Wall clock time and date at job start Fri Apr 10 2020 22:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.52997 * 109.47624 * 120.00528 * 2 1 3 5 5 C 1.52997 * 109.47232 * 174.99696 * 4 2 1 6 6 C 1.50703 * 109.47084 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46920 * 120.63110 * 0.02562 * 12 10 9 14 14 C 1.53193 * 108.77389 * 126.36407 * 13 12 10 15 15 C 1.53040 * 109.30943 * 54.63814 * 14 13 12 16 16 C 1.53046 * 109.54022 * 298.62950 * 15 14 13 17 17 H 1.09002 * 109.49744 * 301.38765 * 16 15 14 18 18 C 1.50697 * 109.50002 * 181.31872 * 16 15 14 19 19 H 1.08000 * 120.00074 * 0.02562 * 18 16 15 20 20 C 1.37876 * 119.99905 * 179.97438 * 18 16 15 21 21 N 1.31512 * 120.00101 * 179.97438 * 20 18 16 22 22 Si 1.86804 * 120.00047 * 0.02562 * 20 18 16 23 23 H 1.48501 * 109.47064 * 89.99573 * 22 20 18 24 24 H 1.48492 * 109.47234 * 209.99601 * 22 20 18 25 25 H 1.48496 * 109.47094 * 329.99840 * 22 20 18 26 26 C 1.46928 * 120.62698 * 179.72199 * 12 10 9 27 27 H 1.09008 * 109.46432 * 299.99147 * 1 2 3 28 28 H 1.08987 * 109.47576 * 59.99310 * 1 2 3 29 29 H 1.09000 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46876 * 240.00556 * 2 1 3 31 31 H 1.08996 * 109.47271 * 300.01086 * 3 2 1 32 32 H 1.09008 * 109.46731 * 60.00467 * 3 2 1 33 33 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47153 * 54.99705 * 4 2 1 35 35 H 1.09001 * 109.46832 * 294.99896 * 4 2 1 36 36 H 1.09002 * 109.47045 * 59.99942 * 5 4 2 37 37 H 1.09001 * 109.47375 * 299.99867 * 5 4 2 38 38 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 40 40 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 41 41 H 1.08998 * 109.58454 * 246.15028 * 13 12 10 42 42 H 1.09003 * 109.58754 * 6.43610 * 13 12 10 43 43 H 1.09007 * 109.49938 * 174.58337 * 14 13 12 44 44 H 1.08998 * 109.50312 * 294.68437 * 14 13 12 45 45 H 1.08998 * 109.46254 * 58.65341 * 15 14 13 46 46 H 1.09005 * 109.46086 * 178.62677 * 15 14 13 47 47 H 0.96997 * 119.99821 * 180.02562 * 21 20 18 48 48 H 1.09003 * 109.58862 * 353.41739 * 26 12 10 49 49 H 1.08997 * 109.58643 * 113.84800 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1877 6 6 4.0674 -1.5411 2.4184 7 8 3.2831 -1.9222 3.2613 8 7 5.3884 -1.7525 2.5823 9 6 5.8768 -2.4432 3.7784 10 6 7.3787 -2.5512 3.7179 11 8 7.9817 -2.0957 2.7694 12 7 8.0518 -3.1532 4.7185 13 6 7.3353 -3.7093 5.8743 14 6 7.7468 -5.1742 6.0513 15 6 9.2712 -5.2627 6.1548 16 6 9.9032 -4.7360 4.8643 17 1 9.5426 -5.3204 4.0177 18 6 11.4029 -4.8536 4.9542 19 1 11.8601 -5.2634 5.8427 20 6 12.1913 -4.4390 3.9018 21 7 13.5001 -4.5411 3.9805 22 14 11.4004 -3.7308 2.3647 23 1 11.2585 -2.2602 2.5137 24 1 12.2539 -4.0290 1.1867 25 1 10.0602 -4.3404 2.1719 26 6 9.5155 -3.2715 4.6709 27 1 -0.3632 0.5138 0.8902 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6766 1.9564 -0.8898 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6055 -1.7199 1.2950 35 1 1.7518 -0.1584 2.1369 36 1 3.9995 0.1674 1.1418 37 1 3.8532 -1.3940 0.2999 38 1 6.0156 -1.4481 1.9079 39 1 5.4425 -3.4419 3.8241 40 1 5.5880 -1.8805 4.6661 41 1 7.5948 -3.1459 6.7707 42 1 6.2607 -3.6476 5.7023 43 1 7.2968 -5.5712 6.9614 44 1 7.4061 -5.7541 5.1936 45 1 9.6134 -4.6627 6.9979 46 1 9.5653 -6.3015 6.3052 47 1 14.0547 -4.2490 3.2403 48 1 9.8791 -2.9235 3.7040 49 1 9.9567 -2.6717 5.4669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912459.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:55 Heat of formation + Delta-G solvation = -97.857762 kcal Electronic energy + Delta-G solvation = -26128.692569 eV Core-core repulsion = 22475.706690 eV Total energy + Delta-G solvation = -3652.985879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36719 -39.48333 -37.27203 -36.82807 -34.51363 -33.54896 -32.06881 -31.44492 -30.68001 -28.20037 -27.50661 -25.28086 -24.99294 -23.78253 -22.12224 -20.62886 -20.22119 -19.95165 -18.72991 -17.60185 -16.83391 -16.59765 -16.28854 -16.05850 -15.52301 -15.14474 -14.86798 -14.37059 -14.25140 -14.03186 -13.97085 -13.60417 -13.51010 -13.13363 -12.90510 -12.84294 -12.70338 -12.55186 -12.28670 -12.16371 -12.07662 -11.62882 -11.41144 -11.14279 -11.12630 -10.96599 -10.86458 -10.67413 -10.48867 -10.18009 -10.03857 -9.87259 -9.73820 -9.28601 -9.28042 -9.15605 -8.66395 -8.21675 -6.15402 -4.17270 2.48223 2.72030 2.81365 3.32286 3.37964 3.45606 3.49939 4.36677 4.41566 4.47595 4.50054 4.56165 4.79553 4.93830 5.03410 5.11125 5.16427 5.20285 5.23435 5.27602 5.28990 5.32023 5.40293 5.43959 5.49710 5.57666 5.70663 5.72253 5.74963 5.87508 5.91915 6.02130 6.02753 6.07646 6.09406 6.19465 6.33367 6.44611 6.56137 6.66939 6.73084 7.08372 7.35452 7.37242 7.64465 7.67497 8.06547 8.27776 8.44167 8.87850 9.45712 10.96563 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021862 B = 0.002792 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.475502 B =10026.104607 C =11034.054996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.098 4.098 5 C -0.142 4.142 6 C 0.514 3.486 7 O -0.546 6.546 8 N -0.719 5.719 9 C 0.101 3.899 10 C 0.501 3.499 11 O -0.546 6.546 12 N -0.600 5.600 13 C 0.105 3.895 14 C -0.137 4.137 15 C -0.101 4.101 16 C 0.004 3.996 17 H 0.030 0.970 18 C -0.516 4.516 19 H 0.078 0.922 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.881 3.119 23 H -0.273 1.273 24 H -0.295 1.295 25 H -0.265 1.265 26 C 0.102 3.898 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.412 0.588 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.265 0.735 48 H 0.080 0.920 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.872 7.951 -3.725 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.209 4.209 4 C -0.136 4.136 5 C -0.182 4.182 6 C 0.301 3.699 7 O -0.423 6.423 8 N -0.374 5.374 9 C -0.026 4.026 10 C 0.287 3.713 11 O -0.425 6.425 12 N -0.333 5.333 13 C -0.018 4.018 14 C -0.175 4.175 15 C -0.139 4.139 16 C -0.016 4.016 17 H 0.048 0.952 18 C -0.555 4.555 19 H 0.096 0.904 20 C -0.131 4.131 21 N -0.532 5.532 22 Si 0.711 3.289 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.190 1.190 26 C -0.019 4.019 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.250 0.750 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.905 7.947 -3.690 24.523 hybrid contribution 0.176 0.512 -1.105 1.230 sum -22.729 8.458 -4.795 24.721 Atomic orbital electron populations 1.21823 0.95071 1.01824 1.01714 1.21158 0.95942 0.96394 0.98275 1.21925 1.01192 0.95977 1.01787 1.21406 0.92636 1.01584 0.98001 1.21750 0.98234 1.01880 0.96298 1.20771 0.81520 0.79245 0.88378 1.90693 1.55357 1.51557 1.44729 1.45840 1.08114 1.59740 1.23724 1.21119 0.92017 0.99580 0.89923 1.20449 0.89275 0.78698 0.82857 1.90679 1.69705 1.48883 1.33196 1.48401 1.09187 1.55585 1.20095 1.21800 0.95918 0.95339 0.88748 1.21992 0.98890 0.95000 1.01641 1.21450 0.91825 1.01348 0.99258 1.19412 0.97048 0.90564 0.94529 0.95193 1.20941 0.88003 1.42631 1.03881 0.90397 1.25060 0.94760 0.94998 0.98255 1.69887 1.03752 1.47108 1.32438 0.86957 0.79128 0.80045 0.82754 1.19966 1.22274 1.18958 1.22586 0.75470 1.01167 1.02645 0.92618 0.92762 0.92626 0.91130 0.92781 0.92597 0.92423 0.91137 0.91124 0.88571 0.88732 0.74996 0.88556 0.88593 0.91014 0.90456 0.91340 0.91920 0.92393 0.92074 0.92466 0.90238 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 2 C -0.10 -0.67 2.92 -90.62 -0.26 -0.93 16 3 C -0.15 -0.95 8.95 37.16 0.33 -0.62 16 4 C -0.10 -0.82 3.97 -26.73 -0.11 -0.93 16 5 C -0.14 -1.20 5.45 -27.88 -0.15 -1.35 16 6 C 0.51 6.18 7.83 -10.98 -0.09 6.09 16 7 O -0.55 -8.21 15.98 5.56 0.09 -8.12 16 8 N -0.72 -8.98 5.53 -61.47 -0.34 -9.32 16 9 C 0.10 1.33 4.50 -5.19 -0.02 1.31 16 10 C 0.50 8.60 7.77 -10.98 -0.09 8.51 16 11 O -0.55 -11.28 15.08 5.56 0.08 -11.20 16 12 N -0.60 -10.49 2.98 -173.05 -0.52 -11.00 16 13 C 0.10 1.39 6.34 -3.71 -0.02 1.36 16 14 C -0.14 -1.91 6.08 -26.61 -0.16 -2.07 16 15 C -0.10 -1.82 5.11 -26.69 -0.14 -1.96 16 16 C 0.00 0.09 1.83 -91.89 -0.17 -0.08 16 17 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 18 C -0.52 -14.04 9.15 -34.44 -0.31 -14.35 16 19 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 20 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 21 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 22 Si 0.88 22.76 24.32 -169.99 -4.13 18.63 16 23 H -0.27 -7.09 6.93 56.52 0.39 -6.70 16 24 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.26 -6.82 6.53 56.52 0.37 -6.45 16 26 C 0.10 2.19 5.09 -3.95 -0.02 2.17 16 27 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.05 0.30 8.14 -51.94 -0.42 -0.12 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 33 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.10 0.68 6.57 -51.93 -0.34 0.34 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.41 5.05 7.44 -40.82 -0.30 4.75 16 39 H 0.10 1.20 7.70 -51.93 -0.40 0.80 16 40 H 0.10 1.14 7.94 -51.93 -0.41 0.73 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.08 1.94 2.32 -51.93 -0.12 1.81 16 49 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -33.28 378.02 -7.85 -41.12 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.53 Total: 1.92 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.97 Total: -1.46 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.08 Total: -46.59 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.17 Total: -19.32 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.13 Total: 18.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.28 -7.85 -41.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912459.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.734 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds