Wall clock time and date at job start Fri Apr 10 2020 22:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 120.00015 * 2 1 4 4 N 1.34777 * 119.99970 * 179.97438 * 2 1 3 5 5 C 1.46495 * 119.99967 * 179.97438 * 4 2 1 6 6 H 1.09003 * 109.47260 * 35.00913 * 5 4 2 7 7 C 1.52999 * 109.47441 * 275.00262 * 5 4 2 8 8 C 1.52994 * 109.46999 * 66.59863 * 7 5 4 9 9 C 1.53005 * 109.47079 * 65.00031 * 8 7 5 10 10 C 1.53005 * 109.47438 * 185.00057 * 8 7 5 11 11 C 1.50710 * 109.46905 * 155.00227 * 5 4 2 12 12 O 1.21279 * 119.99935 * 26.36453 * 11 5 4 13 13 N 1.34779 * 119.99759 * 206.36208 * 11 5 4 14 14 C 1.46927 * 120.63055 * 354.93635 * 13 11 5 15 15 C 1.53197 * 108.77201 * 233.58401 * 14 13 11 16 16 C 1.53042 * 109.31128 * 305.36483 * 15 14 13 17 17 C 1.53037 * 109.53612 * 61.36689 * 16 15 14 18 18 H 1.08998 * 109.49989 * 58.62006 * 17 16 15 19 19 C 1.50708 * 109.49614 * 178.67920 * 17 16 15 20 20 H 1.08006 * 119.99442 * 120.00044 * 19 17 16 21 21 C 1.37867 * 120.00157 * 300.27507 * 19 17 16 22 22 N 1.31519 * 120.00286 * 359.72921 * 21 19 17 23 23 Si 1.86802 * 119.99965 * 179.72186 * 21 19 17 24 24 H 1.48495 * 109.47197 * 60.00278 * 23 21 19 25 25 H 1.48508 * 109.46980 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47289 * 299.99876 * 23 21 19 27 27 C 1.46923 * 120.62599 * 174.91024 * 13 11 5 28 28 H 1.09001 * 109.47516 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47155 * 300.00049 * 1 2 3 30 30 H 1.08997 * 109.47320 * 60.00052 * 1 2 3 31 31 H 0.96999 * 119.99680 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.47262 * 186.59820 * 7 5 4 33 33 H 1.09000 * 109.46859 * 306.59973 * 7 5 4 34 34 H 1.09005 * 109.47532 * 305.00260 * 8 7 5 35 35 H 1.08994 * 109.47118 * 299.99762 * 9 8 7 36 36 H 1.09002 * 109.46873 * 60.00506 * 9 8 7 37 37 H 1.09002 * 109.46868 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.46856 * 59.99645 * 10 8 7 39 39 H 1.09000 * 109.47203 * 180.02562 * 10 8 7 40 40 H 1.09005 * 109.46925 * 300.00575 * 10 8 7 41 41 H 1.08996 * 109.58319 * 113.79922 * 14 13 11 42 42 H 1.08999 * 109.58893 * 353.37104 * 14 13 11 43 43 H 1.08997 * 109.49510 * 185.41417 * 15 14 13 44 44 H 1.08992 * 109.52408 * 65.33139 * 15 14 13 45 45 H 1.09005 * 109.46248 * 301.34687 * 16 15 14 46 46 H 1.09005 * 109.45880 * 181.38769 * 16 15 14 47 47 H 0.96996 * 120.00600 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.59314 * 6.62539 * 27 13 11 49 49 H 1.09003 * 109.58593 * 246.20067 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0094 -0.3251 0.5888 7 6 4.1553 -1.0424 -1.4373 8 6 3.7850 0.3346 -1.9918 9 6 4.5254 1.4175 -1.2044 10 6 4.1833 0.4144 -3.4670 11 6 4.1483 -2.4546 0.6011 12 8 3.4632 -3.4542 0.5534 13 7 5.3592 -2.4951 1.1916 14 6 6.2467 -1.3246 1.1605 15 6 7.6082 -1.7528 0.6037 16 6 8.1447 -2.9268 1.4260 17 6 7.1827 -4.1118 1.3143 18 1 7.0751 -4.3956 0.2674 19 6 7.7280 -5.2779 2.0980 20 1 7.1571 -5.6936 2.9151 21 6 8.9581 -5.8104 1.7754 22 7 9.6534 -5.3041 0.7804 23 14 9.6375 -7.2508 2.7517 24 1 8.7081 -8.4039 2.6442 25 1 10.9663 -7.6331 2.2101 26 1 9.7785 -6.8599 4.1774 27 6 5.8165 -3.7104 1.8791 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6958 -2.0072 0.0005 32 1 5.2389 -1.1598 -1.4502 33 1 3.6985 -1.8170 -2.0532 34 1 2.7099 0.4874 -1.8970 35 1 4.2416 1.3608 -0.1536 36 1 5.6005 1.2648 -1.2993 37 1 4.2619 2.3985 -1.5998 38 1 3.6558 -0.3571 -4.0279 39 1 3.9198 1.3955 -3.8619 40 1 5.2584 0.2615 -3.5618 41 1 6.3714 -0.9337 2.1703 42 1 5.8153 -0.5557 0.5195 43 1 8.3053 -0.9172 0.6648 44 1 7.4966 -2.0583 -0.4366 45 1 8.2331 -2.6281 2.4706 46 1 9.1246 -3.2175 1.0474 47 1 10.5187 -5.6790 0.5532 48 1 5.1012 -4.5157 1.7123 49 1 5.9061 -3.5140 2.9475 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600092845.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:02 Heat of formation + Delta-G solvation = -93.795440 kcal Electronic energy + Delta-G solvation = -27719.545262 eV Core-core repulsion = 24066.735539 eV Total energy + Delta-G solvation = -3652.809723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68880 -39.20583 -36.96394 -36.38772 -34.16495 -33.56660 -31.49458 -30.96052 -30.11985 -28.45313 -27.07455 -25.44133 -25.05419 -23.53365 -21.75978 -20.67303 -20.04567 -19.90147 -18.46725 -17.51347 -16.52662 -16.43775 -16.10916 -15.85300 -14.89320 -14.72381 -14.59630 -14.47683 -13.89532 -13.69746 -13.53273 -13.33817 -13.16464 -12.85174 -12.78609 -12.47470 -12.34199 -12.18516 -12.09145 -12.05054 -11.96248 -11.65753 -10.99624 -10.94908 -10.87834 -10.78578 -10.69630 -10.47680 -10.36682 -9.99356 -9.88729 -9.87450 -9.55114 -9.39409 -9.06896 -8.85863 -8.42161 -7.99591 -6.04839 -4.12381 2.51225 2.76340 3.01083 3.29373 3.34025 3.36855 3.58363 4.39630 4.50672 4.71710 4.85872 4.92575 5.00614 5.04273 5.19075 5.20736 5.23931 5.31519 5.48105 5.56037 5.58634 5.65670 5.73738 5.74084 5.78504 5.88940 5.98767 6.02822 6.06784 6.21659 6.27982 6.31308 6.35721 6.42525 6.45654 6.51721 6.59952 6.74333 6.87235 7.11490 7.28246 7.45207 7.65155 7.82193 7.91858 8.03665 8.14070 8.31672 8.45527 8.90694 9.52724 11.00541 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.003570 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.961388 B = 7841.190087 C = 8491.919204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.509 3.491 3 O -0.539 6.539 4 N -0.711 5.711 5 C 0.124 3.876 6 H 0.111 0.889 7 C -0.121 4.121 8 C -0.091 4.091 9 C -0.141 4.141 10 C -0.147 4.147 11 C 0.507 3.493 12 O -0.549 6.549 13 N -0.595 5.595 14 C 0.102 3.898 15 C -0.134 4.134 16 C -0.113 4.113 17 C 0.041 3.959 18 H 0.030 0.970 19 C -0.516 4.516 20 H 0.056 0.944 21 C 0.064 3.936 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.116 3.884 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.409 0.591 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.097 0.903 47 H 0.261 0.739 48 H 0.080 0.920 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.963 12.668 -4.029 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.297 3.703 3 O -0.417 6.417 4 N -0.365 5.365 5 C 0.016 3.984 6 H 0.129 0.871 7 C -0.160 4.160 8 C -0.109 4.109 9 C -0.198 4.198 10 C -0.205 4.205 11 C 0.293 3.707 12 O -0.428 6.428 13 N -0.326 5.326 14 C -0.021 4.021 15 C -0.172 4.172 16 C -0.151 4.151 17 C 0.022 3.978 18 H 0.048 0.952 19 C -0.555 4.555 20 H 0.075 0.925 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.005 4.005 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.246 0.754 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.115 0.885 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.698 12.852 -4.127 18.532 hybrid contribution 0.340 -1.224 0.495 1.363 sum -12.358 11.628 -3.632 17.353 Atomic orbital electron populations 1.21836 0.91721 1.04298 1.05127 1.20761 0.90533 0.83497 0.75552 1.90725 1.70159 1.31279 1.49530 1.45975 1.06049 1.09609 1.74878 1.21008 0.81662 0.97403 0.98366 0.87139 1.22027 1.01929 0.98397 0.93652 1.21141 1.01410 0.93885 0.94463 1.21849 0.98695 0.97794 1.01426 1.21862 1.01457 1.01175 0.95988 1.20432 0.82025 0.89680 0.78589 1.90650 1.56953 1.35909 1.59269 1.48265 1.15157 1.15812 1.53369 1.21899 0.91785 0.87146 1.01252 1.21994 0.94434 1.00012 1.00726 1.21645 1.03417 0.93007 0.97039 1.18962 0.88360 0.93417 0.97073 0.95208 1.21028 1.03238 1.14697 1.16488 0.92541 1.24926 0.96818 0.96916 0.95066 1.69855 1.13332 1.41255 1.28263 0.86638 0.78113 0.82874 0.80265 1.20221 1.21295 1.20254 1.22060 0.98981 0.84527 0.94903 0.90555 0.88782 0.88816 0.75387 0.90232 0.91033 0.90523 0.91237 0.93605 0.93279 0.93110 0.92903 0.92696 0.91664 0.90756 0.92251 0.92291 0.94531 0.88507 0.92880 0.90198 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.39 36.00 0.37 -0.82 16 2 C 0.51 5.64 6.57 -10.99 -0.07 5.57 16 3 O -0.54 -7.39 12.20 5.55 0.07 -7.33 16 4 N -0.71 -8.42 5.02 -54.93 -0.28 -8.69 16 5 C 0.12 1.69 1.70 -69.08 -0.12 1.57 16 6 H 0.11 1.52 4.37 -51.93 -0.23 1.29 16 7 C -0.12 -1.55 4.03 -26.73 -0.11 -1.66 16 8 C -0.09 -1.06 2.38 -90.62 -0.22 -1.28 16 9 C -0.14 -1.66 8.10 37.16 0.30 -1.36 16 10 C -0.15 -1.55 9.19 37.16 0.34 -1.21 16 11 C 0.51 8.70 6.89 -10.98 -0.08 8.62 16 12 O -0.55 -10.91 15.45 5.56 0.09 -10.82 16 13 N -0.59 -10.63 2.97 -172.76 -0.51 -11.14 16 14 C 0.10 1.56 5.96 -3.71 -0.02 1.54 16 15 C -0.13 -2.31 6.08 -26.61 -0.16 -2.47 16 16 C -0.11 -2.47 4.96 -26.69 -0.13 -2.61 16 17 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 18 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 19 C -0.52 -13.73 8.57 -34.44 -0.30 -14.02 16 20 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 22 N -0.89 -24.58 11.30 55.43 0.63 -23.96 16 23 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.12 2.44 5.66 -3.71 -0.02 2.42 16 28 H 0.08 0.42 7.91 -51.93 -0.41 0.01 16 29 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.41 4.61 7.64 -40.82 -0.31 4.30 16 32 H 0.08 1.06 7.34 -51.93 -0.38 0.68 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.97 5.16 -51.93 -0.27 0.70 16 35 H 0.07 0.90 4.89 -51.93 -0.25 0.65 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.97 4.96 -51.93 -0.26 0.71 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.10 2.41 6.03 -51.93 -0.31 2.10 16 47 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.08 1.79 7.00 -51.93 -0.36 1.43 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -29.86 371.18 -8.19 -38.05 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.25 Total: 5.77 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.51 Total: -3.30 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.16 Total: -43.79 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.15 Total: -18.15 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.86 -8.19 -38.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600092845.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.746 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds