Wall clock time and date at job start Fri Apr 10 2020 22:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 C 1.53004 * 109.46888 * 119.99679 * 2 1 3 5 5 C 1.53001 * 109.46879 * 174.99980 * 4 2 1 6 6 N 1.46507 * 109.47123 * 179.97438 * 5 4 2 7 7 C 1.46495 * 119.99804 * 270.00272 * 6 5 4 8 8 C 1.50703 * 109.47041 * 269.99744 * 7 6 5 9 9 H 1.07995 * 119.99728 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99945 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99831 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00156 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47193 * 90.00146 * 12 10 8 14 14 H 1.48499 * 109.47059 * 210.00173 * 12 10 8 15 15 H 1.48496 * 109.47193 * 330.00051 * 12 10 8 16 16 C 1.34777 * 119.99727 * 89.99610 * 6 5 4 17 17 O 1.21279 * 120.00153 * 0.02562 * 16 6 5 18 18 C 1.50697 * 119.99487 * 180.02562 * 16 6 5 19 19 C 1.53001 * 109.46931 * 180.02562 * 18 16 6 20 20 N 1.46498 * 109.47601 * 179.97438 * 19 18 16 21 21 C 1.46768 * 124.34879 * 89.99607 * 20 19 18 22 22 C 1.54480 * 105.55098 * 197.08340 * 21 20 19 23 23 C 1.54631 * 101.76472 * 334.54015 * 22 21 20 24 24 C 1.34621 * 124.47196 * 270.02849 * 20 19 18 25 25 O 1.21286 * 124.90539 * 359.55259 * 24 20 19 26 26 H 1.09005 * 109.47158 * 300.00757 * 1 2 3 27 27 H 1.08999 * 109.46916 * 60.00302 * 1 2 3 28 28 H 1.09004 * 109.47314 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99580 * 2 1 3 30 30 H 1.08999 * 109.46392 * 299.99672 * 3 2 1 31 31 H 1.08994 * 109.47290 * 59.99858 * 3 2 1 32 32 H 1.09003 * 109.46885 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47251 * 54.99852 * 4 2 1 34 34 H 1.08999 * 109.47344 * 294.99857 * 4 2 1 35 35 H 1.08996 * 109.47336 * 60.00416 * 5 4 2 36 36 H 1.08993 * 109.47137 * 299.99641 * 5 4 2 37 37 H 1.09002 * 109.47687 * 29.99634 * 7 6 5 38 38 H 1.09003 * 109.47324 * 149.99716 * 7 6 5 39 39 H 0.97004 * 119.99864 * 179.97438 * 11 10 8 40 40 H 1.08994 * 109.47407 * 60.00659 * 18 16 6 41 41 H 1.08998 * 109.47731 * 300.00045 * 18 16 6 42 42 H 1.09002 * 109.47341 * 60.00111 * 19 18 16 43 43 H 1.08998 * 109.47560 * 299.99991 * 19 18 16 44 44 H 1.09002 * 110.24468 * 78.03845 * 21 20 19 45 45 H 1.09002 * 110.24463 * 316.12602 * 21 20 19 46 46 H 1.08995 * 110.97082 * 92.66028 * 22 21 20 47 47 H 1.09001 * 110.96924 * 216.42557 * 22 21 20 48 48 H 1.09000 * 110.48694 * 143.47575 * 23 22 21 49 49 H 1.08994 * 110.49106 * 266.12244 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0532 -1.5210 2.3846 7 6 4.4015 -0.7527 3.5823 8 6 5.8555 -0.3608 3.5224 9 1 6.4596 -0.6551 2.6769 10 6 6.4146 0.3724 4.5474 11 7 7.6835 0.7140 4.4954 12 14 5.3698 0.8807 6.0101 13 1 5.4391 -0.1702 7.0570 14 1 5.8792 2.1623 6.5607 15 1 3.9605 1.0541 5.5754 16 6 4.1818 -2.8627 2.3834 17 8 3.8937 -3.4986 1.3918 18 6 4.6837 -3.5724 3.6144 19 6 4.7358 -5.0784 3.3492 20 7 5.2242 -5.7685 4.5456 21 6 4.3622 -6.2685 5.6231 22 6 5.3002 -6.5064 6.8272 23 6 6.6589 -6.7405 6.1271 24 6 6.5207 -6.0261 4.8007 25 8 7.4438 -5.7281 4.0727 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6053 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.9994 0.1675 1.1422 36 1 3.8531 -1.3940 0.3005 37 1 3.7850 0.1449 3.6303 38 1 4.2257 -1.3621 4.4688 39 1 8.0768 1.2302 5.2164 40 1 4.0108 -3.3732 4.4484 41 1 5.6828 -3.2123 3.8597 42 1 5.4089 -5.2774 2.5153 43 1 3.7369 -5.4389 3.1038 44 1 3.8881 -7.2033 5.3237 45 1 3.6051 -5.5261 5.8757 46 1 5.3393 -5.6276 7.4708 47 1 4.9950 -7.3879 7.3912 48 1 7.4694 -6.3057 6.7120 49 1 6.8289 -7.8057 5.9706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609142978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:15 Heat of formation + Delta-G solvation = -91.943835 kcal Electronic energy + Delta-G solvation = -26716.062780 eV Core-core repulsion = 23063.333349 eV Total energy + Delta-G solvation = -3652.729431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26163 -39.23434 -36.69693 -36.24211 -34.83045 -33.59618 -32.50412 -30.32265 -28.97472 -27.54862 -27.46358 -27.02074 -24.50284 -22.78472 -22.24500 -21.82856 -19.80127 -19.20065 -18.28404 -17.05891 -16.91413 -16.54786 -15.80250 -15.59973 -15.39994 -15.02257 -14.60160 -14.16570 -13.95290 -13.75804 -13.70502 -13.29984 -13.22570 -12.86598 -12.76031 -12.63671 -12.46195 -12.21605 -12.06630 -12.05849 -11.70809 -11.60327 -11.54822 -11.21617 -11.09231 -10.87910 -10.83003 -10.73808 -10.62409 -10.50155 -10.30925 -10.15189 -9.62816 -9.60975 -9.18741 -8.72342 -8.57430 -7.75729 -6.20508 -4.22425 2.73561 3.08033 3.14849 3.22483 3.24178 3.32132 3.88180 4.25384 4.35778 4.40845 4.71816 4.98862 5.01187 5.05199 5.09567 5.10357 5.27360 5.31133 5.32696 5.41624 5.49659 5.59014 5.62362 5.68372 5.72412 5.78365 5.81858 5.85069 5.87927 5.94673 5.96381 6.06610 6.18585 6.21354 6.29080 6.33922 6.39117 6.48362 6.58512 6.58681 6.68138 6.71678 7.26503 7.33207 7.44177 8.11786 8.33608 8.40742 8.83179 8.91760 9.38023 10.92296 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.004609 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.628080 B = 6073.614301 C = 7903.070338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.589 5.589 7 C 0.210 3.790 8 C -0.542 4.542 9 H 0.078 0.922 10 C 0.077 3.923 11 N -0.888 5.888 12 Si 0.870 3.130 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.524 3.476 17 O -0.573 6.573 18 C -0.155 4.155 19 C 0.145 3.855 20 N -0.621 5.621 21 C 0.101 3.899 22 C -0.133 4.133 23 C -0.155 4.155 24 C 0.512 3.488 25 O -0.524 6.524 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.028 0.972 39 H 0.266 0.734 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.101 0.899 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.362 -9.387 2.729 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.318 5.318 7 C 0.088 3.912 8 C -0.580 4.580 9 H 0.096 0.904 10 C -0.127 4.127 11 N -0.526 5.526 12 Si 0.697 3.303 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.189 1.189 16 C 0.312 3.688 17 O -0.455 6.455 18 C -0.196 4.196 19 C 0.023 3.977 20 N -0.356 5.356 21 C -0.022 4.022 22 C -0.170 4.170 23 C -0.195 4.195 24 C 0.300 3.700 25 O -0.399 6.399 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.107 0.893 48 H 0.120 0.880 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.884 -9.388 1.871 15.260 hybrid contribution -0.400 0.599 1.062 1.283 sum -12.284 -8.790 2.933 15.387 Atomic orbital electron populations 1.21821 0.95593 1.01416 1.01340 1.21048 0.95331 0.96407 0.98501 1.21912 1.01787 0.95776 1.01298 1.21995 0.96563 1.00413 0.97585 1.21392 0.92770 0.97930 0.88371 1.47914 1.62884 1.05798 1.15236 1.19796 0.97172 0.91542 0.82657 1.21381 0.93331 1.35238 1.08035 0.90354 1.24884 0.94768 0.95200 0.97867 1.69898 1.11739 1.37761 1.33157 0.86942 0.81167 0.78774 0.83422 1.19945 1.20835 1.18902 1.20251 0.77064 0.82430 0.89033 1.90600 1.52878 1.66215 1.35759 1.21992 1.05099 0.95266 0.97199 1.21097 1.00671 0.90154 0.85734 1.48391 1.07372 1.57783 1.22042 1.22064 0.93802 0.99592 0.86789 1.22599 0.94045 1.03401 0.96997 1.22324 0.99586 1.02336 0.95264 1.20984 0.82492 0.78660 0.87886 1.90769 1.42067 1.53636 1.53414 0.92890 0.93003 0.92918 0.91196 0.93156 0.92724 0.91951 0.92000 0.92044 0.90116 0.90851 0.94874 0.95454 0.92362 0.89515 0.87131 0.89342 0.90025 0.91193 0.90369 0.89828 0.89345 0.88043 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.09 -1.19 2.92 -90.62 -0.26 -1.45 16 3 C -0.15 -1.84 8.95 37.16 0.33 -1.51 16 4 C -0.13 -1.92 5.01 -26.73 -0.13 -2.05 16 5 C 0.12 2.15 5.16 -4.04 -0.02 2.13 16 6 N -0.59 -12.10 2.46 -175.06 -0.43 -12.53 16 7 C 0.21 4.64 4.03 -5.20 -0.02 4.62 16 8 C -0.54 -14.53 9.84 -34.44 -0.34 -14.87 16 9 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 10 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 11 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 12 Si 0.87 19.88 27.47 -169.99 -4.67 15.21 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 16 C 0.52 10.70 7.67 -10.99 -0.08 10.62 16 17 O -0.57 -12.49 15.56 5.56 0.09 -12.40 16 18 C -0.15 -2.81 4.58 -27.88 -0.13 -2.94 16 19 C 0.15 2.33 5.23 -4.04 -0.02 2.31 16 20 N -0.62 -8.75 2.94 -172.35 -0.51 -9.26 16 21 C 0.10 0.95 7.34 -3.12 -0.02 0.92 16 22 C -0.13 -1.05 7.18 -25.10 -0.18 -1.23 16 23 C -0.15 -1.61 6.86 -26.74 -0.18 -1.80 16 24 C 0.51 8.15 8.03 -10.77 -0.09 8.06 16 25 O -0.52 -11.01 17.60 5.55 0.10 -10.92 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.48 6.49 -51.93 -0.34 1.15 16 36 H 0.07 1.38 7.42 -51.93 -0.39 1.00 16 37 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 38 H 0.03 0.58 5.87 -51.93 -0.30 0.28 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.09 1.40 7.40 -51.93 -0.38 1.01 16 41 H 0.11 2.38 8.00 -51.93 -0.42 1.96 16 42 H 0.09 1.63 7.89 -51.93 -0.41 1.22 16 43 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -33.40 393.43 -8.50 -41.90 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.88 Total: 4.03 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.91 Total: 3.58 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.16 Total: -47.34 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.18 Total: -23.32 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.67 Total: 15.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.40 -8.50 -41.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.040 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds