Wall clock time and date at job start Fri Apr 10 2020 22:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47459 * 2 1 4 4 C 1.53010 * 109.46641 * 240.00058 * 2 1 3 5 5 C 1.53003 * 109.47581 * 120.00708 * 2 1 3 6 6 C 1.50700 * 109.47011 * 59.99193 * 5 2 1 7 7 O 1.21277 * 120.00023 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00003 * 180.02562 * 6 5 2 9 9 C 1.46491 * 120.00091 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46957 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46931 * 120.63086 * 0.02562 * 12 10 9 14 14 C 1.52760 * 109.00543 * 233.58109 * 13 12 10 15 15 C 1.53039 * 109.38459 * 305.58756 * 14 13 12 16 16 C 1.53042 * 109.54031 * 61.24177 * 15 14 13 17 17 H 1.08998 * 109.49757 * 58.58603 * 16 15 14 18 18 C 1.50695 * 109.52442 * 178.67006 * 16 15 14 19 19 H 1.07999 * 120.00219 * 359.85116 * 18 16 15 20 20 C 1.37880 * 120.00132 * 179.85561 * 18 16 15 21 21 N 1.31514 * 119.99405 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 120.00248 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46842 * 59.99649 * 22 20 18 24 24 H 1.48498 * 109.47128 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47190 * 299.99988 * 22 20 18 26 26 C 1.46925 * 120.62933 * 180.27723 * 12 10 9 27 27 H 1.09004 * 109.46610 * 299.99825 * 1 2 3 28 28 H 1.08994 * 109.47403 * 59.99662 * 1 2 3 29 29 H 1.09001 * 109.47486 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46974 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47345 * 300.00533 * 3 2 1 32 32 H 1.09004 * 109.47066 * 60.00455 * 3 2 1 33 33 H 1.09001 * 109.47172 * 300.00182 * 4 2 1 34 34 H 1.09003 * 109.46863 * 60.00263 * 4 2 1 35 35 H 1.09000 * 109.46753 * 179.97438 * 4 2 1 36 36 H 1.08998 * 109.46547 * 299.99827 * 5 2 1 37 37 H 1.08994 * 109.47099 * 179.97438 * 5 2 1 38 38 H 0.97003 * 119.99349 * 0.02562 * 8 6 5 39 39 H 1.09004 * 109.47166 * 60.00164 * 9 8 6 40 40 H 1.08994 * 109.47507 * 299.99870 * 9 8 6 41 41 H 1.08997 * 109.58191 * 353.41302 * 13 12 10 42 42 H 1.09000 * 109.58404 * 113.84014 * 13 12 10 43 43 H 1.09004 * 109.56227 * 185.55021 * 14 13 12 44 44 H 1.08994 * 109.36282 * 65.49817 * 14 13 12 45 45 H 1.09005 * 109.46040 * 301.21818 * 15 14 13 46 46 H 1.09001 * 109.45171 * 181.25894 * 15 14 13 47 47 H 0.97006 * 119.99602 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.58470 * 246.15337 * 26 12 10 49 49 H 1.08995 * 109.58817 * 6.44095 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 2.0401 -0.7214 1.2491 6 6 1.5376 -2.1422 1.2491 7 8 0.8406 -2.5388 0.3393 8 7 1.8629 -2.9720 2.2601 9 6 1.3749 -4.3533 2.2597 10 6 1.8773 -5.0638 3.4902 11 8 2.5739 -4.4742 4.2890 12 7 1.5474 -6.3526 3.7060 13 6 0.6994 -7.0784 2.7506 14 6 -0.4854 -7.6864 3.4990 15 6 0.0310 -8.5423 4.6579 16 6 0.8199 -7.6635 5.6313 17 1 0.1781 -6.8641 6.0018 18 6 1.3005 -8.5000 6.7889 19 1 1.0650 -9.5533 6.8286 20 6 2.0409 -7.9208 7.7976 21 7 2.3281 -6.6384 7.7491 22 14 2.6361 -8.9577 9.2329 23 1 3.5089 -10.0478 8.7277 24 1 3.4050 -8.1047 10.1745 25 1 1.4682 -9.5450 9.9372 26 6 2.0245 -7.0569 4.9039 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4423 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6765 -1.7489 -1.2494 34 1 1.6765 -0.2074 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 1.6768 -0.2076 2.1391 37 1 3.1300 -0.7217 1.2488 38 1 2.4201 -2.6546 2.9879 39 1 1.7389 -4.8670 1.3699 40 1 0.2850 -4.3537 2.2591 41 1 0.3341 -6.3891 1.9894 42 1 1.2774 -7.8734 2.2795 43 1 -1.0668 -8.3084 2.8184 44 1 -1.1149 -6.8870 3.8896 45 1 0.6804 -9.3267 4.2689 46 1 -0.8126 -8.9947 5.1791 47 1 2.8493 -6.2309 8.4585 48 1 2.7126 -7.8502 4.6117 49 1 2.5355 -6.3540 5.5619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597910950.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:52 Heat of formation + Delta-G solvation = -113.266422 kcal Electronic energy + Delta-G solvation = -26533.839586 eV Core-core repulsion = 22880.185538 eV Total energy + Delta-G solvation = -3653.654048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50193 -40.72975 -38.52217 -37.47049 -35.47502 -35.25827 -33.52372 -31.71732 -30.47217 -28.18462 -28.04986 -27.97095 -26.87389 -25.59163 -23.45435 -21.82985 -21.48365 -20.22040 -19.58862 -18.68368 -18.16967 -17.55254 -17.06478 -16.99603 -16.56101 -16.05816 -16.01884 -15.33911 -15.23959 -15.19103 -15.05167 -14.77366 -14.50801 -14.24010 -14.03443 -13.64595 -13.57740 -13.46033 -12.92139 -12.90385 -12.86048 -12.71452 -12.62756 -12.29126 -12.25947 -12.18083 -12.00394 -11.82527 -11.64673 -11.60107 -11.49863 -11.17679 -10.96210 -10.71294 -10.51252 -10.49662 -10.13392 -9.46155 -8.11657 -6.28080 1.41201 1.41968 1.50357 1.56052 1.67125 1.86169 2.39691 2.46141 3.16486 3.44535 3.73524 3.87664 3.97378 4.04680 4.15912 4.24799 4.30586 4.33307 4.38436 4.60083 4.63383 4.67192 4.69922 4.73595 4.79728 4.85208 4.88559 4.90885 5.03080 5.09864 5.12819 5.16335 5.21557 5.24721 5.27283 5.34039 5.37280 5.41613 5.52763 5.58219 5.60907 5.70687 5.89461 5.98785 6.32252 6.50557 6.58180 6.83914 7.17635 7.24480 7.41907 8.91536 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.002758 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.804654 B =10150.242281 C =10946.442763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.052 4.052 3 C -0.138 4.138 4 C -0.151 4.151 5 C -0.131 4.131 6 C 0.515 3.485 7 O -0.557 6.557 8 N -0.721 5.721 9 C 0.114 3.886 10 C 0.494 3.506 11 O -0.583 6.583 12 N -0.604 5.604 13 C 0.100 3.900 14 C -0.128 4.128 15 C -0.107 4.107 16 C 0.038 3.962 17 H -0.013 1.013 18 C -0.537 4.537 19 H 0.061 0.939 20 C 0.011 3.989 21 N -0.914 5.914 22 Si 0.956 3.044 23 H -0.268 1.268 24 H -0.289 1.289 25 H -0.270 1.270 26 C 0.126 3.874 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.411 0.589 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.260 0.740 48 H 0.038 0.962 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 10.261 -17.240 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.208 4.208 5 C -0.170 4.170 6 C 0.303 3.697 7 O -0.437 6.437 8 N -0.376 5.376 9 C -0.013 4.013 10 C 0.282 3.718 11 O -0.463 6.463 12 N -0.336 5.336 13 C -0.022 4.022 14 C -0.166 4.166 15 C -0.144 4.144 16 C 0.019 3.981 17 H 0.005 0.995 18 C -0.575 4.575 19 H 0.079 0.921 20 C -0.189 4.189 21 N -0.552 5.552 22 Si 0.781 3.219 23 H -0.193 1.193 24 H -0.214 1.214 25 H -0.195 1.195 26 C 0.003 3.997 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.249 0.751 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.169 10.392 -17.370 20.357 hybrid contribution 0.675 -0.464 1.745 1.928 sum -1.494 9.928 -15.625 18.572 Atomic orbital electron populations 1.22066 0.94831 1.02705 1.01286 1.20300 0.95818 0.95537 0.93572 1.21858 1.01391 0.93881 1.02411 1.22062 1.00382 1.01612 0.96742 1.21867 1.03536 0.90306 1.01307 1.21183 0.79513 0.88528 0.80432 1.90568 1.38982 1.77941 1.36181 1.45966 1.54111 1.11012 1.26494 1.21038 1.00994 0.83568 0.95712 1.21071 0.80543 0.82328 0.87860 1.90676 1.40823 1.66215 1.48633 1.48473 1.49848 1.11033 1.24212 1.21984 0.91772 0.97421 0.90982 1.21843 0.97238 0.99647 0.97823 1.21531 0.99019 0.97918 0.95978 1.18909 0.92471 0.93838 0.92896 0.99468 1.21488 1.34053 0.95909 1.06098 0.92086 1.25867 0.96253 0.95920 1.00827 1.70063 1.39211 1.11846 1.34102 0.85640 0.78521 0.78649 0.79050 1.19265 1.21437 1.19472 1.21741 0.98020 0.95438 0.84452 0.93015 0.92628 0.92061 0.91849 0.92025 0.92001 0.92013 0.92670 0.92828 0.87437 0.87171 0.75101 0.86974 0.87698 0.87333 0.89729 0.87740 0.93009 0.92369 0.93058 0.93104 0.94374 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.18 71.98 0.59 -2.28 16 2 C -0.05 -0.87 0.77 -52.18 -0.04 -0.91 16 3 C -0.14 -1.73 8.47 71.98 0.61 -1.12 16 4 C -0.15 -2.77 8.18 71.99 0.59 -2.18 16 5 C -0.13 -2.22 4.77 29.85 0.14 -2.08 16 6 C 0.51 12.10 7.24 87.66 0.63 12.73 16 7 O -0.56 -15.42 11.35 -3.02 -0.03 -15.46 16 8 N -0.72 -18.46 5.53 -466.81 -2.58 -21.04 16 9 C 0.11 3.06 4.50 85.64 0.39 3.45 16 10 C 0.49 18.30 7.77 87.66 0.68 18.98 16 11 O -0.58 -26.82 15.08 -3.04 -0.05 -26.86 16 12 N -0.60 -22.67 2.98 -819.64 -2.44 -25.11 16 13 C 0.10 2.66 6.32 86.22 0.54 3.21 16 14 C -0.13 -3.59 6.06 30.53 0.19 -3.40 16 15 C -0.11 -3.99 5.11 30.62 0.16 -3.84 16 16 C 0.04 1.87 2.25 -11.45 -0.03 1.85 16 17 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 18 C -0.54 -29.11 8.57 25.60 0.22 -28.89 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 20 C 0.01 0.60 5.30 84.66 0.45 1.05 16 21 N -0.91 -54.45 11.39 21.45 0.24 -54.21 16 22 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 C 0.13 6.04 5.40 86.38 0.47 6.51 16 27 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.47 5.51 -2.39 -0.01 1.46 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.06 1.44 5.51 -2.39 -0.01 1.43 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 10.87 7.44 -92.71 -0.69 10.18 16 39 H 0.11 2.59 7.95 -2.38 -0.02 2.57 16 40 H 0.11 2.61 7.68 -2.39 -0.02 2.59 16 41 H 0.11 2.15 5.93 -2.39 -0.01 2.14 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.10 2.14 8.14 -2.38 -0.02 2.13 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 46 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 48 H 0.04 1.82 8.14 -2.38 -0.02 1.81 16 49 H 0.08 4.57 5.12 -2.39 -0.01 4.56 16 Total: -1.00 -69.94 377.54 2.99 -66.94 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.24 Total: 26.97 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.59 Total: 3.09 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -4.78 Total: -100.36 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.08 Total: -42.32 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -69.94 2.99 -66.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910950.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.322 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds