Wall clock time and date at job start Fri Apr 10 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.47189 * 119.78513 * 2 1 4 4 C 1.52987 * 108.66657 * 251.96433 * 3 2 1 5 5 C 1.51777 * 110.88141 * 273.54396 * 4 3 2 6 6 C 1.51820 * 113.79868 * 67.00442 * 5 4 3 7 7 C 1.53062 * 110.72954 * 293.15793 * 6 5 4 8 8 H 1.08992 * 109.63252 * 325.24147 * 7 6 5 9 9 C 1.50698 * 109.62819 * 204.64480 * 7 6 5 10 10 O 1.21282 * 120.00529 * 1.00591 * 9 7 6 11 11 N 1.34777 * 120.00123 * 181.00033 * 9 7 6 12 12 C 1.46493 * 120.00475 * 180.02562 * 11 9 7 13 13 C 1.53008 * 109.47430 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46869 * 300.00221 * 13 12 11 15 15 C 1.53002 * 109.46805 * 59.99713 * 13 12 11 16 16 C 1.52996 * 109.47241 * 180.02562 * 13 12 11 17 17 C 1.50698 * 109.47105 * 180.02562 * 16 13 12 18 18 H 1.07998 * 120.00221 * 359.97438 * 17 16 13 19 19 C 1.37879 * 120.00184 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00122 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99868 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47379 * 90.00391 * 21 19 17 23 23 H 1.48497 * 109.47469 * 210.00659 * 21 19 17 24 24 H 1.48504 * 109.47307 * 330.00490 * 21 19 17 25 25 C 1.33370 * 119.77965 * 179.97438 * 2 1 3 26 26 O 1.21281 * 119.89815 * 359.70255 * 25 2 1 27 27 H 1.09002 * 109.46796 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47221 * 300.02631 * 1 2 3 29 29 H 1.08998 * 109.46612 * 60.02445 * 1 2 3 30 30 H 1.09002 * 109.60569 * 11.71834 * 3 2 1 31 31 H 1.09002 * 109.60371 * 132.04577 * 3 2 1 32 32 H 1.09000 * 109.19444 * 33.89837 * 4 3 2 33 33 H 1.08995 * 109.19663 * 153.17591 * 4 3 2 34 34 H 1.08993 * 108.61919 * 188.11668 * 5 4 3 35 35 H 1.09004 * 108.60768 * 306.01459 * 5 4 3 36 36 H 1.08997 * 109.20759 * 172.84523 * 6 5 4 37 37 H 1.08996 * 109.24579 * 53.49406 * 6 5 4 38 38 H 0.97006 * 119.99930 * 0.02562 * 11 9 7 39 39 H 1.08992 * 109.47400 * 300.00156 * 12 11 9 40 40 H 1.08999 * 109.47083 * 60.00156 * 12 11 9 41 41 H 1.09000 * 109.47007 * 59.99721 * 14 13 12 42 42 H 1.08997 * 109.46855 * 179.97438 * 14 13 12 43 43 H 1.08999 * 109.47152 * 299.99620 * 14 13 12 44 44 H 1.09005 * 109.46607 * 60.00452 * 15 13 12 45 45 H 1.09003 * 109.46459 * 180.02562 * 15 13 12 46 46 H 1.08992 * 109.47107 * 300.00075 * 15 13 12 47 47 H 1.09000 * 109.46787 * 299.99807 * 16 13 12 48 48 H 1.08999 * 109.47293 * 60.00065 * 16 13 12 49 49 H 0.96999 * 120.00140 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1962 1.2774 0.0000 4 6 2.8289 1.4795 -1.3782 5 6 4.1870 0.8060 -1.4540 6 6 4.1241 -0.7093 -1.3846 7 6 3.6417 -1.1690 -0.0066 8 1 4.0168 -0.4891 0.7582 9 6 4.1388 -2.5656 0.2638 10 8 4.8291 -3.1331 -0.5562 11 7 3.8165 -3.1842 1.4170 12 6 4.3002 -4.5417 1.6802 13 6 3.7946 -5.0073 3.0473 14 6 4.3138 -4.0615 4.1321 15 6 2.2646 -5.0006 3.0544 16 6 4.3003 -6.4248 3.3224 17 6 3.8019 -6.8835 4.6685 18 1 3.1863 -6.2294 5.2681 19 6 4.1325 -8.1381 5.1352 20 7 3.6979 -8.5382 6.3102 21 14 5.1978 -9.2694 4.0986 22 1 6.6278 -9.0421 4.4280 23 1 4.8427 -10.6828 4.3840 24 1 4.9698 -8.9828 2.6594 25 6 2.1275 -1.1576 0.0005 26 8 1.5152 -2.2045 0.0064 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5142 0.8897 29 1 -0.3632 0.5135 -0.8902 30 1 1.5053 2.0943 0.2085 31 1 2.9748 1.2532 0.7625 32 1 2.1747 1.0534 -2.1388 33 1 2.9471 2.5467 -1.5653 34 1 4.6654 1.0918 -2.3907 35 1 4.8001 1.1654 -0.6275 36 1 5.1168 -1.1184 -1.5722 37 1 3.4359 -1.0756 -2.1464 38 1 3.2641 -2.7305 2.0728 39 1 3.9300 -5.2155 0.9077 40 1 5.3901 -4.5465 1.6747 41 1 3.9539 -3.0515 3.9362 42 1 3.9533 -4.3929 5.1059 43 1 5.4038 -4.0662 4.1270 44 1 1.8948 -5.6744 2.2815 45 1 1.9045 -5.3319 4.0285 46 1 1.9048 -3.9906 2.8587 47 1 3.9308 -7.0987 2.5495 48 1 5.3903 -6.4291 3.3174 49 1 3.9303 -9.4210 6.6383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602155607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:11 Heat of formation + Delta-G solvation = -90.283502 kcal Electronic energy + Delta-G solvation = -27181.229834 eV Core-core repulsion = 23528.572400 eV Total energy + Delta-G solvation = -3652.657434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12396 -39.18085 -37.27799 -36.97989 -34.82646 -33.57101 -32.10177 -31.54254 -28.88666 -27.78865 -26.78245 -26.47141 -25.56854 -24.20520 -22.45372 -21.05508 -20.64916 -19.25392 -18.14112 -17.83873 -17.24271 -16.77671 -16.15635 -15.78710 -15.34304 -15.03006 -14.59468 -14.36106 -14.12560 -14.02287 -13.75481 -13.49427 -13.38628 -13.23824 -12.97575 -12.64362 -12.54714 -12.36949 -12.23523 -12.16589 -11.91235 -11.42377 -11.19541 -11.17777 -11.07172 -11.02676 -10.94413 -10.55775 -10.41523 -9.98066 -9.90641 -9.87518 -9.69393 -9.38121 -9.06399 -8.93921 -8.69397 -8.49340 -6.00188 -3.96970 2.34557 2.42253 2.94326 3.34909 3.37073 3.42891 3.48076 4.10967 4.25327 4.30839 4.47804 4.49826 4.63976 4.84361 4.92440 4.95532 5.04592 5.10885 5.17122 5.27013 5.32877 5.45919 5.48609 5.54047 5.59306 5.61602 5.65232 5.72201 5.85773 5.96542 6.07553 6.16578 6.24365 6.26450 6.41691 6.56455 6.67906 6.78407 6.97154 6.98062 7.07916 7.12337 7.26384 7.43308 7.72006 7.84630 7.87750 8.39087 8.57829 9.04242 9.62787 11.12660 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025389 B = 0.003104 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.596233 B = 9018.590044 C = 9565.247693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.108 3.892 4 C -0.142 4.142 5 C -0.122 4.122 6 C -0.099 4.099 7 C -0.129 4.129 8 H 0.117 0.883 9 C 0.532 3.468 10 O -0.541 6.541 11 N -0.707 5.707 12 C 0.127 3.873 13 C -0.063 4.063 14 C -0.128 4.128 15 C -0.126 4.126 16 C -0.002 4.002 17 C -0.509 4.509 18 H 0.078 0.922 19 C 0.066 3.934 20 N -0.905 5.905 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 C 0.522 3.478 26 O -0.524 6.524 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.398 0.602 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.018 0.982 48 H 0.013 0.987 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 25.399 -13.824 29.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.015 4.015 4 C -0.180 4.180 5 C -0.160 4.160 6 C -0.137 4.137 7 C -0.154 4.154 8 H 0.135 0.865 9 C 0.316 3.684 10 O -0.419 6.419 11 N -0.356 5.356 12 C 0.004 3.996 13 C -0.063 4.063 14 C -0.185 4.185 15 C -0.184 4.184 16 C -0.040 4.040 17 C -0.547 4.547 18 H 0.096 0.904 19 C -0.135 4.135 20 N -0.544 5.544 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.189 1.189 25 C 0.308 3.692 26 O -0.399 6.399 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.233 0.767 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.037 0.963 48 H 0.032 0.968 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.701 24.251 -14.273 28.269 hybrid contribution 0.259 -0.357 -0.101 0.452 sum -2.443 23.894 -14.373 27.991 Atomic orbital electron populations 1.21747 0.78931 1.04663 1.01238 1.47671 1.07197 1.06143 1.73567 1.21881 0.96673 0.85230 0.97728 1.21830 0.97343 1.01412 0.97429 1.21206 0.97028 0.94659 1.03094 1.21152 1.04005 0.95234 0.93299 1.21765 0.93588 0.97763 1.02242 0.86485 1.19656 0.80204 0.86636 0.81925 1.90679 1.39117 1.66327 1.45769 1.45993 1.52690 1.17581 1.19372 1.21637 0.98623 0.81298 0.98013 1.20689 0.95998 0.98132 0.91513 1.21771 1.00313 0.96167 1.00254 1.21740 0.94598 0.99118 1.02901 1.19588 0.95840 0.90557 0.97971 1.21090 1.32052 1.00574 1.00981 0.90407 1.24994 0.95777 0.97915 0.94773 1.69901 1.46176 1.19787 1.18574 0.86856 0.81078 0.80127 0.81713 1.20398 1.21533 1.18948 1.20027 0.89218 0.83690 0.76275 1.90812 1.69287 1.31059 1.48792 0.89174 0.91987 0.92246 0.89350 0.90340 0.91102 0.90362 0.91061 0.91547 0.88713 0.91264 0.76671 0.91768 0.91821 0.95205 0.90886 0.93406 0.93388 0.91095 0.94907 0.96338 0.96836 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.59 59.85 0.63 1.20 16 2 N -0.61 -5.14 2.86 -181.11 -0.52 -5.66 16 3 C 0.11 0.53 5.91 -3.67 -0.02 0.51 16 4 C -0.14 -0.67 5.74 -27.36 -0.16 -0.83 16 5 C -0.12 -0.71 5.28 -27.95 -0.15 -0.86 16 6 C -0.10 -0.94 4.80 -27.30 -0.13 -1.08 16 7 C -0.13 -1.42 2.24 -92.54 -0.21 -1.62 16 8 H 0.12 0.94 6.77 -51.93 -0.35 0.59 16 9 C 0.53 8.27 6.57 -10.99 -0.07 8.20 16 10 O -0.54 -10.21 15.49 5.56 0.09 -10.12 16 11 N -0.71 -11.11 4.54 -60.30 -0.27 -11.38 16 12 C 0.13 2.32 4.56 -4.04 -0.02 2.30 16 13 C -0.06 -1.23 0.54 -154.50 -0.08 -1.31 16 14 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 15 C -0.13 -2.43 8.05 37.16 0.30 -2.13 16 16 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 17 C -0.51 -13.98 8.20 -34.44 -0.28 -14.27 16 18 H 0.08 2.26 5.92 -52.49 -0.31 1.95 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.91 -27.72 13.96 55.43 0.77 -26.95 16 21 Si 0.87 21.99 27.47 -169.99 -4.67 17.32 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 25 C 0.52 6.23 6.50 -11.25 -0.07 6.16 16 26 O -0.52 -8.52 15.09 5.56 0.08 -8.44 16 27 H 0.09 0.88 6.85 -51.93 -0.36 0.53 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.26 7.96 -51.93 -0.41 -0.15 16 31 H 0.08 0.33 6.72 -51.93 -0.35 -0.02 16 32 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 36 H 0.09 1.03 7.11 -51.93 -0.37 0.66 16 37 H 0.07 0.75 7.86 -51.93 -0.41 0.35 16 38 H 0.40 5.69 6.06 -40.82 -0.25 5.44 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 42 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 46 H 0.03 0.55 6.86 -51.93 -0.36 0.20 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 48 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -34.56 372.12 -7.40 -41.96 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.35 Total: 1.70 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.15 Total: -4.05 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.02 Total: -43.99 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.56 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.56 -7.40 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602155607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.322 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds