Wall clock time and date at job start Fri Apr 10 2020 22:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47245 * 2 1 4 4 C 1.53004 * 109.46888 * 119.99679 * 2 1 3 5 5 C 1.53001 * 109.46879 * 174.99980 * 4 2 1 6 6 N 1.46507 * 109.47123 * 179.97438 * 5 4 2 7 7 C 1.46495 * 119.99804 * 270.00272 * 6 5 4 8 8 C 1.50703 * 109.47041 * 269.99744 * 7 6 5 9 9 H 1.07995 * 119.99728 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99945 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99831 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00156 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47193 * 90.00146 * 12 10 8 14 14 H 1.48499 * 109.47059 * 210.00173 * 12 10 8 15 15 H 1.48496 * 109.47193 * 330.00051 * 12 10 8 16 16 C 1.34777 * 119.99727 * 89.99610 * 6 5 4 17 17 O 1.21279 * 120.00153 * 0.02562 * 16 6 5 18 18 C 1.50697 * 119.99487 * 180.02562 * 16 6 5 19 19 C 1.53001 * 109.46931 * 180.02562 * 18 16 6 20 20 N 1.46498 * 109.47601 * 179.97438 * 19 18 16 21 21 C 1.46768 * 124.34879 * 89.99607 * 20 19 18 22 22 C 1.54480 * 105.55098 * 197.08340 * 21 20 19 23 23 C 1.54631 * 101.76472 * 334.54015 * 22 21 20 24 24 C 1.34621 * 124.47196 * 270.02849 * 20 19 18 25 25 O 1.21286 * 124.90539 * 359.55259 * 24 20 19 26 26 H 1.09005 * 109.47158 * 300.00757 * 1 2 3 27 27 H 1.08999 * 109.46916 * 60.00302 * 1 2 3 28 28 H 1.09004 * 109.47314 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99580 * 2 1 3 30 30 H 1.08999 * 109.46392 * 299.99672 * 3 2 1 31 31 H 1.08994 * 109.47290 * 59.99858 * 3 2 1 32 32 H 1.09003 * 109.46885 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47251 * 54.99852 * 4 2 1 34 34 H 1.08999 * 109.47344 * 294.99857 * 4 2 1 35 35 H 1.08996 * 109.47336 * 60.00416 * 5 4 2 36 36 H 1.08993 * 109.47137 * 299.99641 * 5 4 2 37 37 H 1.09002 * 109.47687 * 29.99634 * 7 6 5 38 38 H 1.09003 * 109.47324 * 149.99716 * 7 6 5 39 39 H 0.97004 * 119.99864 * 179.97438 * 11 10 8 40 40 H 1.08994 * 109.47407 * 60.00659 * 18 16 6 41 41 H 1.08998 * 109.47731 * 300.00045 * 18 16 6 42 42 H 1.09002 * 109.47341 * 60.00111 * 19 18 16 43 43 H 1.08998 * 109.47560 * 299.99991 * 19 18 16 44 44 H 1.09002 * 110.24468 * 78.03845 * 21 20 19 45 45 H 1.09002 * 110.24463 * 316.12602 * 21 20 19 46 46 H 1.08995 * 110.97082 * 92.66028 * 22 21 20 47 47 H 1.09001 * 110.96924 * 216.42557 * 22 21 20 48 48 H 1.09000 * 110.48694 * 143.47575 * 23 22 21 49 49 H 1.08994 * 110.49106 * 266.12244 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0532 -1.5210 2.3846 7 6 4.4015 -0.7527 3.5823 8 6 5.8555 -0.3608 3.5224 9 1 6.4596 -0.6551 2.6769 10 6 6.4146 0.3724 4.5474 11 7 7.6835 0.7140 4.4954 12 14 5.3698 0.8807 6.0101 13 1 5.4391 -0.1702 7.0570 14 1 5.8792 2.1623 6.5607 15 1 3.9605 1.0541 5.5754 16 6 4.1818 -2.8627 2.3834 17 8 3.8937 -3.4986 1.3918 18 6 4.6837 -3.5724 3.6144 19 6 4.7358 -5.0784 3.3492 20 7 5.2242 -5.7685 4.5456 21 6 4.3622 -6.2685 5.6231 22 6 5.3002 -6.5064 6.8272 23 6 6.6589 -6.7405 6.1271 24 6 6.5207 -6.0261 4.8007 25 8 7.4438 -5.7281 4.0727 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6053 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.9994 0.1675 1.1422 36 1 3.8531 -1.3940 0.3005 37 1 3.7850 0.1449 3.6303 38 1 4.2257 -1.3621 4.4688 39 1 8.0768 1.2302 5.2164 40 1 4.0108 -3.3732 4.4484 41 1 5.6828 -3.2123 3.8597 42 1 5.4089 -5.2774 2.5153 43 1 3.7369 -5.4389 3.1038 44 1 3.8881 -7.2033 5.3237 45 1 3.6051 -5.5261 5.8757 46 1 5.3393 -5.6276 7.4708 47 1 4.9950 -7.3879 7.3912 48 1 7.4694 -6.3057 6.7120 49 1 6.8289 -7.8057 5.9706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609142978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:14 Heat of formation + Delta-G solvation = -112.906096 kcal Electronic energy + Delta-G solvation = -26716.971772 eV Core-core repulsion = 23063.333349 eV Total energy + Delta-G solvation = -3653.638423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45894 -40.79304 -37.97476 -37.47719 -36.44335 -34.77980 -34.52036 -31.62937 -30.47212 -29.11974 -28.43736 -27.98922 -25.79879 -24.61858 -23.65324 -22.68237 -20.88866 -20.38618 -19.94132 -19.11686 -18.33791 -17.61549 -17.18740 -17.08318 -16.79368 -16.32451 -15.95992 -15.84368 -15.14010 -14.99269 -14.72852 -14.70271 -14.41352 -14.32375 -14.12646 -13.99115 -13.67903 -13.66061 -13.27064 -13.17949 -13.06301 -12.93973 -12.69029 -12.51598 -12.34809 -12.16384 -12.15998 -12.11369 -11.81892 -11.79987 -11.66371 -11.56716 -11.41478 -10.93559 -10.84617 -10.74896 -9.74576 -9.47145 -8.33115 -6.42270 1.35923 1.38653 1.48781 1.51655 1.63886 1.94361 2.31462 2.35771 3.00414 3.44207 3.65393 3.69784 3.91743 3.92299 3.97987 4.00903 4.07609 4.10282 4.26373 4.30729 4.40028 4.55537 4.64230 4.66239 4.69506 4.71904 4.74683 4.78593 4.83628 4.84813 4.89587 4.93304 4.94739 5.04137 5.11656 5.12166 5.14688 5.26579 5.32456 5.40854 5.47954 5.51013 5.56718 5.66313 6.13175 6.16365 6.54979 6.64370 7.12678 7.17641 7.28106 8.84109 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.004609 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.628080 B = 6073.614301 C = 7903.070338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.113 4.113 5 C 0.115 3.885 6 N -0.595 5.595 7 C 0.221 3.779 8 C -0.546 4.546 9 H 0.019 0.981 10 C 0.013 3.987 11 N -0.946 5.946 12 Si 0.947 3.053 13 H -0.259 1.259 14 H -0.284 1.284 15 H -0.232 1.232 16 C 0.517 3.483 17 O -0.589 6.589 18 C -0.144 4.144 19 C 0.153 3.847 20 N -0.621 5.621 21 C 0.091 3.909 22 C -0.119 4.119 23 C -0.147 4.147 24 C 0.491 3.509 25 O -0.595 6.595 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.269 0.731 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.128 0.872 48 H 0.101 0.899 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.355 -10.030 5.407 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.152 4.152 5 C -0.007 4.007 6 N -0.324 5.324 7 C 0.099 3.901 8 C -0.585 4.585 9 H 0.037 0.963 10 C -0.185 4.185 11 N -0.585 5.585 12 Si 0.768 3.232 13 H -0.184 1.184 14 H -0.210 1.210 15 H -0.155 1.155 16 C 0.306 3.694 17 O -0.472 6.472 18 C -0.184 4.184 19 C 0.030 3.970 20 N -0.354 5.354 21 C -0.030 4.030 22 C -0.156 4.156 23 C -0.186 4.186 24 C 0.281 3.719 25 O -0.476 6.476 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.102 0.898 47 H 0.146 0.854 48 H 0.119 0.881 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.943 -10.057 4.557 19.393 hybrid contribution 0.931 0.769 0.092 1.211 sum -15.012 -9.288 4.648 18.255 Atomic orbital electron populations 1.21775 0.93611 1.01886 1.02398 1.21047 0.96911 0.96220 0.96960 1.21899 1.00660 0.95719 1.02372 1.21873 0.93551 1.00563 0.99167 1.21518 0.95254 0.96913 0.87056 1.48018 1.62868 1.05988 1.15541 1.19622 0.93979 0.92563 0.83983 1.21534 0.95470 1.35190 1.06264 0.96290 1.25939 0.96076 0.94910 1.01595 1.70089 1.14426 1.39239 1.34733 0.85731 0.80415 0.78356 0.78663 1.18359 1.21007 1.15471 1.20664 0.76690 0.82477 0.89563 1.90580 1.53638 1.66492 1.36483 1.21904 1.03089 0.96334 0.97121 1.20874 1.01017 0.89153 0.85981 1.48592 1.07867 1.56621 1.22326 1.22494 0.93680 1.01085 0.85698 1.22671 0.91434 1.05262 0.96276 1.22376 1.01513 1.02839 0.91916 1.22141 0.82241 0.78242 0.89282 1.90720 1.44243 1.56632 1.55974 0.92307 0.91495 0.92768 0.91636 0.91380 0.92370 0.93716 0.92544 0.91474 0.90865 0.92344 0.93215 0.93376 0.92254 0.86535 0.91162 0.93024 0.87455 0.88491 0.88881 0.89800 0.85357 0.88059 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.19 71.98 0.66 -2.00 16 2 C -0.09 -2.21 2.92 -10.79 -0.03 -2.24 16 3 C -0.15 -3.45 8.95 71.98 0.64 -2.81 16 4 C -0.11 -3.29 5.01 30.60 0.15 -3.14 16 5 C 0.12 4.27 5.16 86.38 0.45 4.72 16 6 N -0.59 -24.77 2.46 -826.16 -2.03 -26.80 16 7 C 0.22 9.62 4.03 85.63 0.35 9.97 16 8 C -0.55 -30.47 9.84 25.60 0.25 -30.21 16 9 H 0.02 1.24 8.06 -2.91 -0.02 1.22 16 10 C 0.01 0.74 5.47 84.65 0.46 1.21 16 11 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 12 Si 0.95 40.10 27.47 68.60 1.88 41.99 16 13 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.23 -8.57 6.54 99.48 0.65 -7.92 16 16 C 0.52 21.56 7.67 87.66 0.67 22.23 16 17 O -0.59 -26.32 15.56 -3.03 -0.05 -26.36 16 18 C -0.14 -5.29 4.58 29.85 0.14 -5.15 16 19 C 0.15 4.96 5.23 86.38 0.45 5.42 16 20 N -0.62 -17.02 2.94 -817.66 -2.40 -19.42 16 21 C 0.09 1.38 7.34 86.83 0.64 2.02 16 22 C -0.12 -1.39 7.18 31.65 0.23 -1.16 16 23 C -0.15 -2.78 6.86 30.59 0.21 -2.57 16 24 C 0.49 15.91 8.03 87.87 0.71 16.62 16 25 O -0.59 -26.93 17.60 -3.05 -0.05 -26.98 16 26 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.17 6.57 -2.39 -0.02 1.16 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 2.79 6.49 -2.39 -0.02 2.78 16 36 H 0.06 2.31 7.42 -2.39 -0.02 2.29 16 37 H 0.05 2.04 7.13 -2.39 -0.02 2.02 16 38 H 0.05 1.93 5.87 -2.39 -0.01 1.91 16 39 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.12 3.52 7.40 -2.39 -0.02 3.50 16 41 H 0.07 3.20 8.00 -2.39 -0.02 3.18 16 42 H 0.05 2.04 7.89 -2.39 -0.02 2.02 16 43 H 0.11 2.92 8.10 -2.39 -0.02 2.90 16 44 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -80.39 393.43 4.47 -75.92 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.84 Total: 26.95 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.97 Total: 12.89 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -4.13 Total: -104.40 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -0.10 Total: -53.34 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.88 Total: 41.99 kcal Total: -80.39 4.47 -75.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.989 kcal (2) G-P(sol) polarization free energy of solvation -80.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds