Wall clock time and date at job start Fri Apr 10 2020 22:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47319 * 2 1 4 4 C 1.52998 * 109.47323 * 64.99535 * 3 2 1 5 5 C 1.52999 * 109.47056 * 185.45530 * 4 3 2 6 6 C 1.52995 * 109.46908 * 185.00202 * 3 2 1 7 7 N 1.46492 * 109.47594 * 64.83531 * 6 3 2 8 8 C 1.46503 * 120.00022 * 84.11475 * 7 6 3 9 9 C 1.50702 * 109.47103 * 97.35752 * 8 7 6 10 10 H 1.08002 * 119.99820 * 114.21325 * 9 8 7 11 11 C 1.37873 * 120.00328 * 294.20798 * 9 8 7 12 12 N 1.31518 * 119.99606 * 1.76130 * 11 9 8 13 13 Si 1.86800 * 120.00279 * 181.75642 * 11 9 8 14 14 H 1.48499 * 109.46818 * 90.00219 * 13 11 9 15 15 H 1.48502 * 109.47312 * 210.00125 * 13 11 9 16 16 H 1.48502 * 109.47247 * 330.00673 * 13 11 9 17 17 C 1.34777 * 120.00611 * 264.11762 * 7 6 3 18 18 O 1.21286 * 119.99249 * 5.02733 * 17 7 6 19 19 C 1.50701 * 120.00386 * 185.03439 * 17 7 6 20 20 H 1.08994 * 109.39967 * 40.85802 * 19 17 7 21 21 C 1.53071 * 109.40092 * 160.60230 * 19 17 7 22 22 C 1.53363 * 108.41236 * 169.03390 * 21 19 17 23 23 C 1.52918 * 108.66357 * 292.44379 * 22 21 19 24 24 N 1.45764 * 110.48693 * 50.76425 * 23 22 21 25 25 C 1.33349 * 124.10472 * 340.94407 * 24 23 22 26 26 O 1.21275 * 118.24621 * 182.19844 * 25 24 23 27 27 H 1.09007 * 109.46751 * 300.00516 * 1 2 3 28 28 H 1.09002 * 109.46479 * 59.99873 * 1 2 3 29 29 H 1.08990 * 109.47286 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47247 * 239.99463 * 2 1 3 31 31 H 1.09000 * 109.47101 * 119.99709 * 2 1 3 32 32 H 1.09003 * 109.46942 * 304.99731 * 3 2 1 33 33 H 1.08997 * 109.47147 * 305.46324 * 4 3 2 34 34 H 1.09000 * 109.46686 * 65.45871 * 4 3 2 35 35 H 1.08996 * 109.47368 * 304.23505 * 5 4 3 36 36 H 1.09003 * 109.46935 * 64.23527 * 5 4 3 37 37 H 1.08997 * 109.47250 * 184.23092 * 5 4 3 38 38 H 1.09004 * 109.47279 * 304.83425 * 6 3 2 39 39 H 1.09005 * 109.47219 * 184.84122 * 6 3 2 40 40 H 1.09000 * 109.47065 * 337.35820 * 8 7 6 41 41 H 1.08997 * 109.47258 * 217.36051 * 8 7 6 42 42 H 0.97010 * 119.99782 * 175.00675 * 12 11 9 43 43 H 1.08999 * 109.67234 * 288.76348 * 21 19 17 44 44 H 1.09004 * 109.66869 * 49.29227 * 21 19 17 45 45 H 1.08994 * 109.60028 * 172.70008 * 22 21 19 46 46 H 1.08999 * 109.75026 * 52.28362 * 22 21 19 47 47 H 1.09001 * 109.30503 * 290.45068 * 23 22 21 48 48 H 1.09003 * 109.30085 * 171.07199 * 23 22 21 49 49 H 0.96998 * 117.94669 * 160.92170 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1266 1.3073 5 6 2.0253 3.6050 1.2512 6 6 3.5649 1.4442 -0.1258 7 7 3.9482 0.8941 -1.4282 8 6 3.9717 1.7590 -2.6105 9 6 5.3802 2.2349 -2.8568 10 1 5.9079 1.9228 -3.7459 11 6 5.9950 3.0689 -1.9473 12 7 5.3651 3.4212 -0.8478 13 14 7.7227 3.6984 -2.2765 14 1 7.6487 4.9787 -3.0252 15 1 8.4233 3.9194 -0.9859 16 1 8.4695 2.6975 -3.0801 17 6 4.2791 -0.4077 -1.5391 18 8 4.1723 -1.1441 -0.5813 19 6 4.7821 -0.9482 -2.8528 20 1 5.4633 -0.2269 -3.3041 21 6 5.5254 -2.2641 -2.6102 22 6 5.7852 -2.9310 -3.9665 23 6 4.4458 -3.3667 -4.5621 24 7 3.4968 -2.2605 -4.5472 25 6 3.6193 -1.1806 -3.7744 26 8 2.7448 -0.3415 -3.8180 27 1 -0.3633 0.5140 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6055 1.9815 -0.8419 33 1 0.5574 2.0400 1.4440 34 1 2.1471 1.6473 2.1418 35 1 3.0910 3.6919 1.0396 36 1 1.4569 4.1011 0.4644 37 1 1.8057 4.0753 2.2097 38 1 3.9956 0.8333 0.6676 39 1 3.9355 2.4657 -0.0395 40 1 3.3215 2.6181 -2.4452 41 1 3.6205 1.1991 -3.4773 42 1 5.8230 3.9482 -0.1742 43 1 6.4740 -2.0633 -2.1122 44 1 4.9161 -2.9205 -1.9889 45 1 6.4250 -3.8026 -3.8289 46 1 6.2710 -2.2231 -4.6380 47 1 4.0437 -4.1943 -3.9776 48 1 4.5987 -3.6964 -5.5898 49 1 2.7282 -2.3130 -5.1365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601040321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:08 Heat of formation + Delta-G solvation = -90.304023 kcal Electronic energy + Delta-G solvation = -28746.709480 eV Core-core repulsion = 25094.051156 eV Total energy + Delta-G solvation = -3652.658324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42648 -38.36668 -36.47930 -36.09002 -34.32209 -32.62186 -31.98795 -31.12633 -29.67546 -28.10974 -26.52141 -24.84506 -23.06033 -22.79474 -22.45642 -21.96817 -19.65385 -18.85521 -17.96882 -17.13966 -16.65005 -16.19721 -15.45117 -15.28414 -14.77374 -14.57667 -14.19560 -13.88928 -13.84266 -13.62823 -13.45003 -13.33113 -13.04396 -12.56607 -12.37913 -12.09073 -11.96786 -11.65907 -11.59957 -11.32047 -11.23192 -11.09627 -11.00057 -10.91980 -10.79301 -10.62686 -10.55438 -10.47084 -9.99419 -9.77640 -9.65456 -9.55124 -9.40293 -9.01367 -8.75233 -8.74738 -8.49734 -6.91730 -6.11483 -4.28430 2.97031 3.20917 3.29247 3.30392 3.36766 3.88217 4.29877 4.41765 4.82083 4.91598 4.98249 5.10572 5.17928 5.44842 5.50029 5.58912 5.60418 5.69929 5.77333 5.82463 5.85354 5.97578 6.00865 6.02710 6.08860 6.30802 6.34165 6.36699 6.45815 6.50476 6.53702 6.59274 6.72235 6.82979 6.85060 6.93939 6.98774 7.06617 7.14621 7.30797 7.45487 7.53382 7.63362 7.96494 8.12117 8.18865 8.56188 8.67160 9.08286 9.45737 9.47779 10.85921 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.007610 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.521319 B = 3678.680778 C = 5806.935821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.099 4.099 4 C -0.111 4.111 5 C -0.154 4.154 6 C 0.095 3.905 7 N -0.544 5.544 8 C 0.204 3.796 9 C -0.538 4.538 10 H 0.057 0.943 11 C 0.077 3.923 12 N -0.874 5.874 13 Si 0.895 3.105 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.524 3.476 18 O -0.584 6.584 19 C -0.125 4.125 20 H 0.138 0.862 21 C -0.106 4.106 22 C -0.137 4.137 23 C 0.113 3.887 24 N -0.725 5.725 25 C 0.532 3.468 26 O -0.529 6.529 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.039 0.961 38 H 0.048 0.952 39 H 0.150 0.850 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.264 0.736 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 -9.169 -3.367 10.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.119 4.119 4 C -0.149 4.149 5 C -0.211 4.211 6 C -0.028 4.028 7 N -0.270 5.270 8 C 0.084 3.916 9 C -0.577 4.577 10 H 0.075 0.925 11 C -0.127 4.127 12 N -0.512 5.512 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.200 1.200 17 C 0.309 3.691 18 O -0.468 6.468 19 C -0.149 4.149 20 H 0.155 0.845 21 C -0.144 4.144 22 C -0.175 4.175 23 C -0.012 4.012 24 N -0.378 5.378 25 C 0.319 3.681 26 O -0.405 6.405 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.166 0.834 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.724 -8.844 -2.629 9.620 hybrid contribution 0.818 0.263 -0.418 0.955 sum -1.906 -8.581 -3.047 9.303 Atomic orbital electron populations 1.21835 0.97591 1.00225 1.00964 1.21494 0.93777 0.97247 1.02166 1.21596 0.98384 0.95011 0.96871 1.21491 0.99811 0.95866 0.97755 1.21841 1.03560 0.95761 0.99963 1.22432 0.91336 1.04707 0.84292 1.48351 1.60690 1.07325 1.10607 1.19887 0.96044 0.90817 0.84802 1.21613 1.00793 1.28246 1.07043 0.92506 1.25012 0.97888 0.94695 0.95080 1.69372 1.36158 1.37395 1.08275 0.86564 0.84137 0.79293 0.77739 1.20514 1.21154 1.19969 1.19461 0.78476 0.83253 0.87860 1.90557 1.57854 1.58265 1.40104 1.21482 0.97013 1.00275 0.96153 0.84481 1.21503 1.01288 0.95134 0.96480 1.21908 0.96245 1.01706 0.97666 1.21342 0.89854 0.88890 1.01098 1.45440 1.27983 1.20428 1.43933 1.19820 0.87564 0.80772 0.79948 1.90689 1.40847 1.41876 1.67123 0.93245 0.93334 0.93979 0.91847 0.92802 0.91867 0.92909 0.92778 0.90613 0.93336 0.94164 0.93361 0.83355 0.94508 0.91411 0.92529 0.90519 0.90156 0.89887 0.90847 0.91953 0.90973 0.76912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.68 37.16 0.36 -2.12 16 2 C -0.11 -2.17 4.50 -26.73 -0.12 -2.29 16 3 C -0.10 -2.00 2.05 -90.62 -0.19 -2.19 16 4 C -0.11 -1.93 5.27 -26.73 -0.14 -2.07 16 5 C -0.15 -2.63 9.77 37.16 0.36 -2.26 16 6 C 0.10 2.20 4.38 -4.05 -0.02 2.18 16 7 N -0.54 -12.97 2.13 -175.06 -0.37 -13.34 16 8 C 0.20 5.05 4.86 -5.19 -0.03 5.02 16 9 C -0.54 -13.77 8.10 -34.44 -0.28 -14.05 16 10 H 0.06 1.42 7.61 -52.49 -0.40 1.02 16 11 C 0.08 1.96 5.42 -17.82 -0.10 1.87 16 12 N -0.87 -22.53 9.68 55.43 0.54 -22.00 16 13 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 C 0.52 12.05 5.23 -10.98 -0.06 11.99 16 18 O -0.58 -14.26 13.94 5.55 0.08 -14.18 16 19 C -0.13 -2.40 2.03 -93.14 -0.19 -2.59 16 20 H 0.14 2.78 6.26 -51.93 -0.33 2.45 16 21 C -0.11 -1.63 5.00 -26.51 -0.13 -1.76 16 22 C -0.14 -1.50 6.02 -26.59 -0.16 -1.66 16 23 C 0.11 1.12 7.17 -4.48 -0.03 1.09 16 24 N -0.72 -9.73 5.45 -61.38 -0.33 -10.06 16 25 C 0.53 9.70 7.11 -11.87 -0.08 9.62 16 26 O -0.53 -11.40 13.97 5.56 0.08 -11.33 16 27 H 0.05 0.74 6.45 -51.92 -0.34 0.41 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.44 6.01 -51.93 -0.31 1.13 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.05 0.83 6.33 -51.93 -0.33 0.50 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.46 6.30 -51.93 -0.33 1.13 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 1.18 7.32 -51.93 -0.38 0.80 16 39 H 0.15 3.61 2.92 -51.93 -0.15 3.46 16 40 H 0.04 0.98 8.02 -51.93 -0.42 0.56 16 41 H 0.07 1.66 4.08 -51.95 -0.21 1.45 16 42 H 0.26 6.57 8.32 -40.82 -0.34 6.23 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.08 1.31 7.48 -51.93 -0.39 0.92 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.40 4.66 8.80 -40.82 -0.36 4.30 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -29.40 366.20 -8.46 -37.86 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -8.14 Total: 11.69 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.80 Total: 0.77 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.17 Total: -45.40 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.16 Total: -25.51 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.40 -8.46 -37.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601040321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.447 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds