015 0.95367 1.18865 0.91153 0.92926 0.94730 1.00333 1.21442 1.10924 1.31591 0.93841 0.93041 1.25708 0.96886 0.96759 0.98918 1.70035 1.19710 1.39855 1.25639 0.85588 0.78507 0.78088 0.79764 1.19355 1.20927 1.19758 1.21474 0.95808 0.95268 0.86464 0.86949 0.89740 0.88064 0.73821 0.93346 0.91188 0.90525 0.92760 0.90850 0.94695 0.91141 0.91146 0.92317 0.89263 0.87048 0.88727 0.94292 0.92489 0.93914 0.92948 0.91832 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 10.39 71.24 0.74 -1.88 16 2 C 0.50 13.84 6.70 87.66 0.59 14.43 16 3 O -0.57 -23.77 12.97 19.44 0.25 -23.52 16 4 N -0.71 -14.58 4.45 -446.10 -1.99 -16.56 16 5 C 0.14 3.54 1.98 44.25 0.09 3.62 16 6 H 0.15 2.30 5.11 -2.38 -0.01 2.29 16 7 C -0.12 -3.20 3.70 30.59 0.11 -3.09 16 8 C -0.08 -1.39 2.85 -10.80 -0.03 -1.42 16 9 C -0.15 -2.68 9.19 71.98 0.66 -2.02 16 10 C -0.15 -1.66 8.95 71.98 0.64 -1.02 16 11 C 0.48 18.33 6.69 87.66 0.59 18.92 16 12 O -0.57 -27.63 13.10 19.42 0.25 -27.38 16 13 N -0.61 -22.89 2.97 -818.82 -2.43 -25.32 16 14 C 0.11 2.95 5.78 86.36 0.50 3.45 16 15 C -0.13 -4.33 6.08 30.67 0.19 -4.15 16 16 C -0.10 -4.65 5.00 30.62 0.15 -4.50 16 17 C 0.04 2.26 2.21 -11.45 -0.03 2.23 16 18 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 19 C -0.54 -31.20 8.51 25.60 0.22 -30.98 16 20 H 0.05 2.94 7.75 -2.91 -0.02 2.92 16 21 C 0.02 0.94 5.35 84.65 0.45 1.40 16 22 N -0.91 -54.15 11.49 21.45 0.25 -53.91 16 23 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 26 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 27 C 0.13 6.21 5.66 86.38 0.49 6.69 16 28 H 0.11 0.87 7.91 -2.38 -0.02 0.85 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.42 4.50 8.67 -92.70 -0.80 3.69 16 32 H 0.05 1.72 6.11 -2.39 -0.01 1.70 16 33 H 0.07 1.89 6.92 -2.38 -0.02 1.88 16 34 H 0.08 1.21 7.53 -2.39 -0.02 1.19 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.56 6.51 -2.39 -0.02 0.54 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 42 H 0.11 2.17 4.80 -2.39 -0.01 2.16 16 43 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 3.00 6.25 -2.38 -0.01 2.99 16 46 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 48 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.04 2.22 7.01 -2.39 -0.02 2.20 16 Total: -1.00 -85.02 373.61 3.86 -81.17 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.13 Total: 16.65 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 5.36 Total: 1.70 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -4.17 Total: -95.79 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: 0.51 Total: -50.90 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -85.02 3.86 -81.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.622 kcal (2) G-P(sol) polarization free energy of solvation -85.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds