Wall clock time and date at job start Fri Apr 10 2020 22:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 120.00015 * 2 1 4 4 N 1.34777 * 119.99970 * 179.97438 * 2 1 3 5 5 C 1.46495 * 119.99967 * 179.97438 * 4 2 1 6 6 H 1.09003 * 109.47260 * 35.00913 * 5 4 2 7 7 C 1.52999 * 109.47441 * 275.00262 * 5 4 2 8 8 C 1.52994 * 109.46999 * 66.59863 * 7 5 4 9 9 C 1.53005 * 109.47079 * 65.00031 * 8 7 5 10 10 C 1.53005 * 109.47438 * 185.00057 * 8 7 5 11 11 C 1.50710 * 109.46905 * 155.00227 * 5 4 2 12 12 O 1.21279 * 119.99935 * 26.36453 * 11 5 4 13 13 N 1.34779 * 119.99759 * 206.36208 * 11 5 4 14 14 C 1.46927 * 120.63055 * 354.93635 * 13 11 5 15 15 C 1.53197 * 108.77201 * 233.58401 * 14 13 11 16 16 C 1.53042 * 109.31128 * 305.36483 * 15 14 13 17 17 C 1.53037 * 109.53612 * 61.36689 * 16 15 14 18 18 H 1.08998 * 109.49989 * 58.62006 * 17 16 15 19 19 C 1.50708 * 109.49614 * 178.67920 * 17 16 15 20 20 H 1.08006 * 119.99442 * 120.00044 * 19 17 16 21 21 C 1.37867 * 120.00157 * 300.27507 * 19 17 16 22 22 N 1.31519 * 120.00286 * 359.72921 * 21 19 17 23 23 Si 1.86802 * 119.99965 * 179.72186 * 21 19 17 24 24 H 1.48495 * 109.47197 * 60.00278 * 23 21 19 25 25 H 1.48508 * 109.46980 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47289 * 299.99876 * 23 21 19 27 27 C 1.46923 * 120.62599 * 174.91024 * 13 11 5 28 28 H 1.09001 * 109.47516 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47155 * 300.00049 * 1 2 3 30 30 H 1.08997 * 109.47320 * 60.00052 * 1 2 3 31 31 H 0.96999 * 119.99680 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.47262 * 186.59820 * 7 5 4 33 33 H 1.09000 * 109.46859 * 306.59973 * 7 5 4 34 34 H 1.09005 * 109.47532 * 305.00260 * 8 7 5 35 35 H 1.08994 * 109.47118 * 299.99762 * 9 8 7 36 36 H 1.09002 * 109.46873 * 60.00506 * 9 8 7 37 37 H 1.09002 * 109.46868 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.46856 * 59.99645 * 10 8 7 39 39 H 1.09000 * 109.47203 * 180.02562 * 10 8 7 40 40 H 1.09005 * 109.46925 * 300.00575 * 10 8 7 41 41 H 1.08996 * 109.58319 * 113.79922 * 14 13 11 42 42 H 1.08999 * 109.58893 * 353.37104 * 14 13 11 43 43 H 1.08997 * 109.49510 * 185.41417 * 15 14 13 44 44 H 1.08992 * 109.52408 * 65.33139 * 15 14 13 45 45 H 1.09005 * 109.46248 * 301.34687 * 16 15 14 46 46 H 1.09005 * 109.45880 * 181.38769 * 16 15 14 47 47 H 0.96996 * 120.00600 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.59314 * 6.62539 * 27 13 11 49 49 H 1.09003 * 109.58593 * 246.20067 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0094 -0.3251 0.5888 7 6 4.1553 -1.0424 -1.4373 8 6 3.7850 0.3346 -1.9918 9 6 4.5254 1.4175 -1.2044 10 6 4.1833 0.4144 -3.4670 11 6 4.1483 -2.4546 0.6011 12 8 3.4632 -3.4542 0.5534 13 7 5.3592 -2.4951 1.1916 14 6 6.2467 -1.3246 1.1605 15 6 7.6082 -1.7528 0.6037 16 6 8.1447 -2.9268 1.4260 17 6 7.1827 -4.1118 1.3143 18 1 7.0751 -4.3956 0.2674 19 6 7.7280 -5.2779 2.0980 20 1 7.1571 -5.6936 2.9151 21 6 8.9581 -5.8104 1.7754 22 7 9.6534 -5.3041 0.7804 23 14 9.6375 -7.2508 2.7517 24 1 8.7081 -8.4039 2.6442 25 1 10.9663 -7.6331 2.2101 26 1 9.7785 -6.8599 4.1774 27 6 5.8165 -3.7104 1.8791 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6958 -2.0072 0.0005 32 1 5.2389 -1.1598 -1.4502 33 1 3.6985 -1.8170 -2.0532 34 1 2.7099 0.4874 -1.8970 35 1 4.2416 1.3608 -0.1536 36 1 5.6005 1.2648 -1.2993 37 1 4.2619 2.3985 -1.5998 38 1 3.6558 -0.3571 -4.0279 39 1 3.9198 1.3955 -3.8619 40 1 5.2584 0.2615 -3.5618 41 1 6.3714 -0.9337 2.1703 42 1 5.8153 -0.5557 0.5195 43 1 8.3053 -0.9172 0.6648 44 1 7.4966 -2.0583 -0.4366 45 1 8.2331 -2.6281 2.4706 46 1 9.1246 -3.2175 1.0474 47 1 10.5187 -5.6790 0.5532 48 1 5.1012 -4.5157 1.7123 49 1 5.9061 -3.5140 2.9475 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600092845.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:01 Heat of formation + Delta-G solvation = -111.892011 kcal Electronic energy + Delta-G solvation = -27720.329989 eV Core-core repulsion = 24066.735539 eV Total energy + Delta-G solvation = -3653.594449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.87605 -40.39298 -38.48829 -37.43218 -35.39023 -35.14723 -33.15483 -32.25787 -31.39514 -29.35692 -27.96393 -27.14982 -26.58371 -24.83079 -23.37903 -21.82748 -21.33158 -20.92263 -19.92451 -18.80078 -18.22043 -17.70138 -17.22221 -17.00604 -16.60017 -16.07362 -15.91607 -15.47412 -15.13347 -15.05296 -14.73973 -14.60466 -14.54985 -14.35625 -13.87603 -13.66506 -13.56867 -13.40768 -13.11369 -12.96935 -12.91060 -12.85000 -12.71902 -12.64335 -12.55516 -11.98725 -11.91178 -11.85551 -11.67626 -11.61029 -11.43331 -11.27583 -10.90077 -10.79247 -10.69116 -10.42570 -10.08594 -9.56151 -8.10286 -6.25527 1.40199 1.42344 1.43198 1.50587 1.68117 1.82065 2.40426 2.46653 3.16406 3.27475 3.82484 3.83939 3.96082 4.02173 4.07150 4.19453 4.23768 4.33595 4.49955 4.51249 4.53655 4.57652 4.66701 4.71328 4.75988 4.81934 4.82866 4.88531 4.93838 4.95451 5.06447 5.10975 5.11105 5.15315 5.23193 5.32324 5.37339 5.45319 5.51948 5.53463 5.59059 5.61170 5.92901 6.12832 6.33842 6.42619 6.56458 6.83165 7.02820 7.26493 7.42702 8.93087 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.003570 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.961388 B = 7841.190087 C = 8491.919204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.506 3.494 3 O -0.565 6.565 4 N -0.712 5.712 5 C 0.136 3.864 6 H 0.116 0.884 7 C -0.117 4.117 8 C -0.084 4.084 9 C -0.138 4.138 10 C -0.146 4.146 11 C 0.504 3.496 12 O -0.580 6.580 13 N -0.600 5.600 14 C 0.105 3.895 15 C -0.125 4.125 16 C -0.106 4.106 17 C 0.042 3.958 18 H -0.012 1.012 19 C -0.539 4.539 20 H 0.053 0.947 21 C 0.018 3.982 22 N -0.912 5.912 23 Si 0.954 3.046 24 H -0.276 1.276 25 H -0.284 1.284 26 H -0.268 1.268 27 C 0.129 3.871 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.412 0.588 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.261 0.739 48 H 0.058 0.942 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.873 14.230 -3.818 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.296 3.704 3 O -0.445 6.445 4 N -0.366 5.366 5 C 0.028 3.972 6 H 0.133 0.867 7 C -0.156 4.156 8 C -0.103 4.103 9 C -0.195 4.195 10 C -0.203 4.203 11 C 0.292 3.708 12 O -0.460 6.460 13 N -0.330 5.330 14 C -0.017 4.017 15 C -0.163 4.163 16 C -0.144 4.144 17 C 0.023 3.977 18 H 0.006 0.994 19 C -0.577 4.577 20 H 0.072 0.928 21 C -0.181 4.181 22 N -0.551 5.551 23 Si 0.779 3.221 24 H -0.201 1.201 25 H -0.209 1.209 26 H -0.193 1.193 27 C 0.007 3.993 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.250 0.750 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.626 14.435 -3.918 20.233 hybrid contribution 0.599 -1.732 0.404 1.877 sum -13.026 12.703 -3.514 18.531 Atomic orbital electron populations 1.21870 0.88315 1.05851 1.06221 1.21486 0.92057 0.82565 0.74336 1.90714 1.71062 1.32020 1.50669 1.46051 1.05161 1.10290 1.75145 1.20850 0.83026 0.94908 0.98446 0.86680 1.22008 1.01507 0.99091 0.93005 1.21074 1.01032 0.92935 0.95216 1.21813 0.99125 0.97842 1.00681 1.21843 1.01521 1.01846 0.95078 1.21089 0.81382 0.90620 0.77724 1.90630 1.57751 1.37432 1.60225 1.48294 1.15992 1.15465 1.53290 1.22056 0.90159 0.86579 1.02910 1.21890 0.96214 0.99064 0.99143 1.21435 1.01295 0.93952 0.97737 1.18863 0.90638 0.93929 0.94290 0.99383 1.21409 1.03618 1.15922 1.16783 0.92847 1.25665 0.97130 0.99307 0.95994 1.69994 1.13485 1.42298 1.29360 0.85682 0.77373 0.79773 0.79245 1.20099 1.20902 1.19339 1.21628 0.96709 0.85586 0.95365 0.88852 0.87727 0.87489 0.75035 0.90693 0.91675 0.91131 0.92287 0.92817 0.93054 0.92890 0.91955 0.92631 0.89798 0.87908 0.89200 0.93443 0.94360 0.91770 0.92944 0.92344 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.39 71.23 0.74 -1.12 16 2 C 0.51 10.24 6.57 87.66 0.58 10.82 16 3 O -0.57 -14.46 12.20 -3.04 -0.04 -14.50 16 4 N -0.71 -15.89 5.02 -446.09 -2.24 -18.13 16 5 C 0.14 3.55 1.70 44.25 0.08 3.62 16 6 H 0.12 2.93 4.37 -2.39 -0.01 2.92 16 7 C -0.12 -2.86 4.03 30.59 0.12 -2.74 16 8 C -0.08 -1.83 2.38 -10.79 -0.03 -1.85 16 9 C -0.14 -2.95 8.10 71.98 0.58 -2.37 16 10 C -0.15 -2.78 9.19 71.98 0.66 -2.12 16 11 C 0.50 17.13 6.89 87.66 0.60 17.74 16 12 O -0.58 -23.28 15.45 -3.03 -0.05 -23.33 16 13 N -0.60 -21.20 2.97 -818.89 -2.43 -23.63 16 14 C 0.10 3.01 5.96 86.36 0.52 3.52 16 15 C -0.13 -4.19 6.08 30.67 0.19 -4.01 16 16 C -0.11 -4.69 4.96 30.62 0.15 -4.54 16 17 C 0.04 2.08 2.25 -11.46 -0.03 2.06 16 18 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 19 C -0.54 -29.45 8.57 25.60 0.22 -29.23 16 20 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 21 C 0.02 1.00 5.30 84.65 0.45 1.45 16 22 N -0.91 -51.74 11.30 21.44 0.24 -51.49 16 23 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 C 0.13 5.54 5.66 86.36 0.49 6.03 16 28 H 0.09 0.76 7.91 -2.39 -0.02 0.74 16 29 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.41 8.84 7.64 -92.71 -0.71 8.13 16 32 H 0.07 1.90 7.34 -2.39 -0.02 1.88 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.65 5.16 -2.38 -0.01 1.64 16 35 H 0.06 1.40 4.89 -2.39 -0.01 1.39 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.10 2.41 4.96 -2.39 -0.01 2.40 16 43 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.06 3.28 6.03 -2.38 -0.01 3.26 16 47 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 48 H 0.06 2.72 7.00 -2.39 -0.02 2.71 16 49 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -66.30 371.18 3.07 -63.24 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.23 Total: 25.39 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 5.32 Total: -2.75 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -4.43 Total: -93.25 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.08 Total: -37.83 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -66.30 3.07 -63.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600092845.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.656 kcal (2) G-P(sol) polarization free energy of solvation -66.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds