Wall clock time and date at job start Fri Apr 10 2020 22:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.52998 * 109.47085 * 64.99642 * 3 2 1 5 5 C 1.53009 * 109.46921 * 185.49526 * 4 3 2 6 6 C 1.53001 * 109.47366 * 185.00010 * 3 2 1 7 7 N 1.46501 * 109.47024 * 63.73114 * 6 3 2 8 8 C 1.46501 * 119.99848 * 264.02919 * 7 6 3 9 9 C 1.50700 * 109.46803 * 263.90312 * 8 7 6 10 10 H 1.07998 * 120.00196 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00088 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99930 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99913 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47485 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46869 * 120.00249 * 13 11 9 16 16 H 1.48504 * 109.47180 * 240.00235 * 13 11 9 17 17 C 1.34778 * 120.00143 * 84.02679 * 7 6 3 18 18 O 1.21286 * 119.99887 * 4.89237 * 17 7 6 19 19 C 1.50697 * 119.99792 * 184.89669 * 17 7 6 20 20 H 1.09000 * 109.39975 * 311.30887 * 19 17 7 21 21 C 1.53075 * 109.39759 * 191.56754 * 19 17 7 22 22 C 1.53344 * 108.42181 * 190.97018 * 21 19 17 23 23 C 1.52737 * 108.82162 * 67.37310 * 22 21 19 24 24 N 1.45752 * 110.58895 * 309.60796 * 23 22 21 25 25 C 1.33362 * 124.10396 * 18.61226 * 24 23 22 26 26 O 1.21281 * 118.24433 * 178.03696 * 25 24 23 27 27 H 1.09000 * 109.47189 * 299.99841 * 1 2 3 28 28 H 1.08997 * 109.47162 * 60.00110 * 1 2 3 29 29 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47295 * 239.99713 * 2 1 3 31 31 H 1.09006 * 109.46988 * 119.99823 * 2 1 3 32 32 H 1.09006 * 109.46676 * 304.99886 * 3 2 1 33 33 H 1.08998 * 109.47414 * 305.49590 * 4 3 2 34 34 H 1.08998 * 109.46822 * 65.49742 * 4 3 2 35 35 H 1.08996 * 109.47108 * 63.93828 * 5 4 3 36 36 H 1.09005 * 109.46693 * 183.94051 * 5 4 3 37 37 H 1.08999 * 109.46750 * 303.93824 * 5 4 3 38 38 H 1.08994 * 109.46755 * 303.72957 * 6 3 2 39 39 H 1.08996 * 109.46862 * 183.72989 * 6 3 2 40 40 H 1.09002 * 109.47120 * 23.89731 * 8 7 6 41 41 H 1.08994 * 109.47183 * 143.90579 * 8 7 6 42 42 H 0.96995 * 120.00082 * 179.97438 * 12 11 9 43 43 H 1.08996 * 109.67254 * 310.70104 * 21 19 17 44 44 H 1.08994 * 109.67293 * 71.20416 * 21 19 17 45 45 H 1.09002 * 109.59958 * 187.28636 * 22 21 19 46 46 H 1.08998 * 109.60747 * 307.60906 * 22 21 19 47 47 H 1.09006 * 109.39506 * 189.17694 * 23 22 21 48 48 H 1.08994 * 109.10382 * 69.85927 * 23 22 21 49 49 H 0.97002 * 117.95022 * 198.89760 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6352 2.1265 1.3073 5 6 2.0243 3.6053 1.2509 6 6 3.5649 1.4444 -0.1257 7 7 3.9491 0.8699 -1.4175 8 6 4.3130 -0.5461 -1.5102 9 6 5.8117 -0.6855 -1.4356 10 1 6.4311 0.1928 -1.3292 11 6 6.3921 -1.9344 -1.5019 12 7 5.6379 -3.0040 -1.6309 13 14 8.2499 -2.1070 -1.4101 14 1 8.8655 -0.7632 -1.2676 15 1 8.6119 -2.9437 -0.2378 16 1 8.7491 -2.7515 -2.6514 17 6 3.9676 1.6441 -2.5206 18 8 3.7530 2.8344 -2.4297 19 6 4.2550 1.0308 -3.8668 20 1 5.1425 0.4020 -3.7961 21 6 4.5016 2.1425 -4.8897 22 6 4.5172 1.5178 -6.2900 23 6 3.1138 1.0133 -6.6201 24 7 2.5984 0.1862 -5.5363 25 6 3.0835 0.1940 -4.2940 26 8 2.5497 -0.5121 -3.4650 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6054 1.9815 -0.8419 33 1 0.5574 2.0394 1.4444 34 1 2.1475 1.6476 2.1417 35 1 1.4593 4.0997 0.4607 36 1 1.7998 4.0767 2.2077 37 1 3.0909 3.6926 1.0441 38 1 3.9965 0.8496 0.6792 39 1 3.9336 2.4679 -0.0592 40 1 3.8557 -1.0935 -0.6860 41 1 3.9572 -0.9514 -2.4574 42 1 6.0463 -3.8825 -1.6780 43 1 3.7039 2.8826 -4.8269 44 1 5.4611 2.6192 -4.6894 45 1 4.8188 2.2675 -7.0216 46 1 5.2186 0.6837 -6.3107 47 1 3.1470 0.4253 -7.5374 48 1 2.4530 1.8675 -6.7670 49 1 1.8589 -0.4103 -5.7317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601040320.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:06 Heat of formation + Delta-G solvation = -92.972686 kcal Electronic energy + Delta-G solvation = -28427.832619 eV Core-core repulsion = 24775.058573 eV Total energy + Delta-G solvation = -3652.774046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51606 -38.58667 -36.82314 -36.17029 -34.31350 -32.67770 -32.34430 -31.37984 -29.73334 -28.18209 -26.67234 -24.99514 -23.48231 -22.90024 -22.46579 -22.05831 -19.79213 -19.16396 -18.01166 -17.05715 -16.65314 -16.38603 -15.71942 -15.59371 -14.79644 -14.43828 -14.35200 -14.06477 -13.91937 -13.88008 -13.55443 -13.44241 -13.16921 -12.83340 -12.59435 -12.26536 -12.15341 -11.67356 -11.59965 -11.48387 -11.35790 -11.22069 -11.07409 -10.97501 -10.91018 -10.79932 -10.66604 -10.53721 -10.25052 -10.10523 -9.90064 -9.84080 -9.55317 -9.14780 -8.92133 -8.81344 -8.34975 -7.44081 -6.05857 -4.13219 2.97665 3.24298 3.26350 3.33305 3.37537 3.72647 4.07757 4.39734 4.82220 4.89958 4.91265 5.05433 5.18944 5.24672 5.28118 5.38317 5.43348 5.48568 5.62752 5.70594 5.73065 5.76230 5.83724 5.90219 5.99143 6.03277 6.05468 6.15350 6.19798 6.23701 6.28185 6.35349 6.41706 6.47337 6.52850 6.62185 6.70785 6.88560 6.98695 7.01657 7.11387 7.51384 7.63387 7.83447 7.90967 8.23677 8.48642 8.61086 8.94395 9.11648 9.52391 10.99357 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.008542 B = 0.007122 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.274033 B = 3930.554147 C = 5671.613523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.097 4.097 4 C -0.117 4.117 5 C -0.152 4.152 6 C 0.123 3.877 7 N -0.573 5.573 8 C 0.215 3.785 9 C -0.542 4.542 10 H 0.057 0.943 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.535 3.465 18 O -0.575 6.575 19 C -0.125 4.125 20 H 0.142 0.858 21 C -0.104 4.104 22 C -0.138 4.138 23 C 0.113 3.887 24 N -0.724 5.724 25 C 0.529 3.471 26 O -0.516 6.516 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.080 0.920 42 H 0.262 0.738 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 7.843 -5.983 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.116 4.116 4 C -0.155 4.155 5 C -0.209 4.209 6 C 0.000 4.000 7 N -0.300 5.300 8 C 0.096 3.904 9 C -0.581 4.581 10 H 0.075 0.925 11 C -0.138 4.138 12 N -0.524 5.524 13 Si 0.717 3.283 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.321 3.679 18 O -0.458 6.458 19 C -0.148 4.148 20 H 0.159 0.841 21 C -0.142 4.142 22 C -0.176 4.176 23 C -0.012 4.012 24 N -0.378 5.378 25 C 0.316 3.684 26 O -0.392 6.392 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.603 7.995 -5.411 11.696 hybrid contribution 0.958 -0.640 -0.075 1.155 sum -5.645 7.355 -5.486 10.773 Atomic orbital electron populations 1.21764 0.96945 1.00808 1.00740 1.21668 0.94824 0.96357 1.03392 1.21527 0.96396 0.96316 0.97408 1.21562 1.00807 0.95455 0.97632 1.21816 1.02110 0.96331 1.00658 1.21420 0.93506 0.99071 0.86046 1.48037 1.62868 1.13102 1.05971 1.20091 0.94420 0.74371 1.01517 1.21707 0.92399 0.92758 1.51212 0.92457 1.24928 0.98015 0.95725 0.95180 1.69972 1.34893 0.98133 1.49421 0.86576 0.85762 0.78204 0.77727 1.19731 1.20923 1.20946 1.19571 0.76933 0.85975 0.85442 1.90576 1.52854 1.15465 1.86856 1.21385 0.99907 0.98647 0.94892 0.84091 1.21489 1.03864 0.96883 0.91992 1.21876 0.96292 1.01560 0.97897 1.21288 0.95605 0.94750 0.89523 1.45409 1.37788 1.44743 1.09889 1.19626 0.84721 0.82247 0.81827 1.90752 1.58070 1.41433 1.48929 0.93390 0.93422 0.93322 0.89539 0.92574 0.91471 0.92071 0.92178 0.93005 0.93491 0.92247 0.90709 0.91170 0.94736 0.90246 0.92815 0.90301 0.90432 0.89811 0.90691 0.90926 0.92051 0.76745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.68 37.16 0.36 -1.86 16 2 C -0.13 -2.25 4.75 -26.73 -0.13 -2.38 16 3 C -0.10 -1.70 2.02 -90.62 -0.18 -1.88 16 4 C -0.12 -1.68 5.27 -26.73 -0.14 -1.82 16 5 C -0.15 -2.08 9.77 37.16 0.36 -1.71 16 6 C 0.12 2.43 4.66 -4.04 -0.02 2.42 16 7 N -0.57 -12.71 2.02 -175.06 -0.35 -13.06 16 8 C 0.22 5.40 3.11 -5.19 -0.02 5.38 16 9 C -0.54 -14.51 8.63 -34.44 -0.30 -14.80 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 13 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.53 11.54 6.60 -10.99 -0.07 11.47 16 18 O -0.58 -12.98 15.40 5.55 0.09 -12.89 16 19 C -0.12 -2.34 2.00 -93.14 -0.19 -2.52 16 20 H 0.14 2.89 6.98 -51.93 -0.36 2.52 16 21 C -0.10 -1.52 4.91 -26.51 -0.13 -1.65 16 22 C -0.14 -1.50 6.01 -26.69 -0.16 -1.66 16 23 C 0.11 1.14 7.16 -4.58 -0.03 1.11 16 24 N -0.72 -10.00 5.45 -61.49 -0.34 -10.33 16 25 C 0.53 9.81 7.04 -11.87 -0.08 9.72 16 26 O -0.52 -11.42 13.49 5.56 0.07 -11.35 16 27 H 0.05 0.64 6.45 -51.93 -0.34 0.31 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.86 5.79 -51.93 -0.30 1.56 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 0.81 6.32 -51.93 -0.33 0.49 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.87 6.33 -51.93 -0.33 0.54 16 38 H 0.07 1.48 8.03 -51.93 -0.42 1.07 16 39 H 0.07 1.38 5.74 -51.93 -0.30 1.08 16 40 H 0.03 0.93 6.88 -51.93 -0.36 0.57 16 41 H 0.08 2.11 4.00 -52.08 -0.21 1.91 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.08 1.20 7.56 -51.93 -0.39 0.81 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.40 4.92 8.80 -40.82 -0.36 4.56 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -31.42 374.24 -8.30 -39.72 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -8.30 Total: 9.49 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.82 Total: 1.45 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.05 Total: -47.90 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.16 Total: -24.24 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.42 -8.30 -39.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601040320.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.251 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds