Wall clock time and date at job start Fri Apr 10 2020 22:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47192 * 119.78778 * 2 1 4 4 C 1.52987 * 108.66450 * 108.02199 * 3 2 1 5 5 C 1.51777 * 110.84670 * 86.49121 * 4 3 2 6 6 C 1.51783 * 113.78628 * 292.89959 * 5 4 3 7 7 C 1.53055 * 110.70337 * 66.91738 * 6 5 4 8 8 H 1.09000 * 109.63365 * 34.73936 * 7 6 5 9 9 C 1.50699 * 109.80164 * 155.24247 * 7 6 5 10 10 O 1.21283 * 119.99541 * 359.10603 * 9 7 6 11 11 N 1.34774 * 120.00230 * 179.09847 * 9 7 6 12 12 C 1.46498 * 119.99983 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47070 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47331 * 300.00145 * 13 12 11 15 15 C 1.53004 * 109.47192 * 60.00247 * 13 12 11 16 16 C 1.52995 * 109.47308 * 180.02562 * 13 12 11 17 17 C 1.50704 * 109.47474 * 179.97438 * 16 13 12 18 18 H 1.08000 * 119.99982 * 0.02562 * 17 16 13 19 19 C 1.37873 * 120.00045 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00056 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47352 * 89.99420 * 21 19 17 23 23 H 1.48500 * 109.47098 * 209.99745 * 21 19 17 24 24 H 1.48507 * 109.46705 * 329.99564 * 21 19 17 25 25 C 1.33371 * 119.78698 * 179.97438 * 2 1 3 26 26 O 1.21285 * 119.89141 * 0.29942 * 25 2 1 27 27 H 1.08999 * 109.47426 * 90.00265 * 1 2 3 28 28 H 1.09005 * 109.47148 * 209.99784 * 1 2 3 29 29 H 1.09001 * 109.47081 * 330.00340 * 1 2 3 30 30 H 1.08997 * 109.60522 * 348.26401 * 3 2 1 31 31 H 1.09001 * 109.74188 * 227.85152 * 3 2 1 32 32 H 1.09002 * 109.19620 * 206.83084 * 4 3 2 33 33 H 1.08998 * 109.19235 * 326.15550 * 4 3 2 34 34 H 1.09002 * 108.61591 * 54.09003 * 5 4 3 35 35 H 1.09000 * 108.61957 * 171.85107 * 5 4 3 36 36 H 1.09001 * 109.27816 * 306.57980 * 6 5 4 37 37 H 1.08995 * 109.17365 * 187.18839 * 6 5 4 38 38 H 0.97005 * 119.99729 * 0.02562 * 11 9 7 39 39 H 1.08997 * 109.47267 * 300.00416 * 12 11 9 40 40 H 1.09000 * 109.47135 * 60.00722 * 12 11 9 41 41 H 1.09000 * 109.47080 * 59.99694 * 14 13 12 42 42 H 1.08999 * 109.47711 * 179.97438 * 14 13 12 43 43 H 1.08995 * 109.47217 * 300.00304 * 14 13 12 44 44 H 1.08997 * 109.47175 * 59.99932 * 15 13 12 45 45 H 1.09004 * 109.46788 * 180.02562 * 15 13 12 46 46 H 1.09000 * 109.46775 * 300.00034 * 15 13 12 47 47 H 1.08996 * 109.47544 * 300.00063 * 16 13 12 48 48 H 1.09000 * 109.47143 * 60.00205 * 16 13 12 49 49 H 0.96994 * 120.00043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1962 1.2774 0.0000 4 6 2.8286 1.4796 1.3783 5 6 4.1869 0.8065 1.4533 6 6 4.1239 -0.7085 1.3856 7 6 3.6417 -1.1690 0.0079 8 1 4.0168 -0.4895 -0.7574 9 6 4.1389 -2.5649 -0.2667 10 8 4.8289 -3.1348 0.5519 11 7 3.8166 -3.1800 -1.4218 12 6 4.3004 -4.5367 -1.6889 13 6 3.7961 -4.9977 -3.0578 14 6 2.2661 -4.9909 -3.0665 15 6 4.3165 -4.0486 -4.1392 16 6 4.3008 -6.4149 -3.3366 17 6 3.8035 -6.8692 -4.6847 18 1 3.1892 -6.2126 -5.2831 19 6 4.1335 -8.1226 -5.1547 20 7 3.7000 -8.5190 -6.3314 21 14 5.1965 -9.2581 -4.1201 22 1 4.3294 -10.0868 -3.2448 23 1 5.9894 -10.1423 -5.0115 24 1 6.1160 -8.4475 -3.2816 25 6 2.1275 -1.1575 0.0005 26 8 1.5152 -2.2044 -0.0045 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.5054 2.0943 -0.2089 31 1 2.9766 1.2550 -0.7606 32 1 2.9467 2.5469 1.5654 33 1 2.1746 1.0527 2.1387 34 1 4.8003 1.1677 0.6279 35 1 4.6657 1.0925 2.3898 36 1 3.4357 -1.0745 2.1475 37 1 5.1169 -1.1168 1.5732 38 1 3.2649 -2.7240 -2.0765 39 1 5.3904 -4.5415 -1.6831 40 1 3.9300 -5.2129 -0.9184 41 1 1.9061 -3.9814 -2.8677 42 1 1.9067 -5.3188 -4.0419 43 1 1.8954 -5.6670 -2.2962 44 1 5.4064 -4.0535 -4.1331 45 1 3.9567 -4.3768 -5.1144 46 1 3.9565 -3.0391 -3.9404 47 1 5.3907 -6.4203 -3.3303 48 1 3.9296 -7.0908 -2.5662 49 1 3.9319 -9.4009 -6.6619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602155608.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:12 Heat of formation + Delta-G solvation = -113.981274 kcal Electronic energy + Delta-G solvation = -27180.930501 eV Core-core repulsion = 23527.245455 eV Total energy + Delta-G solvation = -3653.685047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03014 -40.36780 -38.75722 -37.77645 -35.56601 -35.22638 -34.01063 -32.32759 -29.86003 -29.37078 -28.03711 -27.95306 -26.55775 -24.99634 -24.21105 -22.00204 -21.46765 -20.35228 -19.51587 -18.91966 -18.57180 -18.26334 -17.22658 -16.71032 -16.40486 -16.23441 -16.08784 -15.45954 -15.35126 -15.17367 -14.82567 -14.72114 -14.49118 -14.22409 -14.21370 -14.02935 -13.80785 -13.56081 -13.32813 -12.99314 -12.94722 -12.86576 -12.64701 -12.55237 -12.34224 -12.19381 -11.98656 -11.78503 -11.67320 -11.55770 -11.52801 -11.34465 -10.98659 -10.90230 -10.86848 -10.71942 -10.06652 -9.72853 -8.23734 -6.23933 1.35015 1.36966 1.39061 1.47665 1.50142 2.06704 2.21760 2.38007 3.11444 3.35442 3.53222 3.69189 3.85240 3.90787 4.01561 4.09632 4.12115 4.20162 4.31594 4.41622 4.47956 4.60296 4.63983 4.66926 4.70179 4.73521 4.79201 4.90825 4.95075 4.97880 5.04103 5.05325 5.06210 5.21162 5.25547 5.27583 5.33180 5.36214 5.44135 5.44905 5.51630 5.52370 5.64839 5.73617 6.27191 6.36386 6.50088 6.82226 7.05593 7.17001 7.38686 8.91942 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025372 B = 0.003104 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.301692 B = 9017.942005 C = 9563.368199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.602 5.602 3 C 0.097 3.903 4 C -0.137 4.137 5 C -0.118 4.118 6 C -0.094 4.094 7 C -0.120 4.120 8 H 0.155 0.845 9 C 0.525 3.475 10 O -0.580 6.580 11 N -0.702 5.702 12 C 0.139 3.861 13 C -0.058 4.058 14 C -0.118 4.118 15 C -0.121 4.121 16 C -0.002 4.002 17 C -0.503 4.503 18 H 0.052 0.948 19 C 0.007 3.993 20 N -0.950 5.950 21 Si 0.934 3.066 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.251 1.251 25 C 0.516 3.484 26 O -0.579 6.579 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.407 0.593 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.065 0.935 47 H 0.019 0.981 48 H 0.009 0.991 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 29.041 14.996 32.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.334 5.334 3 C -0.023 4.023 4 C -0.176 4.176 5 C -0.155 4.155 6 C -0.132 4.132 7 C -0.144 4.144 8 H 0.173 0.827 9 C 0.312 3.688 10 O -0.460 6.460 11 N -0.352 5.352 12 C 0.015 3.985 13 C -0.058 4.058 14 C -0.175 4.175 15 C -0.178 4.178 16 C -0.040 4.040 17 C -0.541 4.541 18 H 0.070 0.930 19 C -0.189 4.189 20 N -0.592 5.592 21 Si 0.759 3.241 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.175 1.175 25 C 0.303 3.697 26 O -0.460 6.460 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.243 0.757 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.038 0.962 48 H 0.027 0.973 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.052 27.978 15.446 32.025 hybrid contribution -0.050 -1.403 -0.209 1.419 sum -2.102 26.576 15.237 30.706 Atomic orbital electron populations 1.21818 0.78265 1.03577 1.02627 1.47833 1.07754 1.06448 1.71321 1.22309 0.97705 0.83969 0.98359 1.21826 0.96067 1.02851 0.96814 1.21195 0.98410 0.91451 1.04491 1.21125 1.02192 0.98158 0.91763 1.21769 0.93258 0.95200 1.04145 0.82719 1.20461 0.79228 0.88214 0.80930 1.90659 1.40859 1.67583 1.46904 1.45878 1.52763 1.16621 1.19925 1.21289 0.98453 0.82563 0.96204 1.20559 0.95961 0.96305 0.93019 1.21637 0.94520 1.00264 1.01125 1.21678 1.00512 0.97509 0.98119 1.19551 0.96130 0.92969 0.95319 1.21347 1.30687 1.00032 1.01997 0.92980 1.25818 0.97386 0.99812 0.95934 1.70036 1.48219 1.20546 1.20412 0.85894 0.79856 0.79231 0.79093 1.19993 1.21131 1.17484 1.20161 0.89383 0.83975 0.76217 1.90799 1.70311 1.33209 1.51643 0.91867 0.93046 0.87808 0.86377 0.88764 0.87446 0.92597 0.89507 0.90275 0.93463 0.90398 0.75651 0.91815 0.93674 0.92428 0.93316 0.94494 0.92993 0.93396 0.91634 0.96244 0.97300 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.35 127.77 1.32 2.32 16 2 N -0.60 -8.48 2.85 -846.09 -2.42 -10.89 16 3 C 0.10 0.49 5.87 86.24 0.51 1.00 16 4 C -0.14 -0.70 5.74 30.19 0.17 -0.53 16 5 C -0.12 -0.96 5.27 29.79 0.16 -0.80 16 6 C -0.09 -1.67 4.81 30.21 0.15 -1.52 16 7 C -0.12 -2.41 2.22 -12.04 -0.03 -2.43 16 8 H 0.16 1.87 6.77 -2.39 -0.02 1.85 16 9 C 0.53 16.02 6.57 87.66 0.58 16.59 16 10 O -0.58 -22.08 15.51 -3.04 -0.05 -22.13 16 11 N -0.70 -21.39 4.55 -463.07 -2.11 -23.49 16 12 C 0.14 5.01 4.56 86.38 0.39 5.41 16 13 C -0.06 -2.25 0.54 -52.18 -0.03 -2.28 16 14 C -0.12 -4.59 8.05 71.98 0.58 -4.01 16 15 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 16 C 0.00 -0.09 3.11 29.85 0.09 0.01 16 17 C -0.50 -28.23 8.20 25.60 0.21 -28.02 16 18 H 0.05 3.14 5.92 -2.91 -0.02 3.12 16 19 C 0.01 0.40 5.47 84.65 0.46 0.86 16 20 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 21 Si 0.93 45.66 27.47 68.60 1.88 47.55 16 22 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 25 C 0.52 11.67 6.50 88.11 0.57 12.24 16 26 O -0.58 -19.09 15.34 -3.05 -0.05 -19.13 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.95 7.38 -2.38 -0.02 0.93 16 29 H 0.10 0.58 8.03 -2.39 -0.02 0.56 16 30 H 0.12 -0.01 7.92 -2.39 -0.02 -0.03 16 31 H 0.09 0.25 6.72 -2.39 -0.02 0.24 16 32 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.06 0.50 8.05 -2.39 -0.02 0.48 16 34 H 0.09 0.41 7.88 -2.39 -0.02 0.39 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.05 1.03 7.86 -2.39 -0.02 1.01 16 37 H 0.08 1.65 7.13 -2.39 -0.02 1.64 16 38 H 0.41 10.88 6.06 -92.70 -0.56 10.31 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.92 6.86 -2.39 -0.02 1.90 16 42 H 0.05 2.09 6.62 -2.39 -0.02 2.08 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.05 1.92 6.62 -2.38 -0.02 1.90 16 46 H 0.06 1.80 6.86 -2.39 -0.02 1.78 16 47 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 48 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 49 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -79.50 372.50 3.60 -75.90 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.32 Total: 16.43 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 5.72 Total: -4.82 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -4.22 Total: -93.79 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -0.09 Total: -41.26 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.55 kcal Total: -79.50 3.60 -75.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602155608.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.084 kcal (2) G-P(sol) polarization free energy of solvation -79.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds