Wall clock time and date at job start Fri Apr 10 2020 22:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21288 * 119.99699 * 2 1 4 4 N 1.34777 * 120.00037 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99819 * 180.02562 * 4 2 1 6 6 H 1.09005 * 109.46978 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47591 * 59.99773 * 5 4 2 8 8 C 1.53005 * 109.46686 * 63.78955 * 7 5 4 9 9 C 1.52999 * 109.46834 * 185.86685 * 8 7 5 10 10 C 1.53000 * 109.47090 * 65.86765 * 8 7 5 11 11 C 1.50708 * 109.47099 * 299.99648 * 5 4 2 12 12 O 1.21281 * 119.99955 * 20.00504 * 11 5 4 13 13 N 1.34772 * 119.99911 * 200.00050 * 11 5 4 14 14 C 1.46928 * 120.63328 * 359.72699 * 13 11 5 15 15 C 1.53618 * 108.54588 * 126.36494 * 14 13 11 16 16 C 1.53048 * 109.24009 * 54.85586 * 15 14 13 17 17 C 1.53041 * 109.53811 * 298.50961 * 16 15 14 18 18 H 1.09001 * 109.52223 * 301.40010 * 17 16 15 19 19 C 1.50698 * 109.49570 * 181.32007 * 17 16 15 20 20 H 1.08002 * 119.99786 * 240.15914 * 19 17 16 21 21 C 1.37870 * 120.00228 * 60.16110 * 19 17 16 22 22 N 1.31513 * 120.00433 * 0.02562 * 21 19 17 23 23 Si 1.86806 * 119.99975 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46922 * 60.00129 * 23 21 19 25 25 H 1.48503 * 109.47167 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47402 * 300.00200 * 23 21 19 27 27 C 1.46924 * 120.63041 * 179.97438 * 13 11 5 28 28 H 1.08997 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47334 * 299.99870 * 1 2 3 30 30 H 1.08999 * 109.46832 * 59.99924 * 1 2 3 31 31 H 0.97001 * 120.00046 * 359.97438 * 4 2 1 32 32 H 1.08998 * 109.46845 * 303.79022 * 7 5 4 33 33 H 1.09002 * 109.47319 * 183.79074 * 7 5 4 34 34 H 1.08999 * 109.47007 * 305.86265 * 8 7 5 35 35 H 1.08997 * 109.47284 * 175.04800 * 9 8 7 36 36 H 1.08998 * 109.47470 * 55.03946 * 9 8 7 37 37 H 1.09006 * 109.47045 * 295.04258 * 9 8 7 38 38 H 1.08999 * 109.46783 * 180.02562 * 10 8 7 39 39 H 1.09003 * 109.46563 * 299.99579 * 10 8 7 40 40 H 1.08991 * 109.47278 * 59.99905 * 10 8 7 41 41 H 1.09000 * 109.58171 * 246.20109 * 14 13 11 42 42 H 1.09004 * 109.58384 * 6.61709 * 14 13 11 43 43 H 1.08999 * 109.63472 * 294.86661 * 15 14 13 44 44 H 1.09001 * 109.43203 * 174.72071 * 15 14 13 45 45 H 1.09000 * 109.45580 * 178.49078 * 16 15 14 46 46 H 1.08994 * 109.46240 * 58.53332 * 16 15 14 47 47 H 0.96994 * 120.00658 * 179.97438 * 22 21 19 48 48 H 1.09009 * 109.58597 * 353.38030 * 27 13 11 49 49 H 1.09002 * 109.58604 * 113.79835 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0092 -2.1948 -0.0010 7 6 4.1555 -0.4467 1.2499 8 6 3.7243 -1.2218 2.4967 9 6 4.1058 -0.4280 3.7478 10 6 4.4271 -2.5806 2.5208 11 6 4.1487 -0.4559 -1.2299 12 8 3.4205 0.3059 -1.8300 13 7 5.4075 -0.6665 -1.6627 14 6 6.3035 -1.5818 -0.9428 15 6 6.8500 -2.6151 -1.9395 16 6 7.5082 -1.8851 -3.1127 17 6 6.4647 -1.0274 -3.8322 18 1 5.6515 -1.6622 -4.1842 19 6 7.1064 -0.3344 -5.0065 20 1 7.1193 0.7444 -5.0557 21 6 7.6769 -1.0776 -6.0179 22 7 7.6608 -2.3912 -5.9583 23 14 8.4717 -0.2184 -7.4739 24 1 9.5803 0.6452 -6.9942 25 1 9.0069 -1.2339 -8.4161 26 1 7.4593 0.6163 -8.1692 27 6 5.9118 0.0191 -2.8603 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6959 -2.0073 -0.0005 32 1 3.7377 0.5594 1.2850 33 1 5.2434 -0.3874 1.2170 34 1 2.6448 -1.3712 2.4763 35 1 3.7214 -0.9366 4.6319 36 1 3.6766 0.5721 3.6885 37 1 5.1913 -0.3542 3.8143 38 1 4.1196 -3.1329 3.4087 39 1 4.1553 -3.1460 1.6294 40 1 5.5065 -2.4311 2.5411 41 1 7.1285 -1.0181 -0.5073 42 1 5.7492 -2.0904 -0.1540 43 1 6.0332 -3.2352 -2.3090 44 1 7.5883 -3.2438 -1.4418 45 1 7.9209 -2.6151 -3.8090 46 1 8.3087 -1.2463 -2.7398 47 1 8.0618 -2.9141 -6.6701 48 1 5.0991 0.5671 -3.3372 49 1 6.7056 0.7109 -2.5783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600092846.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:04 Heat of formation + Delta-G solvation = -111.730462 kcal Electronic energy + Delta-G solvation = -27777.592227 eV Core-core repulsion = 24124.004783 eV Total energy + Delta-G solvation = -3653.587444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80008 -40.07837 -38.20669 -37.64314 -35.34682 -34.98796 -33.09226 -32.22601 -31.40888 -29.21312 -27.95484 -27.12511 -26.49782 -24.76049 -23.34713 -22.21405 -21.33770 -20.53154 -19.72032 -18.74364 -18.39264 -17.61429 -17.19087 -16.64517 -16.45386 -16.03037 -15.85360 -15.44394 -15.11381 -15.05441 -14.73419 -14.55395 -14.50533 -14.25408 -13.75651 -13.62032 -13.54456 -13.30770 -13.17146 -12.98210 -12.88070 -12.78120 -12.69752 -12.61991 -12.59645 -11.97131 -11.86334 -11.74395 -11.68091 -11.59821 -11.46178 -11.28530 -11.00653 -10.80820 -10.52698 -10.43573 -9.85912 -9.44861 -8.12156 -6.27239 1.39585 1.41102 1.48543 1.63141 1.81735 2.14061 2.39774 2.47594 3.13973 3.49138 3.76556 3.90071 3.99038 4.13203 4.16278 4.17376 4.24795 4.36546 4.47429 4.51934 4.57507 4.59581 4.68992 4.71144 4.78653 4.84200 4.86900 4.92214 4.96291 5.05537 5.10203 5.11968 5.12672 5.19411 5.28629 5.35190 5.44187 5.50678 5.51562 5.57151 5.59841 5.61090 5.92546 6.13118 6.34105 6.59592 6.69166 6.81235 7.28046 7.40566 7.51887 8.91239 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018928 B = 0.003779 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.958232 B = 7407.246443 C = 8290.298381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.503 3.497 3 O -0.571 6.571 4 N -0.709 5.709 5 C 0.141 3.859 6 H 0.140 0.860 7 C -0.121 4.121 8 C -0.084 4.084 9 C -0.145 4.145 10 C -0.151 4.151 11 C 0.485 3.515 12 O -0.572 6.572 13 N -0.608 5.608 14 C 0.108 3.892 15 C -0.126 4.126 16 C -0.105 4.105 17 C 0.045 3.955 18 H -0.013 1.013 19 C -0.543 4.543 20 H 0.047 0.953 21 C 0.021 3.979 22 N -0.910 5.910 23 Si 0.953 3.047 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.278 1.278 27 C 0.133 3.867 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.421 0.579 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.049 0.951 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.263 0.737 48 H 0.043 0.957 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 -5.835 20.967 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.291 3.709 3 O -0.449 6.449 4 N -0.364 5.364 5 C 0.032 3.968 6 H 0.157 0.843 7 C -0.159 4.159 8 C -0.102 4.102 9 C -0.203 4.203 10 C -0.208 4.208 11 C 0.273 3.727 12 O -0.451 6.451 13 N -0.341 5.341 14 C -0.014 4.014 15 C -0.164 4.164 16 C -0.143 4.143 17 C 0.026 3.974 18 H 0.005 0.995 19 C -0.581 4.581 20 H 0.065 0.935 21 C -0.179 4.179 22 N -0.549 5.549 23 Si 0.779 3.221 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.204 1.204 27 C 0.010 3.990 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.259 0.741 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.068 0.932 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.996 -4.845 20.561 22.960 hybrid contribution 0.353 0.452 -1.660 1.757 sum -8.643 -4.393 18.901 21.242 Atomic orbital electron populations 1.21827 0.88745 1.06212 1.05202 1.21470 0.91998 0.83244 0.74165 1.90700 1.71598 1.33269 1.49355 1.45702 1.05067 1.09592 1.76038 1.20992 0.82512 1.01674 0.91582 0.84284 1.21957 1.01325 0.99979 0.92668 1.21014 1.00816 0.95673 0.92706 1.21812 1.01729 0.99345 0.97393 1.21956 1.00899 0.95303 1.02686 1.21806 0.81368 0.82515 0.87000 1.90680 1.56765 1.38379 1.59258 1.48344 1.12835 1.45076 1.27844 1.22152 0.93889 0.90943 0.94403 1.21990 1.00433 0.97527 0.96415 1.21416 0.97655 0.99125 0.96152 1.18828 0.93748 0.92773 0.92051 0.99489 1.21407 1.37700 0.92910 1.06113 0.93481 1.25638 0.96363 0.95512 1.00374 1.69980 1.45506 1.05452 1.33964 0.85693 0.78842 0.78373 0.79231 1.19376 1.20393 1.20381 1.21458 0.96750 0.95314 0.85498 0.87342 0.87745 0.89780 0.74107 0.92539 0.90442 0.90836 0.91214 0.94293 0.92355 0.91334 0.91815 0.91963 0.90322 0.86877 0.93209 0.88845 0.91768 0.94648 0.92823 0.93845 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 10.39 71.24 0.74 -1.96 16 2 C 0.50 13.79 6.70 87.66 0.59 14.38 16 3 O -0.57 -22.44 12.96 19.41 0.25 -22.19 16 4 N -0.71 -15.39 4.50 -446.08 -2.01 -17.40 16 5 C 0.14 3.49 2.02 44.25 0.09 3.58 16 6 H 0.14 2.48 4.84 -2.38 -0.01 2.47 16 7 C -0.12 -2.75 3.76 30.60 0.12 -2.63 16 8 C -0.08 -1.27 2.86 -10.79 -0.03 -1.30 16 9 C -0.15 -2.17 9.19 71.98 0.66 -1.51 16 10 C -0.15 -1.62 8.97 71.98 0.65 -0.98 16 11 C 0.49 18.39 6.69 87.66 0.59 18.97 16 12 O -0.57 -27.64 13.09 19.43 0.25 -27.38 16 13 N -0.61 -22.98 2.97 -818.15 -2.43 -25.41 16 14 C 0.11 3.00 5.61 86.51 0.49 3.48 16 15 C -0.13 -4.09 6.10 30.82 0.19 -3.90 16 16 C -0.11 -4.74 4.96 30.62 0.15 -4.59 16 17 C 0.05 2.34 2.25 -11.48 -0.03 2.32 16 18 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 19 C -0.54 -31.04 8.56 25.60 0.22 -30.82 16 20 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 21 C 0.02 1.16 5.30 84.65 0.45 1.60 16 22 N -0.91 -52.24 11.32 21.44 0.24 -52.00 16 23 Si 0.95 44.38 29.54 68.60 2.03 46.40 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 C 0.13 6.24 5.65 86.35 0.49 6.73 16 28 H 0.11 0.98 7.91 -2.39 -0.02 0.96 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.42 5.43 8.67 -92.71 -0.80 4.63 16 32 H 0.06 1.75 6.07 -2.39 -0.01 1.73 16 33 H 0.08 1.70 7.16 -2.39 -0.02 1.68 16 34 H 0.07 1.09 7.56 -2.39 -0.02 1.07 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.59 6.52 -2.39 -0.02 0.57 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.11 2.17 5.16 -2.39 -0.01 2.16 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.06 3.30 6.05 -2.39 -0.01 3.28 16 46 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 48 H 0.04 2.30 7.01 -2.38 -0.02 2.28 16 49 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -81.01 373.56 3.82 -77.19 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.13 Total: 17.40 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 5.35 Total: 3.38 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -4.19 Total: -94.80 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: 0.51 Total: -49.57 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -81.01 3.82 -77.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600092846.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.541 kcal (2) G-P(sol) polarization free energy of solvation -81.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds