Wall clock time and date at job start Fri Apr 10 2020 22:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47187 * 2 1 4 4 C 1.53007 * 109.46957 * 119.99582 * 2 1 3 5 5 C 1.52992 * 109.47392 * 174.99808 * 4 2 1 6 6 N 1.46500 * 109.47399 * 180.02562 * 5 4 2 7 7 C 1.46496 * 120.00025 * 270.00171 * 6 5 4 8 8 C 1.50697 * 109.47126 * 269.99879 * 7 6 5 9 9 H 1.08004 * 120.00054 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00029 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99890 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99932 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47488 * 59.99953 * 12 10 8 14 14 H 1.48504 * 109.46919 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47132 * 299.99831 * 12 10 8 16 16 C 1.34772 * 119.99760 * 90.00015 * 6 5 4 17 17 O 1.21281 * 119.99940 * 180.02562 * 16 6 5 18 18 C 1.50703 * 120.00069 * 0.02562 * 16 6 5 19 19 N 1.46506 * 109.46877 * 179.97438 * 18 16 6 20 20 C 1.46498 * 120.00239 * 269.72094 * 19 18 16 21 21 C 1.34777 * 119.99873 * 90.00288 * 19 18 16 22 22 O 1.21284 * 119.99754 * 359.97438 * 21 19 18 23 23 C 1.50696 * 120.00137 * 179.97438 * 21 19 18 24 24 C 1.53001 * 117.49887 * 248.61985 * 23 21 19 25 25 C 1.52994 * 59.99933 * 252.50574 * 24 23 21 26 26 H 1.08999 * 109.46617 * 300.00440 * 1 2 3 27 27 H 1.08998 * 109.46351 * 60.00153 * 1 2 3 28 28 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47353 * 239.99532 * 2 1 3 30 30 H 1.09000 * 109.47444 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47136 * 299.99744 * 3 2 1 32 32 H 1.09005 * 109.47385 * 59.99903 * 3 2 1 33 33 H 1.09001 * 109.47009 * 55.00028 * 4 2 1 34 34 H 1.08996 * 109.47044 * 295.00197 * 4 2 1 35 35 H 1.09001 * 109.46863 * 60.00131 * 5 4 2 36 36 H 1.09004 * 109.47053 * 300.00372 * 5 4 2 37 37 H 1.09004 * 109.46974 * 29.99659 * 7 6 5 38 38 H 1.08998 * 109.47423 * 149.99953 * 7 6 5 39 39 H 0.96999 * 120.00110 * 180.02562 * 11 10 8 40 40 H 1.09000 * 109.46978 * 60.00374 * 18 16 6 41 41 H 1.09000 * 109.46976 * 299.99619 * 18 16 6 42 42 H 1.08998 * 109.46661 * 89.99886 * 20 19 18 43 43 H 1.08993 * 109.47575 * 210.00600 * 20 19 18 44 44 H 1.09001 * 109.46870 * 330.00556 * 20 19 18 45 45 H 1.09004 * 115.54642 * 34.32831 * 23 21 19 46 46 H 1.09001 * 117.49733 * 0.02562 * 24 23 21 47 47 H 1.08997 * 117.49999 * 145.01700 * 24 23 21 48 48 H 1.09004 * 117.50553 * 252.50777 * 25 24 23 49 49 H 1.09012 * 117.51513 * 107.47863 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8311 1.1882 6 7 4.0530 -1.5222 2.3841 7 6 4.4014 -0.7549 3.5825 8 6 5.8553 -0.3631 3.5230 9 1 6.4594 -0.6559 2.6769 10 6 6.4145 0.3692 4.5488 11 7 5.6788 0.7262 5.5788 12 14 8.2165 0.8555 4.4748 13 1 8.4556 1.6876 3.2682 14 1 8.5697 1.6331 5.6896 15 1 9.0568 -0.3671 4.4074 16 6 4.1816 -2.8637 2.3818 17 8 4.5854 -3.4359 3.3720 18 6 3.8238 -3.6529 1.1488 19 7 4.0500 -5.0786 1.3988 20 6 5.3528 -5.6773 1.0983 21 6 3.0577 -5.8406 1.9000 22 8 1.9776 -5.3459 2.1444 23 6 3.2901 -7.3073 2.1566 24 6 2.5469 -8.3065 1.2678 25 6 2.1245 -8.1183 2.7262 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.9994 0.1675 1.1422 36 1 3.8531 -1.3941 0.3004 37 1 3.7849 0.1427 3.6312 38 1 4.2255 -1.3651 4.4684 39 1 6.0721 1.2417 6.3003 40 1 4.4465 -3.3272 0.3156 41 1 2.7744 -3.4886 0.9042 42 1 5.9955 -5.6081 1.9760 43 1 5.2179 -6.7247 0.8285 44 1 5.8145 -5.1445 0.2670 45 1 4.2956 -7.5739 2.4826 46 1 1.8901 -7.9030 0.4972 47 1 3.0632 -9.2307 1.0087 48 1 2.3630 -8.9187 3.4267 49 1 1.1895 -7.5908 2.9157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609147416.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:17 Heat of formation + Delta-G solvation = -55.421719 kcal Electronic energy + Delta-G solvation = -26915.332452 eV Core-core repulsion = 23264.186739 eV Total energy + Delta-G solvation = -3651.145714 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.20302 -38.84372 -36.80695 -36.18615 -35.23472 -34.36129 -32.61616 -29.50927 -28.81221 -27.06744 -26.81042 -26.37061 -23.89056 -23.22909 -22.57075 -22.23286 -19.83401 -19.13022 -18.34043 -17.44985 -16.71916 -16.37733 -16.18383 -15.31404 -15.22101 -14.92472 -14.48203 -14.37072 -14.20706 -13.75561 -13.63747 -13.39837 -12.90028 -12.62646 -12.60724 -12.44510 -12.34543 -12.18951 -12.09690 -11.77677 -11.65985 -11.46295 -11.26833 -11.14003 -10.87502 -10.78031 -10.72530 -10.57816 -10.53027 -10.48925 -10.28755 -10.10640 -9.72130 -9.60786 -9.31601 -8.41662 -8.31451 -7.60670 -6.02024 -4.06966 2.54676 2.99520 3.31458 3.36144 3.37658 3.45806 3.76277 4.03413 4.45770 4.46511 4.68292 4.77915 4.92519 4.99931 5.02800 5.07300 5.12351 5.23308 5.30506 5.33232 5.41339 5.46747 5.51608 5.55908 5.67105 5.68861 5.74949 5.80384 5.81929 5.83742 5.87715 5.97041 6.02023 6.07813 6.20065 6.22635 6.33031 6.43357 6.54745 6.62754 7.10983 7.43409 7.49271 7.58515 7.94204 8.26213 8.27569 8.46678 8.92227 9.12921 9.57751 11.05977 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009344 B = 0.004678 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.844887 B = 5983.927138 C = 8205.150842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.136 4.136 5 C 0.111 3.889 6 N -0.596 5.596 7 C 0.248 3.752 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.491 3.509 17 O -0.533 6.533 18 C 0.095 3.905 19 N -0.594 5.594 20 C 0.081 3.919 21 C 0.549 3.451 22 O -0.539 6.539 23 C -0.189 4.189 24 C -0.154 4.154 25 C -0.148 4.148 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.032 0.968 38 H 0.041 0.959 39 H 0.263 0.737 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 -10.997 -14.837 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.174 4.174 5 C -0.013 4.013 6 N -0.328 5.328 7 C 0.129 3.871 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.533 5.533 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.276 3.724 17 O -0.410 6.410 18 C -0.031 4.031 19 N -0.326 5.326 20 C -0.062 4.062 21 C 0.338 3.662 22 O -0.416 6.416 23 C -0.210 4.210 24 C -0.192 4.192 25 C -0.185 4.185 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.143 0.857 46 H 0.116 0.884 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.548 -10.913 -13.979 18.905 hybrid contribution 1.272 0.523 0.075 1.377 sum -5.276 -10.391 -13.904 18.142 Atomic orbital electron populations 1.21832 0.95496 1.01548 1.01475 1.21052 0.95508 0.96493 0.98099 1.21911 1.01636 0.95787 1.01452 1.22138 0.96306 1.00779 0.98222 1.21546 0.93311 0.98984 0.87507 1.48229 1.63314 1.05589 1.15653 1.19237 0.95371 0.90504 0.81972 1.21382 0.95416 1.33902 1.05705 0.92619 1.24930 0.98070 0.95934 0.95127 1.69926 1.36125 1.38242 1.09007 0.86580 0.85118 0.78499 0.77323 1.20265 1.21190 1.20269 1.20716 0.79082 0.82964 0.89632 1.90659 1.45840 1.69418 1.35061 1.21483 1.04002 0.80539 0.97097 1.47251 1.13147 1.08009 1.64202 1.21836 0.84305 0.98498 1.01581 1.19576 0.83495 0.87266 0.75885 1.90676 1.25347 1.74395 1.51217 1.22185 0.99732 0.90536 1.08568 1.22919 1.02551 0.99115 0.94602 1.22945 0.98539 1.01126 0.95930 0.92682 0.93042 0.92848 0.91435 0.92038 0.93221 0.92503 0.91992 0.91167 0.89634 0.92055 0.95050 0.94079 0.92694 0.88243 0.87586 0.91853 0.90828 0.91093 0.85742 0.88380 0.87925 0.87973 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.19 37.16 0.34 -1.22 16 2 C -0.09 -1.07 2.92 -90.62 -0.26 -1.33 16 3 C -0.15 -1.74 8.95 37.16 0.33 -1.40 16 4 C -0.14 -1.98 5.01 -26.73 -0.13 -2.11 16 5 C 0.11 1.80 4.97 -4.05 -0.02 1.78 16 6 N -0.60 -12.85 2.46 -175.07 -0.43 -13.28 16 7 C 0.25 6.63 5.16 -5.20 -0.03 6.60 16 8 C -0.53 -14.94 9.39 -34.44 -0.32 -15.27 16 9 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 12 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 C 0.49 10.63 7.74 -10.99 -0.09 10.55 16 17 O -0.53 -14.01 16.01 5.56 0.09 -13.92 16 18 C 0.10 1.52 4.48 -5.19 -0.02 1.50 16 19 N -0.59 -9.05 2.36 -182.95 -0.43 -9.48 16 20 C 0.08 0.92 10.05 59.85 0.60 1.52 16 21 C 0.55 8.93 7.46 -10.99 -0.08 8.85 16 22 O -0.54 -10.68 15.84 5.55 0.09 -10.60 16 23 C -0.19 -2.27 4.79 -91.77 -0.44 -2.71 16 24 C -0.15 -1.40 10.23 -26.73 -0.27 -1.67 16 25 C -0.15 -1.59 10.04 -26.74 -0.27 -1.86 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.93 7.22 -51.93 -0.38 0.56 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.45 6.50 -51.93 -0.34 1.11 16 36 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 37 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 38 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.10 1.26 7.15 -51.93 -0.37 0.89 16 41 H 0.11 1.66 6.47 -51.93 -0.34 1.33 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.62 6.64 -51.93 -0.34 0.27 16 44 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 45 H 0.12 1.30 7.27 -51.93 -0.38 0.92 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.11 1.34 7.67 -51.92 -0.40 0.95 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -36.18 397.63 -8.36 -44.54 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.62 Total: 1.14 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.76 Total: 4.89 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.13 Total: -48.91 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.18 Total: -24.52 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.18 -8.36 -44.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609147416.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.880 kcal (2) G-P(sol) polarization free energy of solvation -36.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds