Wall clock time and date at job start Fri Apr 10 2020 22:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47459 * 2 1 4 4 C 1.53010 * 109.46641 * 240.00058 * 2 1 3 5 5 C 1.53003 * 109.47581 * 120.00708 * 2 1 3 6 6 C 1.50700 * 109.47011 * 59.99193 * 5 2 1 7 7 O 1.21277 * 120.00023 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00003 * 180.02562 * 6 5 2 9 9 C 1.46491 * 120.00091 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46957 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46931 * 120.63086 * 0.02562 * 12 10 9 14 14 C 1.52760 * 109.00543 * 233.58109 * 13 12 10 15 15 C 1.53039 * 109.38459 * 305.58756 * 14 13 12 16 16 C 1.53042 * 109.54031 * 61.24177 * 15 14 13 17 17 H 1.08998 * 109.49757 * 58.58603 * 16 15 14 18 18 C 1.50695 * 109.52442 * 178.67006 * 16 15 14 19 19 H 1.07999 * 120.00219 * 359.85116 * 18 16 15 20 20 C 1.37880 * 120.00132 * 179.85561 * 18 16 15 21 21 N 1.31514 * 119.99405 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 120.00248 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46842 * 59.99649 * 22 20 18 24 24 H 1.48498 * 109.47128 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47190 * 299.99988 * 22 20 18 26 26 C 1.46925 * 120.62933 * 180.27723 * 12 10 9 27 27 H 1.09004 * 109.46610 * 299.99825 * 1 2 3 28 28 H 1.08994 * 109.47403 * 59.99662 * 1 2 3 29 29 H 1.09001 * 109.47486 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46974 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47345 * 300.00533 * 3 2 1 32 32 H 1.09004 * 109.47066 * 60.00455 * 3 2 1 33 33 H 1.09001 * 109.47172 * 300.00182 * 4 2 1 34 34 H 1.09003 * 109.46863 * 60.00263 * 4 2 1 35 35 H 1.09000 * 109.46753 * 179.97438 * 4 2 1 36 36 H 1.08998 * 109.46547 * 299.99827 * 5 2 1 37 37 H 1.08994 * 109.47099 * 179.97438 * 5 2 1 38 38 H 0.97003 * 119.99349 * 0.02562 * 8 6 5 39 39 H 1.09004 * 109.47166 * 60.00164 * 9 8 6 40 40 H 1.08994 * 109.47507 * 299.99870 * 9 8 6 41 41 H 1.08997 * 109.58191 * 353.41302 * 13 12 10 42 42 H 1.09000 * 109.58404 * 113.84014 * 13 12 10 43 43 H 1.09004 * 109.56227 * 185.55021 * 14 13 12 44 44 H 1.08994 * 109.36282 * 65.49817 * 14 13 12 45 45 H 1.09005 * 109.46040 * 301.21818 * 15 14 13 46 46 H 1.09001 * 109.45171 * 181.25894 * 15 14 13 47 47 H 0.97006 * 119.99602 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.58470 * 246.15337 * 26 12 10 49 49 H 1.08995 * 109.58817 * 6.44095 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 2.0401 -0.7214 1.2491 6 6 1.5376 -2.1422 1.2491 7 8 0.8406 -2.5388 0.3393 8 7 1.8629 -2.9720 2.2601 9 6 1.3749 -4.3533 2.2597 10 6 1.8773 -5.0638 3.4902 11 8 2.5739 -4.4742 4.2890 12 7 1.5474 -6.3526 3.7060 13 6 0.6994 -7.0784 2.7506 14 6 -0.4854 -7.6864 3.4990 15 6 0.0310 -8.5423 4.6579 16 6 0.8199 -7.6635 5.6313 17 1 0.1781 -6.8641 6.0018 18 6 1.3005 -8.5000 6.7889 19 1 1.0650 -9.5533 6.8286 20 6 2.0409 -7.9208 7.7976 21 7 2.3281 -6.6384 7.7491 22 14 2.6361 -8.9577 9.2329 23 1 3.5089 -10.0478 8.7277 24 1 3.4050 -8.1047 10.1745 25 1 1.4682 -9.5450 9.9372 26 6 2.0245 -7.0569 4.9039 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4423 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6765 -1.7489 -1.2494 34 1 1.6765 -0.2074 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 1.6768 -0.2076 2.1391 37 1 3.1300 -0.7217 1.2488 38 1 2.4201 -2.6546 2.9879 39 1 1.7389 -4.8670 1.3699 40 1 0.2850 -4.3537 2.2591 41 1 0.3341 -6.3891 1.9894 42 1 1.2774 -7.8734 2.2795 43 1 -1.0668 -8.3084 2.8184 44 1 -1.1149 -6.8870 3.8896 45 1 0.6804 -9.3267 4.2689 46 1 -0.8126 -8.9947 5.1791 47 1 2.8493 -6.2309 8.4585 48 1 2.7126 -7.8502 4.6117 49 1 2.5355 -6.3540 5.5619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597910950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:53 Heat of formation + Delta-G solvation = -94.356829 kcal Electronic energy + Delta-G solvation = -26533.019605 eV Core-core repulsion = 22880.185538 eV Total energy + Delta-G solvation = -3652.834067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36557 -39.42552 -37.09186 -36.51400 -34.30564 -33.46570 -31.88657 -30.12778 -29.36566 -27.35720 -27.27443 -26.96886 -25.08006 -24.08710 -21.88865 -20.76345 -20.01879 -19.17673 -18.31688 -17.38153 -16.42142 -16.26248 -15.87210 -15.73846 -14.97303 -14.88592 -14.57054 -14.44240 -14.34631 -13.95299 -13.77463 -13.41312 -12.93865 -12.83350 -12.67746 -12.48794 -12.28041 -12.24095 -12.02284 -11.90542 -11.87613 -11.34451 -11.22043 -11.04125 -10.95480 -10.88767 -10.78467 -10.57012 -10.44866 -10.28778 -9.95789 -9.55704 -9.46591 -9.17504 -9.07578 -8.96873 -8.48271 -7.86570 -6.04484 -4.13205 2.60065 3.00687 3.05712 3.29111 3.35063 3.36327 3.72039 4.39047 4.49805 4.65742 4.68076 4.77468 5.07695 5.22705 5.26306 5.30055 5.34576 5.39488 5.41314 5.44039 5.48522 5.49834 5.62769 5.62982 5.73904 5.78827 5.92301 5.96339 5.98289 6.09520 6.10913 6.24596 6.26238 6.37519 6.52541 6.57332 6.60645 6.79285 6.91482 7.05634 7.16849 7.52678 7.57158 7.80679 7.92920 8.10782 8.24330 8.32835 8.66007 8.90678 9.52587 11.00808 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.002758 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.804654 B =10150.242281 C =10946.442763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.142 4.142 4 C -0.153 4.153 5 C -0.133 4.133 6 C 0.515 3.485 7 O -0.538 6.538 8 N -0.716 5.716 9 C 0.100 3.900 10 C 0.499 3.501 11 O -0.537 6.537 12 N -0.599 5.599 13 C 0.105 3.895 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.112 3.888 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.412 0.588 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.264 0.736 48 H 0.044 0.956 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 10.303 -15.416 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.051 4.051 3 C -0.200 4.200 4 C -0.210 4.210 5 C -0.173 4.173 6 C 0.303 3.697 7 O -0.416 6.416 8 N -0.371 5.371 9 C -0.028 4.028 10 C 0.285 3.715 11 O -0.415 6.415 12 N -0.332 5.332 13 C -0.018 4.018 14 C -0.173 4.173 15 C -0.149 4.149 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.203 1.203 26 C -0.008 4.008 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.250 0.750 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.734 10.453 -15.507 18.781 hybrid contribution 0.585 -0.472 1.200 1.416 sum -1.149 9.980 -14.308 17.482 Atomic orbital electron populations 1.22111 0.94079 1.04172 1.00720 1.20266 0.96424 0.94421 0.94033 1.21901 1.00868 0.95360 1.01836 1.22113 0.99948 1.02918 0.96071 1.21784 1.02538 0.92360 1.00585 1.20666 0.80096 0.87697 0.81267 1.90560 1.38128 1.77387 1.35575 1.45864 1.53888 1.11238 1.26105 1.21135 1.00587 0.83233 0.97803 1.20319 0.81448 0.82640 0.87080 1.90700 1.38829 1.65251 1.46739 1.48478 1.49345 1.10578 1.24792 1.21632 0.92455 0.96343 0.91402 1.21873 0.96832 0.99955 0.98604 1.21636 0.99625 0.98073 0.95584 1.18971 0.92363 0.94478 0.92077 0.95304 1.21039 1.34467 0.95490 1.05028 0.92367 1.25056 0.95922 0.94949 0.98102 1.69872 1.38336 1.10141 1.33501 0.86637 0.78871 0.80156 0.82232 1.20235 1.21248 1.20260 1.22359 0.98725 0.96557 0.83162 0.93536 0.93205 0.89690 0.92691 0.92463 0.92655 0.89695 0.93209 0.93592 0.88772 0.88828 0.75009 0.89008 0.88872 0.90943 0.91659 0.91960 0.92095 0.93102 0.92911 0.92585 0.93796 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.18 37.16 0.30 -1.25 16 2 C -0.05 -0.48 0.77 -154.50 -0.12 -0.59 16 3 C -0.14 -1.07 8.47 37.16 0.31 -0.76 16 4 C -0.15 -1.52 8.18 37.16 0.30 -1.22 16 5 C -0.13 -1.25 4.77 -27.88 -0.13 -1.39 16 6 C 0.52 6.40 7.24 -10.98 -0.08 6.32 16 7 O -0.54 -7.77 11.35 5.56 0.06 -7.70 16 8 N -0.72 -9.51 5.53 -61.48 -0.34 -9.85 16 9 C 0.10 1.42 4.50 -5.20 -0.02 1.39 16 10 C 0.50 9.23 7.77 -10.98 -0.09 9.14 16 11 O -0.54 -11.91 15.08 5.55 0.08 -11.83 16 12 N -0.60 -11.32 2.98 -173.00 -0.52 -11.84 16 13 C 0.11 1.55 6.32 -3.93 -0.02 1.52 16 14 C -0.13 -2.07 6.06 -26.83 -0.16 -2.23 16 15 C -0.11 -2.14 5.11 -26.69 -0.14 -2.27 16 16 C 0.04 0.96 2.25 -91.63 -0.21 0.76 16 17 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 18 C -0.52 -13.82 8.57 -34.44 -0.29 -14.12 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 21 N -0.88 -25.13 11.39 55.43 0.63 -24.50 16 22 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.11 2.60 5.40 -3.69 -0.02 2.58 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.05 5.51 -51.93 -0.29 0.76 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 1.03 5.51 -51.93 -0.29 0.75 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.41 5.49 7.44 -40.82 -0.30 5.19 16 39 H 0.09 1.19 7.95 -51.93 -0.41 0.77 16 40 H 0.09 1.27 7.68 -51.93 -0.40 0.87 16 41 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.12 3.36 5.12 -51.93 -0.27 3.10 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -30.37 377.54 -8.43 -38.80 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -8.57 Total: 5.83 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.46 Total: -0.51 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.22 Total: -46.18 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.15 Total: -19.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.37 -8.43 -38.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.553 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds