Wall clock time and date at job start Fri Apr 10 2020 22:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00474 * 2 1 4 4 N 1.34780 * 119.99579 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99756 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.46983 * 35.00696 * 5 4 2 7 7 C 1.52994 * 109.47225 * 275.00073 * 5 4 2 8 8 C 1.53001 * 109.47369 * 66.71520 * 7 5 4 9 9 C 1.53008 * 109.46831 * 64.99694 * 8 7 5 10 10 C 1.52997 * 109.47351 * 184.99859 * 8 7 5 11 11 C 1.50707 * 109.46734 * 154.99922 * 5 4 2 12 12 O 1.21274 * 120.00009 * 17.97651 * 11 5 4 13 13 N 1.34777 * 119.99643 * 197.97661 * 11 5 4 14 14 C 1.46927 * 120.63337 * 4.81841 * 13 11 5 15 15 C 1.53619 * 108.54509 * 126.37019 * 14 13 11 16 16 C 1.53043 * 109.24213 * 54.85535 * 15 14 13 17 17 C 1.50700 * 109.44820 * 178.49837 * 16 15 14 18 18 H 1.08004 * 119.99637 * 120.06672 * 17 16 15 19 19 C 1.37877 * 120.00111 * 300.06075 * 17 16 15 20 20 N 1.31509 * 119.99828 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99850 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47016 * 90.00460 * 21 19 17 23 23 H 1.48497 * 109.47143 * 209.99813 * 21 19 17 24 24 H 1.48495 * 109.47448 * 330.00481 * 21 19 17 25 25 C 1.53041 * 109.53805 * 298.51271 * 16 15 14 26 26 C 1.46927 * 120.63187 * 185.10201 * 13 11 5 27 27 H 1.09001 * 109.47116 * 270.00493 * 1 2 3 28 28 H 1.09004 * 109.46689 * 30.00083 * 1 2 3 29 29 H 1.09002 * 109.47266 * 150.00383 * 1 2 3 30 30 H 0.96996 * 120.00278 * 359.97438 * 4 2 1 31 31 H 1.08997 * 109.47000 * 306.71116 * 7 5 4 32 32 H 1.09009 * 109.47197 * 186.71546 * 7 5 4 33 33 H 1.08993 * 109.46919 * 305.00487 * 8 7 5 34 34 H 1.08994 * 109.47060 * 300.00114 * 9 8 7 35 35 H 1.09002 * 109.46674 * 60.00381 * 9 8 7 36 36 H 1.09003 * 109.46739 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47110 * 299.99929 * 10 8 7 38 38 H 1.09002 * 109.46762 * 59.99720 * 10 8 7 39 39 H 1.08999 * 109.47016 * 180.02562 * 10 8 7 40 40 H 1.09005 * 109.58963 * 246.20513 * 14 13 11 41 41 H 1.09003 * 109.58352 * 6.62876 * 14 13 11 42 42 H 1.09007 * 109.63158 * 294.86918 * 15 14 13 43 43 H 1.09001 * 109.43761 * 174.72492 * 15 14 13 44 44 H 1.08999 * 109.46007 * 58.53589 * 16 15 14 45 45 H 0.97004 * 119.99478 * 179.97438 * 20 19 17 46 46 H 1.08993 * 109.49701 * 301.41300 * 25 16 15 47 47 H 1.09004 * 109.49740 * 181.31419 * 25 16 15 48 48 H 1.09005 * 109.58025 * 353.37063 * 26 13 11 49 49 H 1.08999 * 109.58919 * 113.65337 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0094 -0.3252 0.5888 7 6 4.1553 -1.0426 -1.4373 8 6 3.7875 0.3355 -1.9910 9 6 4.5302 1.4165 -1.2029 10 6 4.1857 0.4154 -3.4661 11 6 4.1483 -2.4547 0.6011 12 8 3.4085 -3.4115 0.6906 13 7 5.4198 -2.5426 1.0393 14 6 6.2963 -1.3635 1.0350 15 6 6.8743 -1.1792 2.4464 16 6 7.5650 -2.4737 2.8816 17 6 8.1657 -2.2861 4.2508 18 1 7.8490 -2.9146 5.0701 19 6 9.1196 -1.3123 4.4577 20 7 9.5048 -0.5469 3.4601 21 14 9.8637 -1.0793 6.1551 22 1 11.0683 -1.9373 6.2896 23 1 10.2470 0.3438 6.3365 24 1 8.8675 -1.4593 7.1887 25 6 6.5411 -3.6104 2.9253 26 6 5.9577 -3.8209 1.5246 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6958 -2.0073 0.0013 31 1 3.6969 -1.8159 -2.0536 32 1 5.2387 -1.1621 -1.4504 33 1 2.7129 0.4903 -1.8958 34 1 4.2465 1.3596 -0.1521 35 1 5.6050 1.2617 -1.2981 36 1 4.2678 2.3983 -1.5971 37 1 5.2605 0.2606 -3.5612 38 1 3.6567 -0.3548 -4.0274 39 1 3.9241 1.3973 -3.8603 40 1 7.1070 -1.5133 0.3219 41 1 5.7203 -0.4810 0.7564 42 1 6.0701 -0.9438 3.1436 43 1 7.5992 -0.3652 2.4380 44 1 8.3528 -2.7218 2.1703 45 1 10.1757 0.1385 3.6057 46 1 5.7402 -3.3520 3.6180 47 1 7.0288 -4.5268 3.2578 48 1 5.1581 -4.5604 1.5691 49 1 6.7395 -4.1683 0.8492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599744357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:00 Heat of formation + Delta-G solvation = -93.682964 kcal Electronic energy + Delta-G solvation = -27719.617990 eV Core-core repulsion = 24066.813144 eV Total energy + Delta-G solvation = -3652.804846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.68827 -39.21404 -36.97961 -36.39119 -34.14235 -33.59156 -31.61982 -30.62143 -30.06181 -28.45033 -27.03046 -26.31195 -24.57082 -22.82477 -22.32163 -20.61344 -19.98559 -19.89550 -18.53319 -17.48005 -16.52934 -16.43694 -16.09366 -15.85190 -15.05699 -14.75370 -14.55634 -14.51724 -13.87413 -13.68672 -13.49991 -13.16423 -13.01291 -12.85265 -12.81434 -12.52166 -12.37497 -12.20812 -12.08048 -12.01110 -11.71635 -11.59458 -11.31265 -10.97221 -10.91511 -10.67620 -10.66029 -10.49417 -10.40036 -10.13932 -9.83937 -9.75479 -9.48944 -9.21745 -9.04477 -8.96517 -8.41181 -8.10854 -6.05780 -4.11964 2.55697 2.75111 2.97193 3.26996 3.34405 3.37670 3.52376 4.39088 4.51897 4.74264 4.85957 4.93594 5.04569 5.05910 5.21279 5.23798 5.24823 5.48694 5.51205 5.61131 5.68667 5.71606 5.75105 5.80975 5.86525 5.91154 6.00540 6.02021 6.06176 6.07870 6.20909 6.26542 6.34853 6.39642 6.49229 6.59249 6.60798 6.81209 6.97212 7.07916 7.22586 7.48760 7.62341 7.78074 7.87614 8.00016 8.18857 8.34950 8.36831 8.91228 9.53507 10.99789 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.003760 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.163283 B = 7444.209347 C = 7797.457259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.535 6.535 4 N -0.712 5.712 5 C 0.123 3.877 6 H 0.117 0.883 7 C -0.118 4.118 8 C -0.091 4.091 9 C -0.142 4.142 10 C -0.147 4.147 11 C 0.509 3.491 12 O -0.558 6.558 13 N -0.591 5.591 14 C 0.097 3.903 15 C -0.124 4.124 16 C 0.049 3.951 17 C -0.513 4.513 18 H 0.055 0.945 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.123 4.123 26 C 0.111 3.889 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.408 0.592 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.106 0.894 44 H 0.028 0.972 45 H 0.261 0.739 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.527 0.566 -11.484 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.413 6.413 4 N -0.366 5.366 5 C 0.015 3.985 6 H 0.134 0.866 7 C -0.157 4.157 8 C -0.109 4.109 9 C -0.199 4.199 10 C -0.204 4.204 11 C 0.296 3.704 12 O -0.438 6.438 13 N -0.323 5.323 14 C -0.025 4.025 15 C -0.162 4.162 16 C 0.030 3.970 17 C -0.551 4.551 18 H 0.073 0.927 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.161 4.161 26 C -0.011 4.011 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.245 0.755 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.124 0.876 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.097 0.903 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.329 0.966 -11.459 17.604 hybrid contribution 0.342 -0.240 0.979 1.064 sum -12.987 0.726 -10.480 16.704 Atomic orbital electron populations 1.21868 0.91725 1.04678 1.04810 1.20762 0.90536 0.83515 0.75627 1.90742 1.70167 1.31260 1.49098 1.45902 1.05977 1.09580 1.75180 1.20989 0.81680 0.97586 0.98282 0.86588 1.21996 1.01785 0.98417 0.93539 1.21145 1.01491 0.93913 0.94394 1.21854 0.98799 0.97691 1.01536 1.21857 1.01333 1.01188 0.96024 1.20456 0.82257 0.89390 0.78322 1.90615 1.55586 1.39405 1.58225 1.48199 1.11120 1.12077 1.60867 1.22301 0.92957 0.85699 1.01508 1.22111 0.99572 1.03773 0.90748 1.18639 0.91966 0.89423 0.96959 1.21191 1.21455 1.17318 0.95173 0.92708 1.24949 0.96419 0.95780 0.96733 1.69826 1.31280 1.21187 1.30690 0.86618 0.79509 0.77302 0.84722 1.20710 1.21214 1.19989 1.22005 0.99569 1.00951 0.93585 1.21747 0.98012 0.84539 0.96779 0.88868 0.88922 0.90291 0.75491 0.91351 0.90312 0.90490 0.91101 0.93452 0.93254 0.92752 0.93256 0.92844 0.91523 0.91135 0.94193 0.87576 0.95388 0.92927 0.92932 0.92044 0.90291 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.30 36.01 0.37 -0.92 16 2 C 0.51 5.96 6.58 -10.98 -0.07 5.89 16 3 O -0.54 -7.90 12.21 5.56 0.07 -7.83 16 4 N -0.71 -8.61 5.00 -54.93 -0.27 -8.89 16 5 C 0.12 1.70 1.72 -69.08 -0.12 1.58 16 6 H 0.12 1.77 4.14 -51.93 -0.21 1.56 16 7 C -0.12 -1.46 4.15 -26.73 -0.11 -1.57 16 8 C -0.09 -1.09 2.38 -90.62 -0.22 -1.30 16 9 C -0.14 -1.84 8.11 37.16 0.30 -1.54 16 10 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 11 C 0.51 8.37 6.95 -10.98 -0.08 8.30 16 12 O -0.56 -10.20 15.31 5.56 0.09 -10.11 16 13 N -0.59 -10.16 2.97 -172.50 -0.51 -10.67 16 14 C 0.10 1.69 5.59 -3.49 -0.02 1.67 16 15 C -0.12 -2.68 5.17 -26.39 -0.14 -2.82 16 16 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 17 C -0.51 -13.51 8.56 -34.44 -0.29 -13.81 16 18 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 19 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 20 N -0.89 -24.16 11.30 55.43 0.63 -23.53 16 21 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 26 C 0.11 1.95 6.44 -3.71 -0.02 1.93 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.41 4.56 7.73 -40.82 -0.32 4.24 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.98 7.34 -51.92 -0.38 0.60 16 33 H 0.08 0.99 5.16 -51.93 -0.27 0.72 16 34 H 0.07 1.04 4.90 -51.93 -0.25 0.79 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.11 5.36 -51.93 -0.28 0.83 16 42 H 0.04 0.90 8.14 -51.92 -0.42 0.47 16 43 H 0.11 2.57 6.03 -51.93 -0.31 2.26 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 46 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -29.25 371.28 -8.18 -37.43 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.27 Total: 6.11 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.48 Total: -3.84 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.16 Total: -43.08 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.15 Total: -17.94 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.25 -8.18 -37.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599744357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.251 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds