Wall clock time and date at job start Fri Apr 10 2020 22:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.52998 * 109.47085 * 64.99642 * 3 2 1 5 5 C 1.53009 * 109.46921 * 185.49526 * 4 3 2 6 6 C 1.53001 * 109.47366 * 185.00010 * 3 2 1 7 7 N 1.46501 * 109.47024 * 63.73114 * 6 3 2 8 8 C 1.46501 * 119.99848 * 264.02919 * 7 6 3 9 9 C 1.50700 * 109.46803 * 263.90312 * 8 7 6 10 10 H 1.07998 * 120.00196 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00088 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99930 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99913 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47485 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46869 * 120.00249 * 13 11 9 16 16 H 1.48504 * 109.47180 * 240.00235 * 13 11 9 17 17 C 1.34778 * 120.00143 * 84.02679 * 7 6 3 18 18 O 1.21286 * 119.99887 * 4.89237 * 17 7 6 19 19 C 1.50697 * 119.99792 * 184.89669 * 17 7 6 20 20 H 1.09000 * 109.39975 * 311.30887 * 19 17 7 21 21 C 1.53075 * 109.39759 * 191.56754 * 19 17 7 22 22 C 1.53344 * 108.42181 * 190.97018 * 21 19 17 23 23 C 1.52737 * 108.82162 * 67.37310 * 22 21 19 24 24 N 1.45752 * 110.58895 * 309.60796 * 23 22 21 25 25 C 1.33362 * 124.10396 * 18.61226 * 24 23 22 26 26 O 1.21281 * 118.24433 * 178.03696 * 25 24 23 27 27 H 1.09000 * 109.47189 * 299.99841 * 1 2 3 28 28 H 1.08997 * 109.47162 * 60.00110 * 1 2 3 29 29 H 1.09001 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47295 * 239.99713 * 2 1 3 31 31 H 1.09006 * 109.46988 * 119.99823 * 2 1 3 32 32 H 1.09006 * 109.46676 * 304.99886 * 3 2 1 33 33 H 1.08998 * 109.47414 * 305.49590 * 4 3 2 34 34 H 1.08998 * 109.46822 * 65.49742 * 4 3 2 35 35 H 1.08996 * 109.47108 * 63.93828 * 5 4 3 36 36 H 1.09005 * 109.46693 * 183.94051 * 5 4 3 37 37 H 1.08999 * 109.46750 * 303.93824 * 5 4 3 38 38 H 1.08994 * 109.46755 * 303.72957 * 6 3 2 39 39 H 1.08996 * 109.46862 * 183.72989 * 6 3 2 40 40 H 1.09002 * 109.47120 * 23.89731 * 8 7 6 41 41 H 1.08994 * 109.47183 * 143.90579 * 8 7 6 42 42 H 0.96995 * 120.00082 * 179.97438 * 12 11 9 43 43 H 1.08996 * 109.67254 * 310.70104 * 21 19 17 44 44 H 1.08994 * 109.67293 * 71.20416 * 21 19 17 45 45 H 1.09002 * 109.59958 * 187.28636 * 22 21 19 46 46 H 1.08998 * 109.60747 * 307.60906 * 22 21 19 47 47 H 1.09006 * 109.39506 * 189.17694 * 23 22 21 48 48 H 1.08994 * 109.10382 * 69.85927 * 23 22 21 49 49 H 0.97002 * 117.95022 * 198.89760 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6352 2.1265 1.3073 5 6 2.0243 3.6053 1.2509 6 6 3.5649 1.4444 -0.1257 7 7 3.9491 0.8699 -1.4175 8 6 4.3130 -0.5461 -1.5102 9 6 5.8117 -0.6855 -1.4356 10 1 6.4311 0.1928 -1.3292 11 6 6.3921 -1.9344 -1.5019 12 7 5.6379 -3.0040 -1.6309 13 14 8.2499 -2.1070 -1.4101 14 1 8.8655 -0.7632 -1.2676 15 1 8.6119 -2.9437 -0.2378 16 1 8.7491 -2.7515 -2.6514 17 6 3.9676 1.6441 -2.5206 18 8 3.7530 2.8344 -2.4297 19 6 4.2550 1.0308 -3.8668 20 1 5.1425 0.4020 -3.7961 21 6 4.5016 2.1425 -4.8897 22 6 4.5172 1.5178 -6.2900 23 6 3.1138 1.0133 -6.6201 24 7 2.5984 0.1862 -5.5363 25 6 3.0835 0.1940 -4.2940 26 8 2.5497 -0.5121 -3.4650 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6054 1.9815 -0.8419 33 1 0.5574 2.0394 1.4444 34 1 2.1475 1.6476 2.1417 35 1 1.4593 4.0997 0.4607 36 1 1.7998 4.0767 2.2077 37 1 3.0909 3.6926 1.0441 38 1 3.9965 0.8496 0.6792 39 1 3.9336 2.4679 -0.0592 40 1 3.8557 -1.0935 -0.6860 41 1 3.9572 -0.9514 -2.4574 42 1 6.0463 -3.8825 -1.6780 43 1 3.7039 2.8826 -4.8269 44 1 5.4611 2.6192 -4.6894 45 1 4.8188 2.2675 -7.0216 46 1 5.2186 0.6837 -6.3107 47 1 3.1470 0.4253 -7.5374 48 1 2.4530 1.8675 -6.7670 49 1 1.8589 -0.4103 -5.7317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601040320.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:06 Heat of formation + Delta-G solvation = -112.673343 kcal Electronic energy + Delta-G solvation = -28428.686904 eV Core-core repulsion = 24775.058573 eV Total energy + Delta-G solvation = -3653.628330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.00291 -40.13588 -38.34570 -37.43755 -36.11096 -34.36144 -33.95240 -32.65629 -30.98957 -29.84625 -28.44250 -26.23178 -25.14784 -24.54448 -23.69685 -23.42037 -21.21074 -20.53882 -19.51474 -18.67995 -18.38851 -17.94611 -17.27875 -17.20889 -16.40993 -16.00098 -15.79450 -15.41314 -15.30674 -15.14489 -14.91118 -14.74008 -14.43573 -14.31794 -14.10228 -14.04681 -13.68723 -13.33077 -12.97225 -12.88333 -12.79501 -12.69322 -12.66158 -12.38711 -12.26760 -12.16914 -12.12577 -12.00144 -11.81110 -11.68188 -11.46668 -11.32714 -11.21597 -10.85729 -10.59701 -10.39922 -9.94720 -9.26746 -8.15218 -6.31735 1.37679 1.39829 1.45646 1.51729 1.72731 2.32033 2.44353 2.53274 3.11557 3.57884 3.66499 3.76619 3.86393 3.92175 3.95335 4.04408 4.21160 4.35719 4.42972 4.43958 4.49210 4.57987 4.58622 4.71900 4.76986 4.80303 4.88210 4.91309 4.92091 5.04018 5.05572 5.07188 5.07643 5.12737 5.23435 5.27562 5.36040 5.43795 5.45764 5.50874 5.55207 5.78196 5.93493 5.97485 6.14718 6.30229 6.59964 6.88274 7.27154 7.29428 7.42425 8.89038 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.008542 B = 0.007122 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.274033 B = 3930.554147 C = 5671.613523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.110 4.110 5 C -0.148 4.148 6 C 0.118 3.882 7 N -0.578 5.578 8 C 0.239 3.761 9 C -0.552 4.552 10 H 0.049 0.951 11 C 0.018 3.982 12 N -0.919 5.919 13 Si 0.957 3.043 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.273 1.273 17 C 0.526 3.474 18 O -0.589 6.589 19 C -0.125 4.125 20 H 0.119 0.881 21 C -0.099 4.099 22 C -0.132 4.132 23 C 0.104 3.896 24 N -0.709 5.709 25 C 0.523 3.477 26 O -0.564 6.564 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.006 0.994 41 H 0.067 0.933 42 H 0.265 0.735 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.122 0.878 46 H 0.069 0.931 47 H 0.110 0.890 48 H 0.083 0.917 49 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.407 8.923 -7.110 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C -0.104 4.104 4 C -0.148 4.148 5 C -0.206 4.206 6 C -0.005 4.005 7 N -0.305 5.305 8 C 0.118 3.882 9 C -0.591 4.591 10 H 0.068 0.932 11 C -0.182 4.182 12 N -0.558 5.558 13 Si 0.782 3.218 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.199 1.199 17 C 0.313 3.687 18 O -0.472 6.472 19 C -0.149 4.149 20 H 0.136 0.864 21 C -0.137 4.137 22 C -0.170 4.170 23 C -0.018 4.018 24 N -0.361 5.361 25 C 0.309 3.691 26 O -0.444 6.444 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.024 0.976 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.140 0.860 46 H 0.088 0.912 47 H 0.128 0.872 48 H 0.101 0.899 49 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.597 9.105 -6.590 13.032 hybrid contribution 0.925 -0.942 0.238 1.341 sum -5.671 8.163 -6.353 11.797 Atomic orbital electron populations 1.21695 0.94483 1.01509 1.01733 1.21577 0.96983 0.96148 1.01270 1.21397 0.94303 0.96108 0.98627 1.21541 1.02026 0.95639 0.95610 1.21782 1.01009 0.95829 1.01946 1.21566 0.95359 0.98540 0.85001 1.48036 1.63100 1.12177 1.07231 1.19619 0.93305 0.75640 0.99604 1.21879 0.93164 0.92726 1.51290 0.93248 1.25705 1.02646 0.95226 0.94577 1.70092 1.36925 0.98654 1.50126 0.85526 0.80032 0.78212 0.78023 1.19342 1.20515 1.19886 1.20103 0.76368 0.85889 0.86335 1.90544 1.53552 1.15825 1.87270 1.21377 0.99155 0.99743 0.94586 0.86383 1.21518 1.03568 0.95431 0.93213 1.21917 0.96824 1.02205 0.96019 1.21694 0.95381 0.95586 0.89166 1.45377 1.37207 1.44448 1.09107 1.19655 0.84582 0.81871 0.83027 1.90729 1.59552 1.43317 1.50775 0.90776 0.93895 0.92843 0.93659 0.92724 0.93534 0.90155 0.91367 0.93463 0.90858 0.93729 0.91410 0.91186 0.97605 0.91513 0.92549 0.90810 0.90412 0.85958 0.91197 0.87206 0.89901 0.75768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.68 71.98 0.70 -3.46 16 2 C -0.12 -4.58 4.75 30.60 0.15 -4.43 16 3 C -0.08 -3.06 2.02 -10.79 -0.02 -3.08 16 4 C -0.11 -3.06 5.27 30.60 0.16 -2.90 16 5 C -0.15 -3.88 9.77 71.99 0.70 -3.18 16 6 C 0.12 4.91 4.66 86.38 0.40 5.31 16 7 N -0.58 -27.19 2.02 -826.16 -1.67 -28.87 16 8 C 0.24 12.73 3.11 85.63 0.27 12.99 16 9 C -0.55 -30.72 8.63 25.60 0.22 -30.50 16 10 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 11 C 0.02 1.02 5.46 84.66 0.46 1.48 16 12 N -0.92 -53.82 13.29 21.45 0.28 -53.53 16 13 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 C 0.53 23.72 6.60 87.66 0.58 24.30 16 18 O -0.59 -27.34 15.40 -3.05 -0.05 -27.39 16 19 C -0.12 -4.84 2.00 -12.43 -0.02 -4.86 16 20 H 0.12 5.10 6.98 -2.39 -0.02 5.09 16 21 C -0.10 -2.83 4.91 30.73 0.15 -2.68 16 22 C -0.13 -2.50 6.01 30.62 0.18 -2.32 16 23 C 0.10 1.77 7.16 86.43 0.62 2.39 16 24 N -0.71 -18.87 5.45 -467.62 -2.55 -21.41 16 25 C 0.52 19.93 7.04 87.71 0.62 20.55 16 26 O -0.56 -26.43 13.49 -3.03 -0.04 -26.47 16 27 H 0.07 1.85 6.45 -2.39 -0.02 1.83 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 2.08 5.79 -2.39 -0.01 2.07 16 31 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.08 1.95 6.32 -2.39 -0.02 1.93 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.04 1.29 6.33 -2.39 -0.02 1.27 16 38 H 0.07 2.85 8.03 -2.39 -0.02 2.83 16 39 H 0.07 2.88 5.74 -2.39 -0.01 2.86 16 40 H 0.01 0.34 6.88 -2.39 -0.02 0.32 16 41 H 0.07 3.80 4.00 -4.66 -0.02 3.79 16 42 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.07 2.19 7.56 -2.39 -0.02 2.17 16 44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 47 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.41 9.64 8.80 -92.71 -0.82 8.83 16 Total: -1.00 -72.05 374.24 3.28 -68.77 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.12 Total: 34.01 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 5.16 Total: 9.60 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.94 Total: -103.81 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.09 Total: -53.85 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -72.05 3.28 -68.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601040320.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.908 kcal (2) G-P(sol) polarization free energy of solvation -72.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds