Wall clock time and date at job start Fri Apr 10 2020 22:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47408 * 2 1 4 4 C 1.52999 * 109.47067 * 239.99611 * 2 1 3 5 5 C 1.53007 * 109.46949 * 119.99935 * 2 1 3 6 6 C 1.50703 * 109.47018 * 59.99768 * 5 2 1 7 7 O 1.21278 * 119.99986 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99899 * 180.02562 * 6 5 2 9 9 C 1.46501 * 119.99895 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47150 * 179.97438 * 9 8 6 11 11 O 1.21281 * 120.00130 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99750 * 179.97438 * 10 9 8 13 13 C 1.46919 * 120.63395 * 0.02562 * 12 10 9 14 14 C 1.53195 * 108.89273 * 126.29715 * 13 12 10 15 15 C 1.53346 * 109.14901 * 54.57640 * 14 13 12 16 16 C 1.53034 * 109.61010 * 298.71225 * 15 14 13 17 17 H 1.08994 * 109.50232 * 301.42239 * 16 15 14 18 18 C 1.50707 * 109.50154 * 181.32368 * 16 15 14 19 19 H 1.08007 * 119.99368 * 0.16385 * 18 16 15 20 20 C 1.37876 * 120.00294 * 180.16159 * 18 16 15 21 21 N 1.31519 * 119.99964 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 119.99777 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47186 * 60.00495 * 22 20 18 24 24 H 1.48508 * 109.46860 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47592 * 299.99905 * 22 20 18 26 26 C 1.46933 * 120.62602 * 179.97438 * 12 10 9 27 27 H 1.08995 * 109.47266 * 300.00366 * 1 2 3 28 28 H 1.09004 * 109.46324 * 60.00017 * 1 2 3 29 29 H 1.08998 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47444 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47364 * 299.99346 * 3 2 1 32 32 H 1.09003 * 109.47495 * 59.99647 * 3 2 1 33 33 H 1.08998 * 109.47586 * 300.00353 * 4 2 1 34 34 H 1.08992 * 109.47072 * 60.00523 * 4 2 1 35 35 H 1.09005 * 109.47161 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.46892 * 300.00400 * 5 2 1 37 37 H 1.08992 * 109.47329 * 179.97438 * 5 2 1 38 38 H 0.96998 * 120.00350 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.47493 * 60.00012 * 9 8 6 40 40 H 1.09001 * 109.47445 * 299.99877 * 9 8 6 41 41 H 1.09002 * 109.58751 * 246.15665 * 13 12 10 42 42 H 1.08996 * 109.58750 * 6.43850 * 13 12 10 43 43 H 1.08997 * 109.49914 * 174.65962 * 14 13 12 44 44 H 1.09002 * 109.49585 * 294.75599 * 14 13 12 45 45 H 1.08999 * 109.41979 * 178.67448 * 15 14 13 46 46 H 1.09001 * 109.42242 * 58.75065 * 15 14 13 47 47 H 0.96995 * 119.99653 * 179.97438 * 21 20 18 48 48 H 1.08994 * 109.58580 * 353.42544 * 26 12 10 49 49 H 1.09006 * 109.57831 * 113.70037 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5376 -2.1421 1.2493 7 8 0.8407 -2.5389 0.3395 8 7 1.8627 -2.9718 2.2604 9 6 1.3747 -4.3531 2.2601 10 6 1.8769 -5.0635 3.4907 11 8 2.5741 -4.4742 4.2890 12 7 1.5511 -6.3539 3.7039 13 6 0.7078 -7.0813 2.7457 14 6 1.4278 -8.3673 2.3278 15 6 1.7941 -9.1692 3.5825 16 6 2.7398 -8.3462 4.4601 17 1 3.6355 -8.0938 3.8927 18 6 3.1239 -9.1491 5.6764 19 1 2.7347 -10.1478 5.8091 20 6 3.9720 -8.6086 6.6196 21 7 4.4455 -7.3923 6.4582 22 14 4.4485 -9.6041 8.1267 23 1 5.1339 -10.8505 7.7002 24 1 5.3635 -8.8036 8.9795 25 1 3.2276 -9.9496 8.8981 26 6 2.0336 -7.0601 4.8987 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1391 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -0.2074 2.1393 37 1 3.1299 -0.7217 1.2491 38 1 2.4197 -2.6544 2.9883 39 1 1.7388 -4.8670 1.3704 40 1 0.2847 -4.3535 2.2594 41 1 -0.2446 -7.3312 3.2133 42 1 0.5319 -6.4594 1.8681 43 1 0.7720 -8.9610 1.6911 44 1 2.3358 -8.1144 1.7803 45 1 2.2858 -10.0967 3.2892 46 1 0.8878 -9.4001 4.1425 47 1 5.0418 -7.0120 7.1219 48 1 2.7343 -6.4249 5.4405 49 1 1.1897 -7.3059 5.5434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597910949.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:51 Heat of formation + Delta-G solvation = -94.345542 kcal Electronic energy + Delta-G solvation = -26530.382990 eV Core-core repulsion = 22877.549412 eV Total energy + Delta-G solvation = -3652.833577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.36487 -39.41932 -37.07840 -36.50897 -34.30522 -33.46604 -31.86709 -30.11853 -29.36259 -27.35749 -27.27503 -26.96821 -25.07465 -24.08478 -21.89678 -20.76405 -20.01738 -19.17682 -18.31743 -17.38035 -16.42208 -16.26136 -15.87113 -15.74051 -14.97293 -14.88481 -14.56944 -14.44305 -14.34598 -13.95284 -13.76205 -13.40721 -12.93864 -12.83300 -12.67445 -12.48511 -12.28064 -12.24137 -12.02165 -11.90399 -11.87607 -11.34423 -11.22061 -11.04223 -10.95355 -10.88784 -10.78519 -10.57342 -10.44948 -10.28580 -9.95754 -9.55714 -9.46626 -9.17697 -9.07654 -8.96736 -8.48244 -7.86584 -6.04521 -4.13288 2.60052 3.01104 3.05315 3.29097 3.35028 3.36293 3.72025 4.39005 4.49775 4.65742 4.68055 4.77592 5.07668 5.22705 5.26298 5.29976 5.34564 5.39320 5.41267 5.43861 5.48357 5.49856 5.62537 5.62983 5.73847 5.78784 5.92375 5.96354 5.98248 6.09436 6.10670 6.24395 6.25655 6.37526 6.52450 6.57220 6.60542 6.79280 6.91617 7.05714 7.16910 7.52681 7.57246 7.80767 7.92953 8.10837 8.24310 8.32751 8.66002 8.90588 9.52538 11.00780 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.002757 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.864258 B =10155.252547 C =10952.424343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.154 4.154 5 C -0.133 4.133 6 C 0.515 3.485 7 O -0.538 6.538 8 N -0.716 5.716 9 C 0.100 3.900 10 C 0.499 3.501 11 O -0.537 6.537 12 N -0.599 5.599 13 C 0.105 3.895 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.112 3.888 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.412 0.588 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.264 0.736 48 H 0.124 0.876 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 12.223 -12.118 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.051 4.051 3 C -0.200 4.200 4 C -0.211 4.211 5 C -0.173 4.173 6 C 0.303 3.697 7 O -0.417 6.417 8 N -0.371 5.371 9 C -0.028 4.028 10 C 0.285 3.715 11 O -0.415 6.415 12 N -0.332 5.332 13 C -0.019 4.019 14 C -0.172 4.172 15 C -0.149 4.149 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.008 4.008 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.250 0.750 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.141 0.859 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.120 12.369 -12.216 18.786 hybrid contribution 0.556 -0.461 1.216 1.414 sum -6.564 11.908 -11.000 17.490 Atomic orbital electron populations 1.22109 0.94118 1.04138 1.00681 1.20265 0.96386 0.94428 0.94064 1.21901 1.00916 0.95347 1.01801 1.22111 1.00022 1.02913 0.96039 1.21786 1.02616 0.92338 1.00529 1.20666 0.80095 0.87714 0.81253 1.90560 1.38185 1.77405 1.35502 1.45864 1.53890 1.11211 1.26127 1.21138 1.00378 0.83238 0.98010 1.20319 0.81255 0.82772 0.87140 1.90699 1.38239 1.65527 1.47055 1.48476 1.49746 1.10003 1.24967 1.21715 0.93844 0.94141 0.92174 1.22001 1.00103 0.96034 0.99111 1.21688 1.00011 0.98401 0.94798 1.18954 0.93209 0.91119 0.94600 0.95303 1.21042 1.28546 1.00808 1.05620 0.92364 1.25054 0.95672 0.95027 0.98280 1.69868 1.32255 1.14290 1.35448 0.86637 0.78444 0.80057 0.82749 1.20265 1.21248 1.20229 1.22343 0.98237 0.96327 0.83914 0.93587 0.93207 0.89702 0.92659 0.92458 0.92694 0.89688 0.93201 0.93539 0.88829 0.88773 0.75010 0.88881 0.88998 0.91644 0.90962 0.91960 0.92079 0.92927 0.93109 0.92581 0.85856 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.18 37.16 0.30 -1.22 16 2 C -0.05 -0.47 0.77 -154.51 -0.12 -0.59 16 3 C -0.14 -1.07 8.47 37.15 0.31 -0.76 16 4 C -0.15 -1.56 8.18 37.16 0.30 -1.25 16 5 C -0.13 -1.25 4.77 -27.88 -0.13 -1.39 16 6 C 0.52 6.40 7.24 -10.99 -0.08 6.32 16 7 O -0.54 -7.77 11.35 5.56 0.06 -7.70 16 8 N -0.72 -9.51 5.53 -61.47 -0.34 -9.85 16 9 C 0.10 1.42 4.50 -5.19 -0.02 1.39 16 10 C 0.50 9.23 7.77 -10.98 -0.09 9.14 16 11 O -0.54 -11.91 15.08 5.56 0.08 -11.83 16 12 N -0.60 -11.32 2.97 -172.79 -0.51 -11.83 16 13 C 0.10 1.54 6.33 -3.71 -0.02 1.52 16 14 C -0.13 -2.07 6.11 -26.45 -0.16 -2.23 16 15 C -0.11 -2.13 5.11 -26.53 -0.14 -2.27 16 16 C 0.04 0.97 2.25 -91.67 -0.21 0.76 16 17 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 18 C -0.52 -13.82 8.56 -34.44 -0.29 -14.11 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 21 N -0.88 -25.13 11.39 55.43 0.63 -24.50 16 22 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 C 0.11 2.60 5.40 -3.73 -0.02 2.58 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 1.03 5.51 -51.93 -0.29 0.74 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 1.05 5.51 -51.93 -0.29 0.76 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.41 5.49 7.44 -40.82 -0.30 5.19 16 39 H 0.09 1.26 7.70 -51.93 -0.40 0.87 16 40 H 0.09 1.19 7.94 -51.93 -0.41 0.78 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.86 5.93 -51.93 -0.31 0.56 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.12 3.37 5.12 -51.93 -0.27 3.10 16 49 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -30.36 377.59 -8.43 -38.79 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.57 Total: 5.84 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.45 Total: -0.50 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.22 Total: -46.18 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.15 Total: -19.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.36 -8.43 -38.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910949.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.554 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds