Wall clock time and date at job start Fri Apr 10 2020 22:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47192 * 119.78778 * 2 1 4 4 C 1.52987 * 108.66450 * 108.02199 * 3 2 1 5 5 C 1.51777 * 110.84670 * 86.49121 * 4 3 2 6 6 C 1.51783 * 113.78628 * 292.89959 * 5 4 3 7 7 C 1.53055 * 110.70337 * 66.91738 * 6 5 4 8 8 H 1.09000 * 109.63365 * 34.73936 * 7 6 5 9 9 C 1.50699 * 109.80164 * 155.24247 * 7 6 5 10 10 O 1.21283 * 119.99541 * 359.10603 * 9 7 6 11 11 N 1.34774 * 120.00230 * 179.09847 * 9 7 6 12 12 C 1.46498 * 119.99983 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47070 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47331 * 300.00145 * 13 12 11 15 15 C 1.53004 * 109.47192 * 60.00247 * 13 12 11 16 16 C 1.52995 * 109.47308 * 180.02562 * 13 12 11 17 17 C 1.50704 * 109.47474 * 179.97438 * 16 13 12 18 18 H 1.08000 * 119.99982 * 0.02562 * 17 16 13 19 19 C 1.37873 * 120.00045 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00056 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47352 * 89.99420 * 21 19 17 23 23 H 1.48500 * 109.47098 * 209.99745 * 21 19 17 24 24 H 1.48507 * 109.46705 * 329.99564 * 21 19 17 25 25 C 1.33371 * 119.78698 * 179.97438 * 2 1 3 26 26 O 1.21285 * 119.89141 * 0.29942 * 25 2 1 27 27 H 1.08999 * 109.47426 * 90.00265 * 1 2 3 28 28 H 1.09005 * 109.47148 * 209.99784 * 1 2 3 29 29 H 1.09001 * 109.47081 * 330.00340 * 1 2 3 30 30 H 1.08997 * 109.60522 * 348.26401 * 3 2 1 31 31 H 1.09001 * 109.74188 * 227.85152 * 3 2 1 32 32 H 1.09002 * 109.19620 * 206.83084 * 4 3 2 33 33 H 1.08998 * 109.19235 * 326.15550 * 4 3 2 34 34 H 1.09002 * 108.61591 * 54.09003 * 5 4 3 35 35 H 1.09000 * 108.61957 * 171.85107 * 5 4 3 36 36 H 1.09001 * 109.27816 * 306.57980 * 6 5 4 37 37 H 1.08995 * 109.17365 * 187.18839 * 6 5 4 38 38 H 0.97005 * 119.99729 * 0.02562 * 11 9 7 39 39 H 1.08997 * 109.47267 * 300.00416 * 12 11 9 40 40 H 1.09000 * 109.47135 * 60.00722 * 12 11 9 41 41 H 1.09000 * 109.47080 * 59.99694 * 14 13 12 42 42 H 1.08999 * 109.47711 * 179.97438 * 14 13 12 43 43 H 1.08995 * 109.47217 * 300.00304 * 14 13 12 44 44 H 1.08997 * 109.47175 * 59.99932 * 15 13 12 45 45 H 1.09004 * 109.46788 * 180.02562 * 15 13 12 46 46 H 1.09000 * 109.46775 * 300.00034 * 15 13 12 47 47 H 1.08996 * 109.47544 * 300.00063 * 16 13 12 48 48 H 1.09000 * 109.47143 * 60.00205 * 16 13 12 49 49 H 0.96994 * 120.00043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1962 1.2774 0.0000 4 6 2.8286 1.4796 1.3783 5 6 4.1869 0.8065 1.4533 6 6 4.1239 -0.7085 1.3856 7 6 3.6417 -1.1690 0.0079 8 1 4.0168 -0.4895 -0.7574 9 6 4.1389 -2.5649 -0.2667 10 8 4.8289 -3.1348 0.5519 11 7 3.8166 -3.1800 -1.4218 12 6 4.3004 -4.5367 -1.6889 13 6 3.7961 -4.9977 -3.0578 14 6 2.2661 -4.9909 -3.0665 15 6 4.3165 -4.0486 -4.1392 16 6 4.3008 -6.4149 -3.3366 17 6 3.8035 -6.8692 -4.6847 18 1 3.1892 -6.2126 -5.2831 19 6 4.1335 -8.1226 -5.1547 20 7 3.7000 -8.5190 -6.3314 21 14 5.1965 -9.2581 -4.1201 22 1 4.3294 -10.0868 -3.2448 23 1 5.9894 -10.1423 -5.0115 24 1 6.1160 -8.4475 -3.2816 25 6 2.1275 -1.1575 0.0005 26 8 1.5152 -2.2044 -0.0045 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.5054 2.0943 -0.2089 31 1 2.9766 1.2550 -0.7606 32 1 2.9467 2.5469 1.5654 33 1 2.1746 1.0527 2.1387 34 1 4.8003 1.1677 0.6279 35 1 4.6657 1.0925 2.3898 36 1 3.4357 -1.0745 2.1475 37 1 5.1169 -1.1168 1.5732 38 1 3.2649 -2.7240 -2.0765 39 1 5.3904 -4.5415 -1.6831 40 1 3.9300 -5.2129 -0.9184 41 1 1.9061 -3.9814 -2.8677 42 1 1.9067 -5.3188 -4.0419 43 1 1.8954 -5.6670 -2.2962 44 1 5.4064 -4.0535 -4.1331 45 1 3.9567 -4.3768 -5.1144 46 1 3.9565 -3.0391 -3.9404 47 1 5.3907 -6.4203 -3.3303 48 1 3.9296 -7.0908 -2.5662 49 1 3.9319 -9.4009 -6.6619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602155608.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:13 Heat of formation + Delta-G solvation = -90.431007 kcal Electronic energy + Delta-G solvation = -27179.909285 eV Core-core repulsion = 23527.245455 eV Total energy + Delta-G solvation = -3652.663830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11478 -39.17602 -37.27176 -36.97921 -34.83406 -33.56925 -32.10017 -31.54238 -28.88234 -27.78745 -26.78748 -26.47030 -25.57384 -24.20736 -22.45429 -21.05574 -20.65105 -19.25874 -18.13717 -17.81013 -17.23529 -16.77450 -16.15794 -15.78655 -15.34691 -15.03256 -14.61457 -14.35492 -14.12505 -14.02643 -13.76069 -13.47265 -13.36913 -13.17384 -12.99275 -12.68965 -12.62126 -12.33672 -12.22679 -12.15986 -11.90068 -11.43839 -11.19590 -11.17486 -11.06245 -11.02234 -10.95125 -10.55329 -10.42175 -9.98677 -9.90110 -9.87970 -9.68915 -9.37865 -9.06178 -8.93811 -8.69262 -8.49163 -6.00082 -3.96891 2.35494 2.42359 2.94467 3.35432 3.37185 3.42972 3.47586 4.11090 4.25277 4.30771 4.47792 4.49868 4.64270 4.84285 4.91624 4.93200 5.00003 5.11868 5.20750 5.27093 5.32981 5.45945 5.48604 5.51944 5.58312 5.61577 5.65123 5.72292 5.85728 5.96452 6.07984 6.16684 6.24637 6.26487 6.41750 6.56719 6.68008 6.78560 6.97446 6.98170 7.07711 7.12882 7.26568 7.43189 7.72160 7.84706 7.88397 8.39290 8.57926 9.04311 9.62884 11.12763 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025372 B = 0.003104 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.301692 B = 9017.942005 C = 9563.368199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.612 5.612 3 C 0.107 3.893 4 C -0.142 4.142 5 C -0.122 4.122 6 C -0.098 4.098 7 C -0.129 4.129 8 H 0.117 0.883 9 C 0.532 3.468 10 O -0.541 6.541 11 N -0.707 5.707 12 C 0.127 3.873 13 C -0.063 4.063 14 C -0.127 4.127 15 C -0.128 4.128 16 C -0.002 4.002 17 C -0.509 4.509 18 H 0.078 0.922 19 C 0.066 3.934 20 N -0.905 5.905 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 C 0.521 3.479 26 O -0.523 6.523 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.398 0.602 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.029 0.971 47 H 0.018 0.982 48 H 0.014 0.986 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 25.480 13.944 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.346 5.346 3 C -0.016 4.016 4 C -0.181 4.181 5 C -0.160 4.160 6 C -0.136 4.136 7 C -0.154 4.154 8 H 0.135 0.865 9 C 0.316 3.684 10 O -0.419 6.419 11 N -0.356 5.356 12 C 0.004 3.996 13 C -0.063 4.063 14 C -0.184 4.184 15 C -0.185 4.185 16 C -0.040 4.040 17 C -0.547 4.547 18 H 0.096 0.904 19 C -0.135 4.135 20 N -0.544 5.544 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 C 0.307 3.693 26 O -0.398 6.398 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.233 0.767 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.036 0.964 48 H 0.032 0.968 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.666 24.333 14.389 28.394 hybrid contribution 0.218 -0.391 0.106 0.460 sum -2.448 23.943 14.494 28.095 Atomic orbital electron populations 1.21704 0.78847 1.03239 1.02184 1.47696 1.07162 1.06144 1.73589 1.21908 0.96738 0.85186 0.97738 1.21846 0.97360 1.01407 0.97442 1.21198 0.97022 0.94661 1.03112 1.21138 1.03987 0.95215 0.93310 1.21765 0.93614 0.97767 1.02217 0.86525 1.19657 0.80200 0.86639 0.81927 1.90679 1.39130 1.66162 1.45931 1.45991 1.52724 1.17648 1.19279 1.21637 0.98634 0.81330 0.97963 1.20687 0.95978 0.98155 0.91514 1.21744 0.94616 0.99119 1.02900 1.21767 1.00312 0.96137 1.00264 1.19589 0.96214 0.90430 0.97727 1.21090 1.32050 1.00630 1.00916 0.90407 1.24996 0.95725 0.97930 0.94809 1.69903 1.46186 1.19870 1.18489 0.86855 0.81286 0.81089 0.80530 1.20371 1.21547 1.18973 1.20015 0.89182 0.83635 0.76476 1.90821 1.69369 1.31064 1.48569 0.92386 0.90314 0.91214 0.89341 0.90331 0.90363 0.91084 0.91541 0.91084 0.91248 0.88740 0.76673 0.91818 0.91768 0.94919 0.91095 0.93395 0.93399 0.90884 0.95201 0.96384 0.96786 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.35 59.84 0.62 1.22 16 2 N -0.61 -5.13 2.85 -181.11 -0.52 -5.65 16 3 C 0.11 0.52 5.87 -3.67 -0.02 0.50 16 4 C -0.14 -0.66 5.74 -27.36 -0.16 -0.82 16 5 C -0.12 -0.71 5.27 -27.97 -0.15 -0.86 16 6 C -0.10 -0.94 4.81 -27.32 -0.13 -1.07 16 7 C -0.13 -1.42 2.22 -92.54 -0.21 -1.63 16 8 H 0.12 0.94 6.77 -51.93 -0.35 0.59 16 9 C 0.53 8.29 6.57 -10.99 -0.07 8.22 16 10 O -0.54 -10.23 15.51 5.56 0.09 -10.14 16 11 N -0.71 -11.14 4.55 -60.30 -0.27 -11.42 16 12 C 0.13 2.32 4.56 -4.04 -0.02 2.30 16 13 C -0.06 -1.23 0.54 -154.51 -0.08 -1.31 16 14 C -0.13 -2.44 8.05 37.16 0.30 -2.14 16 15 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 16 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 17 C -0.51 -13.99 8.20 -34.44 -0.28 -14.28 16 18 H 0.08 2.26 5.92 -52.49 -0.31 1.95 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.91 -27.74 13.96 55.43 0.77 -26.96 16 21 Si 0.87 22.00 27.47 -169.99 -4.67 17.34 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 25 C 0.52 6.24 6.50 -11.25 -0.07 6.17 16 26 O -0.52 -8.56 15.34 5.55 0.09 -8.47 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.74 7.38 -51.93 -0.38 0.35 16 29 H 0.07 0.32 8.03 -51.93 -0.42 -0.10 16 30 H 0.09 0.25 7.92 -51.93 -0.41 -0.16 16 31 H 0.08 0.33 6.72 -51.93 -0.35 -0.02 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 34 H 0.07 0.32 7.88 -51.93 -0.41 -0.09 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 37 H 0.09 1.03 7.13 -51.93 -0.37 0.66 16 38 H 0.40 5.71 6.06 -40.82 -0.25 5.46 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.03 0.55 6.86 -51.93 -0.36 0.20 16 42 H 0.07 1.49 6.62 -51.93 -0.34 1.14 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 46 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 47 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 48 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -34.69 372.50 -7.43 -42.12 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.37 Total: 1.57 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.16 Total: -4.00 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.02 Total: -44.03 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.17 Total: -18.62 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.69 -7.43 -42.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602155608.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.310 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds