Wall clock time and date at job start Fri Apr 10 2020 22:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47408 * 2 1 4 4 C 1.52999 * 109.47067 * 239.99611 * 2 1 3 5 5 C 1.53007 * 109.46949 * 119.99935 * 2 1 3 6 6 C 1.50703 * 109.47018 * 59.99768 * 5 2 1 7 7 O 1.21278 * 119.99986 * 0.02562 * 6 5 2 8 8 N 1.34773 * 119.99899 * 180.02562 * 6 5 2 9 9 C 1.46501 * 119.99895 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47150 * 179.97438 * 9 8 6 11 11 O 1.21281 * 120.00130 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99750 * 179.97438 * 10 9 8 13 13 C 1.46919 * 120.63395 * 0.02562 * 12 10 9 14 14 C 1.53195 * 108.89273 * 126.29715 * 13 12 10 15 15 C 1.53346 * 109.14901 * 54.57640 * 14 13 12 16 16 C 1.53034 * 109.61010 * 298.71225 * 15 14 13 17 17 H 1.08994 * 109.50232 * 301.42239 * 16 15 14 18 18 C 1.50707 * 109.50154 * 181.32368 * 16 15 14 19 19 H 1.08007 * 119.99368 * 0.16385 * 18 16 15 20 20 C 1.37876 * 120.00294 * 180.16159 * 18 16 15 21 21 N 1.31519 * 119.99964 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 119.99777 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47186 * 60.00495 * 22 20 18 24 24 H 1.48508 * 109.46860 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47592 * 299.99905 * 22 20 18 26 26 C 1.46933 * 120.62602 * 179.97438 * 12 10 9 27 27 H 1.08995 * 109.47266 * 300.00366 * 1 2 3 28 28 H 1.09004 * 109.46324 * 60.00017 * 1 2 3 29 29 H 1.08998 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47444 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47364 * 299.99346 * 3 2 1 32 32 H 1.09003 * 109.47495 * 59.99647 * 3 2 1 33 33 H 1.08998 * 109.47586 * 300.00353 * 4 2 1 34 34 H 1.08992 * 109.47072 * 60.00523 * 4 2 1 35 35 H 1.09005 * 109.47161 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.46892 * 300.00400 * 5 2 1 37 37 H 1.08992 * 109.47329 * 179.97438 * 5 2 1 38 38 H 0.96998 * 120.00350 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.47493 * 60.00012 * 9 8 6 40 40 H 1.09001 * 109.47445 * 299.99877 * 9 8 6 41 41 H 1.09002 * 109.58751 * 246.15665 * 13 12 10 42 42 H 1.08996 * 109.58750 * 6.43850 * 13 12 10 43 43 H 1.08997 * 109.49914 * 174.65962 * 14 13 12 44 44 H 1.09002 * 109.49585 * 294.75599 * 14 13 12 45 45 H 1.08999 * 109.41979 * 178.67448 * 15 14 13 46 46 H 1.09001 * 109.42242 * 58.75065 * 15 14 13 47 47 H 0.96995 * 119.99653 * 179.97438 * 21 20 18 48 48 H 1.08994 * 109.58580 * 353.42544 * 26 12 10 49 49 H 1.09006 * 109.57831 * 113.70037 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5376 -2.1421 1.2493 7 8 0.8407 -2.5389 0.3395 8 7 1.8627 -2.9718 2.2604 9 6 1.3747 -4.3531 2.2601 10 6 1.8769 -5.0635 3.4907 11 8 2.5741 -4.4742 4.2890 12 7 1.5511 -6.3539 3.7039 13 6 0.7078 -7.0813 2.7457 14 6 1.4278 -8.3673 2.3278 15 6 1.7941 -9.1692 3.5825 16 6 2.7398 -8.3462 4.4601 17 1 3.6355 -8.0938 3.8927 18 6 3.1239 -9.1491 5.6764 19 1 2.7347 -10.1478 5.8091 20 6 3.9720 -8.6086 6.6196 21 7 4.4455 -7.3923 6.4582 22 14 4.4485 -9.6041 8.1267 23 1 5.1339 -10.8505 7.7002 24 1 5.3635 -8.8036 8.9795 25 1 3.2276 -9.9496 8.8981 26 6 2.0336 -7.0601 4.8987 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1391 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -0.2074 2.1393 37 1 3.1299 -0.7217 1.2491 38 1 2.4197 -2.6544 2.9883 39 1 1.7388 -4.8670 1.3704 40 1 0.2847 -4.3535 2.2594 41 1 -0.2446 -7.3312 3.2133 42 1 0.5319 -6.4594 1.8681 43 1 0.7720 -8.9610 1.6911 44 1 2.3358 -8.1144 1.7803 45 1 2.2858 -10.0967 3.2892 46 1 0.8878 -9.4001 4.1425 47 1 5.0418 -7.0120 7.1219 48 1 2.7343 -6.4249 5.4405 49 1 1.1897 -7.3059 5.5434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597910949.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:50 Heat of formation + Delta-G solvation = -113.243750 kcal Electronic energy + Delta-G solvation = -26531.202477 eV Core-core repulsion = 22877.549412 eV Total energy + Delta-G solvation = -3653.653065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49959 -40.72538 -38.50631 -37.47017 -35.47417 -35.25797 -33.50743 -31.70235 -30.47075 -28.18407 -28.05031 -27.97128 -26.86885 -25.58815 -23.46050 -21.83019 -21.48293 -20.22134 -19.58899 -18.68197 -18.17221 -17.55147 -17.06619 -16.99399 -16.56084 -16.05857 -16.01822 -15.33852 -15.23739 -15.18413 -15.05023 -14.76633 -14.50859 -14.24020 -14.02936 -13.64574 -13.57460 -13.45676 -12.92102 -12.90435 -12.86065 -12.71314 -12.62784 -12.29069 -12.25998 -12.18043 -12.00410 -11.82655 -11.64736 -11.60117 -11.49895 -11.17499 -10.96654 -10.71095 -10.51241 -10.49668 -10.13458 -9.46125 -8.11658 -6.28133 1.41252 1.41950 1.50351 1.56171 1.67163 1.85978 2.39673 2.46131 3.16473 3.44635 3.73503 3.87650 3.97376 4.04455 4.15606 4.24729 4.30422 4.33508 4.38419 4.60217 4.63390 4.67145 4.69889 4.73204 4.79380 4.84785 4.88612 4.90911 5.03012 5.09800 5.12785 5.16275 5.21531 5.24861 5.27206 5.34006 5.37262 5.41583 5.52702 5.58238 5.60915 5.70685 5.89517 5.99019 6.32203 6.50570 6.58186 6.83837 7.17625 7.24459 7.41890 8.91536 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.002757 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.864258 B =10155.252547 C =10952.424343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.052 4.052 3 C -0.138 4.138 4 C -0.152 4.152 5 C -0.131 4.131 6 C 0.515 3.485 7 O -0.557 6.557 8 N -0.721 5.721 9 C 0.114 3.886 10 C 0.494 3.506 11 O -0.583 6.583 12 N -0.604 5.604 13 C 0.100 3.900 14 C -0.127 4.127 15 C -0.107 4.107 16 C 0.038 3.962 17 H -0.013 1.013 18 C -0.537 4.537 19 H 0.061 0.939 20 C 0.011 3.989 21 N -0.914 5.914 22 Si 0.956 3.044 23 H -0.270 1.270 24 H -0.289 1.289 25 H -0.268 1.268 26 C 0.126 3.874 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.411 0.589 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.260 0.740 48 H 0.079 0.921 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.499 12.529 -13.350 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.209 4.209 5 C -0.170 4.170 6 C 0.303 3.697 7 O -0.437 6.437 8 N -0.376 5.376 9 C -0.013 4.013 10 C 0.282 3.718 11 O -0.463 6.463 12 N -0.336 5.336 13 C -0.022 4.022 14 C -0.165 4.165 15 C -0.144 4.144 16 C 0.019 3.981 17 H 0.005 0.995 18 C -0.575 4.575 19 H 0.079 0.921 20 C -0.189 4.189 21 N -0.552 5.552 22 Si 0.781 3.219 23 H -0.195 1.195 24 H -0.214 1.214 25 H -0.193 1.193 26 C 0.003 3.997 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.249 0.751 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.528 12.656 -13.487 20.366 hybrid contribution 0.976 -0.570 1.560 1.926 sum -7.551 12.085 -11.927 18.583 Atomic orbital electron populations 1.22058 0.94648 1.02740 1.01348 1.20298 0.95956 0.95498 0.93473 1.21858 1.01325 0.93890 1.02469 1.22067 1.00307 1.01630 0.96885 1.21868 1.03417 0.90333 1.01398 1.21183 0.79516 0.88550 0.80410 1.90569 1.39060 1.77962 1.36085 1.45965 1.54127 1.10958 1.26528 1.21041 1.01281 0.83477 0.95520 1.21071 0.80316 0.82509 0.87906 1.90676 1.40199 1.66542 1.48931 1.48471 1.50130 1.10438 1.24526 1.22065 0.93514 0.94039 0.92580 1.21970 1.00753 0.96291 0.97499 1.21582 0.98914 0.98074 0.95874 1.18890 0.92899 0.92083 0.94230 0.99467 1.21490 1.28332 1.01175 1.06540 0.92082 1.25866 0.95859 0.95891 1.01254 1.70060 1.32973 1.15917 1.36284 0.85640 0.78285 0.78639 0.79290 1.19483 1.21440 1.19251 1.21726 0.96955 0.95539 0.85444 0.92824 0.92667 0.92021 0.92005 0.92020 0.91852 0.92060 0.92623 0.93018 0.87171 0.87439 0.75100 0.87707 0.86967 0.89723 0.87349 0.87744 0.92991 0.93080 0.92376 0.93100 0.90248 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.18 71.98 0.59 -2.18 16 2 C -0.05 -0.87 0.77 -52.18 -0.04 -0.91 16 3 C -0.14 -1.73 8.47 71.98 0.61 -1.12 16 4 C -0.15 -2.87 8.18 71.98 0.59 -2.28 16 5 C -0.13 -2.22 4.77 29.85 0.14 -2.08 16 6 C 0.51 12.10 7.24 87.66 0.63 12.73 16 7 O -0.56 -15.42 11.35 -3.02 -0.03 -15.46 16 8 N -0.72 -18.45 5.53 -466.78 -2.58 -21.03 16 9 C 0.11 3.06 4.50 85.63 0.39 3.45 16 10 C 0.49 18.30 7.77 87.66 0.68 18.98 16 11 O -0.58 -26.81 15.08 -3.03 -0.05 -26.86 16 12 N -0.60 -22.67 2.97 -818.98 -2.44 -25.11 16 13 C 0.10 2.65 6.33 86.36 0.55 3.20 16 14 C -0.13 -3.58 6.11 30.78 0.19 -3.39 16 15 C -0.11 -3.99 5.11 30.72 0.16 -3.84 16 16 C 0.04 1.88 2.25 -11.48 -0.03 1.85 16 17 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 18 C -0.54 -29.10 8.56 25.60 0.22 -28.88 16 19 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 20 C 0.01 0.60 5.30 84.65 0.45 1.05 16 21 N -0.91 -54.46 11.39 21.45 0.24 -54.21 16 22 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.13 6.04 5.40 86.35 0.47 6.50 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.44 5.51 -2.39 -0.01 1.43 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 1.47 5.51 -2.39 -0.01 1.46 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.41 10.87 7.44 -92.71 -0.69 10.18 16 39 H 0.11 2.61 7.70 -2.39 -0.02 2.59 16 40 H 0.11 2.59 7.94 -2.39 -0.02 2.58 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.11 2.15 5.93 -2.39 -0.01 2.14 16 43 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 48 H 0.08 4.58 5.12 -2.39 -0.01 4.57 16 49 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -69.92 377.59 3.00 -66.92 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.24 Total: 26.97 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.59 Total: 3.10 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -4.77 Total: -100.35 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.08 Total: -42.32 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.92 3.00 -66.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910949.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.322 kcal (2) G-P(sol) polarization free energy of solvation -69.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds