Wall clock time and date at job start Fri Apr 10 2020 22:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00474 * 2 1 4 4 N 1.34780 * 119.99579 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99756 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.46983 * 35.00696 * 5 4 2 7 7 C 1.52994 * 109.47225 * 275.00073 * 5 4 2 8 8 C 1.53001 * 109.47369 * 66.71520 * 7 5 4 9 9 C 1.53008 * 109.46831 * 64.99694 * 8 7 5 10 10 C 1.52997 * 109.47351 * 184.99859 * 8 7 5 11 11 C 1.50707 * 109.46734 * 154.99922 * 5 4 2 12 12 O 1.21274 * 120.00009 * 17.97651 * 11 5 4 13 13 N 1.34777 * 119.99643 * 197.97661 * 11 5 4 14 14 C 1.46927 * 120.63337 * 4.81841 * 13 11 5 15 15 C 1.53619 * 108.54509 * 126.37019 * 14 13 11 16 16 C 1.53043 * 109.24213 * 54.85535 * 15 14 13 17 17 C 1.50700 * 109.44820 * 178.49837 * 16 15 14 18 18 H 1.08004 * 119.99637 * 120.06672 * 17 16 15 19 19 C 1.37877 * 120.00111 * 300.06075 * 17 16 15 20 20 N 1.31509 * 119.99828 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99850 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47016 * 90.00460 * 21 19 17 23 23 H 1.48497 * 109.47143 * 209.99813 * 21 19 17 24 24 H 1.48495 * 109.47448 * 330.00481 * 21 19 17 25 25 C 1.53041 * 109.53805 * 298.51271 * 16 15 14 26 26 C 1.46927 * 120.63187 * 185.10201 * 13 11 5 27 27 H 1.09001 * 109.47116 * 270.00493 * 1 2 3 28 28 H 1.09004 * 109.46689 * 30.00083 * 1 2 3 29 29 H 1.09002 * 109.47266 * 150.00383 * 1 2 3 30 30 H 0.96996 * 120.00278 * 359.97438 * 4 2 1 31 31 H 1.08997 * 109.47000 * 306.71116 * 7 5 4 32 32 H 1.09009 * 109.47197 * 186.71546 * 7 5 4 33 33 H 1.08993 * 109.46919 * 305.00487 * 8 7 5 34 34 H 1.08994 * 109.47060 * 300.00114 * 9 8 7 35 35 H 1.09002 * 109.46674 * 60.00381 * 9 8 7 36 36 H 1.09003 * 109.46739 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47110 * 299.99929 * 10 8 7 38 38 H 1.09002 * 109.46762 * 59.99720 * 10 8 7 39 39 H 1.08999 * 109.47016 * 180.02562 * 10 8 7 40 40 H 1.09005 * 109.58963 * 246.20513 * 14 13 11 41 41 H 1.09003 * 109.58352 * 6.62876 * 14 13 11 42 42 H 1.09007 * 109.63158 * 294.86918 * 15 14 13 43 43 H 1.09001 * 109.43761 * 174.72492 * 15 14 13 44 44 H 1.08999 * 109.46007 * 58.53589 * 16 15 14 45 45 H 0.97004 * 119.99478 * 179.97438 * 20 19 17 46 46 H 1.08993 * 109.49701 * 301.41300 * 25 16 15 47 47 H 1.09004 * 109.49740 * 181.31419 * 25 16 15 48 48 H 1.09005 * 109.58025 * 353.37063 * 26 13 11 49 49 H 1.08999 * 109.58919 * 113.65337 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0094 -0.3252 0.5888 7 6 4.1553 -1.0426 -1.4373 8 6 3.7875 0.3355 -1.9910 9 6 4.5302 1.4165 -1.2029 10 6 4.1857 0.4154 -3.4661 11 6 4.1483 -2.4547 0.6011 12 8 3.4085 -3.4115 0.6906 13 7 5.4198 -2.5426 1.0393 14 6 6.2963 -1.3635 1.0350 15 6 6.8743 -1.1792 2.4464 16 6 7.5650 -2.4737 2.8816 17 6 8.1657 -2.2861 4.2508 18 1 7.8490 -2.9146 5.0701 19 6 9.1196 -1.3123 4.4577 20 7 9.5048 -0.5469 3.4601 21 14 9.8637 -1.0793 6.1551 22 1 11.0683 -1.9373 6.2896 23 1 10.2470 0.3438 6.3365 24 1 8.8675 -1.4593 7.1887 25 6 6.5411 -3.6104 2.9253 26 6 5.9577 -3.8209 1.5246 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6958 -2.0073 0.0013 31 1 3.6969 -1.8159 -2.0536 32 1 5.2387 -1.1621 -1.4504 33 1 2.7129 0.4903 -1.8958 34 1 4.2465 1.3596 -0.1521 35 1 5.6050 1.2617 -1.2981 36 1 4.2678 2.3983 -1.5971 37 1 5.2605 0.2606 -3.5612 38 1 3.6567 -0.3548 -4.0274 39 1 3.9241 1.3973 -3.8603 40 1 7.1070 -1.5133 0.3219 41 1 5.7203 -0.4810 0.7564 42 1 6.0701 -0.9438 3.1436 43 1 7.5992 -0.3652 2.4380 44 1 8.3528 -2.7218 2.1703 45 1 10.1757 0.1385 3.6057 46 1 5.7402 -3.3520 3.6180 47 1 7.0288 -4.5268 3.2578 48 1 5.1581 -4.5604 1.5691 49 1 6.7395 -4.1683 0.8492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599744357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:59 Heat of formation + Delta-G solvation = -110.768207 kcal Electronic energy + Delta-G solvation = -27720.358861 eV Core-core repulsion = 24066.813144 eV Total energy + Delta-G solvation = -3653.545717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87335 -40.39776 -38.49794 -37.43223 -35.39789 -35.12840 -33.23955 -31.93878 -31.35708 -29.37149 -28.05058 -27.94186 -25.86511 -24.42430 -23.84942 -21.76388 -21.28819 -20.93885 -19.97105 -18.78486 -18.23003 -17.70955 -17.16610 -17.08657 -16.52018 -16.22820 -15.99267 -15.42678 -15.05899 -14.93693 -14.75211 -14.61609 -14.44948 -14.37075 -13.99528 -13.67867 -13.39105 -13.27823 -13.13923 -13.09660 -12.95724 -12.91456 -12.81629 -12.59131 -12.45133 -12.15647 -12.02610 -11.89460 -11.65880 -11.50705 -11.40782 -11.02060 -11.01365 -10.79734 -10.66605 -10.40190 -10.07488 -9.61857 -8.08645 -6.21519 1.39582 1.40864 1.43104 1.51394 1.68471 1.81547 2.40375 2.43536 3.18283 3.27499 3.82256 3.84473 3.96495 4.04888 4.11102 4.21968 4.27536 4.34804 4.43223 4.50400 4.55239 4.56220 4.65648 4.69697 4.71665 4.81510 4.84194 4.87260 4.93794 4.96167 5.07651 5.10075 5.15300 5.17418 5.20242 5.33052 5.37321 5.40520 5.51444 5.53467 5.57964 5.63236 5.97675 6.10712 6.36656 6.39686 6.58061 6.87862 6.98366 7.28759 7.46366 8.94743 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.003760 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.163283 B = 7444.209347 C = 7797.457259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.503 3.497 3 O -0.569 6.569 4 N -0.710 5.710 5 C 0.129 3.871 6 H 0.102 0.898 7 C -0.112 4.112 8 C -0.085 4.085 9 C -0.139 4.139 10 C -0.143 4.143 11 C 0.511 3.489 12 O -0.573 6.573 13 N -0.595 5.595 14 C 0.112 3.888 15 C -0.115 4.115 16 C 0.046 3.954 17 C -0.536 4.536 18 H 0.047 0.953 19 C 0.019 3.981 20 N -0.910 5.910 21 Si 0.946 3.054 22 H -0.276 1.276 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.114 4.114 26 C 0.117 3.883 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.414 0.586 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.023 0.977 43 H 0.080 0.920 44 H 0.008 0.992 45 H 0.261 0.739 46 H 0.039 0.961 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.687 0.216 -12.521 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.292 3.708 3 O -0.448 6.448 4 N -0.365 5.365 5 C 0.020 3.980 6 H 0.119 0.881 7 C -0.151 4.151 8 C -0.104 4.104 9 C -0.196 4.196 10 C -0.200 4.200 11 C 0.299 3.701 12 O -0.454 6.454 13 N -0.327 5.327 14 C -0.010 4.010 15 C -0.154 4.154 16 C 0.028 3.972 17 C -0.574 4.574 18 H 0.065 0.935 19 C -0.180 4.180 20 N -0.550 5.550 21 Si 0.773 3.227 22 H -0.202 1.202 23 H -0.209 1.209 24 H -0.199 1.199 25 C -0.152 4.152 26 C -0.005 4.005 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.252 0.748 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.042 0.958 43 H 0.098 0.902 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.085 0.915 48 H 0.104 0.896 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.510 0.599 -12.501 19.162 hybrid contribution 0.687 -0.138 1.341 1.513 sum -13.823 0.460 -11.160 17.771 Atomic orbital electron populations 1.21890 0.88151 1.06252 1.05952 1.21549 0.92175 0.82665 0.74400 1.90735 1.71218 1.32328 1.50558 1.45942 1.05118 1.10209 1.75199 1.20862 0.83020 0.95265 0.98834 0.88060 1.21970 1.01763 0.98940 0.92451 1.21073 1.00843 0.93112 0.95352 1.21811 0.99093 0.98217 1.00478 1.21821 1.01635 1.01889 0.94691 1.20850 0.81557 0.90028 0.77684 1.90605 1.55757 1.40275 1.58782 1.48195 1.11537 1.11717 1.61226 1.22081 0.93468 0.86708 0.98729 1.21871 0.98315 1.02043 0.93146 1.18606 0.92291 0.91298 0.95052 1.21546 1.22033 1.17397 0.96418 0.93504 1.25606 0.96904 0.95646 0.99825 1.69936 1.31534 1.21416 1.32086 0.85737 0.78748 0.77237 0.80999 1.20181 1.20898 1.19902 1.21851 0.98294 0.99857 0.95189 1.21663 0.98524 0.84950 0.95377 0.87780 0.88222 0.87874 0.74774 0.90460 0.90310 0.91217 0.93110 0.93129 0.93315 0.92478 0.92188 0.92400 0.90615 0.89327 0.95816 0.90197 0.97390 0.92925 0.94244 0.91501 0.89642 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 10.30 71.24 0.73 -1.32 16 2 C 0.50 11.10 6.58 87.66 0.58 11.68 16 3 O -0.57 -16.49 12.21 -3.03 -0.04 -16.53 16 4 N -0.71 -16.13 5.00 -446.09 -2.23 -18.36 16 5 C 0.13 3.44 1.72 44.25 0.08 3.51 16 6 H 0.10 3.07 4.14 -2.39 -0.01 3.06 16 7 C -0.11 -2.58 4.15 30.59 0.13 -2.45 16 8 C -0.09 -1.91 2.38 -10.79 -0.03 -1.94 16 9 C -0.14 -3.52 8.11 71.98 0.58 -2.94 16 10 C -0.14 -2.64 9.19 71.98 0.66 -1.98 16 11 C 0.51 16.15 6.95 87.66 0.61 16.76 16 12 O -0.57 -20.02 15.31 -3.01 -0.05 -20.06 16 13 N -0.60 -19.89 2.97 -818.05 -2.43 -22.31 16 14 C 0.11 3.86 5.59 86.51 0.48 4.34 16 15 C -0.12 -5.10 5.17 30.82 0.16 -4.94 16 16 C 0.05 2.18 2.06 -11.51 -0.02 2.16 16 17 C -0.54 -28.73 8.56 25.60 0.22 -28.51 16 18 H 0.05 2.52 7.74 -2.91 -0.02 2.49 16 19 C 0.02 1.04 5.30 84.66 0.45 1.49 16 20 N -0.91 -50.09 11.30 21.45 0.24 -49.85 16 21 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C -0.11 -4.55 5.30 30.67 0.16 -4.38 16 26 C 0.12 3.97 6.44 86.36 0.56 4.53 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.41 8.46 7.73 -92.71 -0.72 7.74 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.81 7.34 -2.38 -0.02 1.80 16 33 H 0.07 1.69 5.16 -2.39 -0.01 1.68 16 34 H 0.05 1.50 4.90 -2.39 -0.01 1.49 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.09 2.74 5.36 -2.39 -0.01 2.73 16 42 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.08 3.99 6.03 -2.39 -0.01 3.97 16 44 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 46 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 48 H 0.09 2.83 7.00 -2.38 -0.02 2.82 16 49 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -63.03 371.28 3.10 -59.93 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.22 Total: 26.31 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 5.35 Total: -4.00 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -4.42 Total: -90.52 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.08 Total: -36.59 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -63.03 3.10 -59.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599744357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.838 kcal (2) G-P(sol) polarization free energy of solvation -63.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds