Wall clock time and date at job start Fri Apr 10 2020 22:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47187 * 2 1 4 4 C 1.53007 * 109.46957 * 119.99582 * 2 1 3 5 5 C 1.52992 * 109.47392 * 174.99808 * 4 2 1 6 6 N 1.46500 * 109.47399 * 180.02562 * 5 4 2 7 7 C 1.46496 * 120.00025 * 270.00171 * 6 5 4 8 8 C 1.50697 * 109.47126 * 269.99879 * 7 6 5 9 9 H 1.08004 * 120.00054 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00029 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99890 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99932 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47488 * 59.99953 * 12 10 8 14 14 H 1.48504 * 109.46919 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47132 * 299.99831 * 12 10 8 16 16 C 1.34772 * 119.99760 * 90.00015 * 6 5 4 17 17 O 1.21281 * 119.99940 * 180.02562 * 16 6 5 18 18 C 1.50703 * 120.00069 * 0.02562 * 16 6 5 19 19 N 1.46506 * 109.46877 * 179.97438 * 18 16 6 20 20 C 1.46498 * 120.00239 * 269.72094 * 19 18 16 21 21 C 1.34777 * 119.99873 * 90.00288 * 19 18 16 22 22 O 1.21284 * 119.99754 * 359.97438 * 21 19 18 23 23 C 1.50696 * 120.00137 * 179.97438 * 21 19 18 24 24 C 1.53001 * 117.49887 * 248.61985 * 23 21 19 25 25 C 1.52994 * 59.99933 * 252.50574 * 24 23 21 26 26 H 1.08999 * 109.46617 * 300.00440 * 1 2 3 27 27 H 1.08998 * 109.46351 * 60.00153 * 1 2 3 28 28 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47353 * 239.99532 * 2 1 3 30 30 H 1.09000 * 109.47444 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47136 * 299.99744 * 3 2 1 32 32 H 1.09005 * 109.47385 * 59.99903 * 3 2 1 33 33 H 1.09001 * 109.47009 * 55.00028 * 4 2 1 34 34 H 1.08996 * 109.47044 * 295.00197 * 4 2 1 35 35 H 1.09001 * 109.46863 * 60.00131 * 5 4 2 36 36 H 1.09004 * 109.47053 * 300.00372 * 5 4 2 37 37 H 1.09004 * 109.46974 * 29.99659 * 7 6 5 38 38 H 1.08998 * 109.47423 * 149.99953 * 7 6 5 39 39 H 0.96999 * 120.00110 * 180.02562 * 11 10 8 40 40 H 1.09000 * 109.46978 * 60.00374 * 18 16 6 41 41 H 1.09000 * 109.46976 * 299.99619 * 18 16 6 42 42 H 1.08998 * 109.46661 * 89.99886 * 20 19 18 43 43 H 1.08993 * 109.47575 * 210.00600 * 20 19 18 44 44 H 1.09001 * 109.46870 * 330.00556 * 20 19 18 45 45 H 1.09004 * 115.54642 * 34.32831 * 23 21 19 46 46 H 1.09001 * 117.49733 * 0.02562 * 24 23 21 47 47 H 1.08997 * 117.49999 * 145.01700 * 24 23 21 48 48 H 1.09004 * 117.50553 * 252.50777 * 25 24 23 49 49 H 1.09012 * 117.51513 * 107.47863 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8311 1.1882 6 7 4.0530 -1.5222 2.3841 7 6 4.4014 -0.7549 3.5825 8 6 5.8553 -0.3631 3.5230 9 1 6.4594 -0.6559 2.6769 10 6 6.4145 0.3692 4.5488 11 7 5.6788 0.7262 5.5788 12 14 8.2165 0.8555 4.4748 13 1 8.4556 1.6876 3.2682 14 1 8.5697 1.6331 5.6896 15 1 9.0568 -0.3671 4.4074 16 6 4.1816 -2.8637 2.3818 17 8 4.5854 -3.4359 3.3720 18 6 3.8238 -3.6529 1.1488 19 7 4.0500 -5.0786 1.3988 20 6 5.3528 -5.6773 1.0983 21 6 3.0577 -5.8406 1.9000 22 8 1.9776 -5.3459 2.1444 23 6 3.2901 -7.3073 2.1566 24 6 2.5469 -8.3065 1.2678 25 6 2.1245 -8.1183 2.7262 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.9994 0.1675 1.1422 36 1 3.8531 -1.3941 0.3004 37 1 3.7849 0.1427 3.6312 38 1 4.2255 -1.3651 4.4684 39 1 6.0721 1.2417 6.3003 40 1 4.4465 -3.3272 0.3156 41 1 2.7744 -3.4886 0.9042 42 1 5.9955 -5.6081 1.9760 43 1 5.2179 -6.7247 0.8285 44 1 5.8145 -5.1445 0.2670 45 1 4.2956 -7.5739 2.4826 46 1 1.8901 -7.9030 0.4972 47 1 3.0632 -9.2307 1.0087 48 1 2.3630 -8.9187 3.4267 49 1 1.1895 -7.5908 2.9157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609147416.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:16 Heat of formation + Delta-G solvation = -78.079821 kcal Electronic energy + Delta-G solvation = -26916.314981 eV Core-core repulsion = 23264.186739 eV Total energy + Delta-G solvation = -3652.128243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50916 -40.36937 -38.05860 -37.18950 -36.50910 -36.01060 -34.69483 -31.13888 -30.10949 -28.53626 -27.95473 -27.54064 -25.41474 -24.64125 -23.81230 -23.30271 -20.86831 -20.44876 -19.77354 -18.66861 -18.51589 -18.19245 -17.56524 -16.83756 -16.44781 -16.33863 -15.84596 -15.76142 -15.52634 -14.96301 -14.77100 -14.69883 -14.35618 -14.16436 -13.84766 -13.69409 -13.54379 -13.38803 -13.28204 -13.14056 -12.95382 -12.82581 -12.68807 -12.59373 -12.42115 -12.27722 -12.16383 -11.86693 -11.60508 -11.56011 -11.52684 -11.43661 -11.40020 -10.96951 -10.90666 -10.65717 -9.69814 -9.44777 -8.23010 -6.38881 1.35292 1.36975 1.40344 1.47797 1.76903 1.88228 2.31871 2.47906 2.91160 3.06303 3.50318 3.62030 3.81562 3.88022 3.98490 3.99495 4.08190 4.13462 4.23678 4.27750 4.32987 4.34525 4.52297 4.65756 4.70365 4.73663 4.82000 4.83028 4.87810 4.93227 4.94800 4.96527 5.02668 5.07379 5.14494 5.14621 5.20938 5.22922 5.33390 5.36393 5.50400 5.54075 5.57661 5.82719 6.03974 6.29537 6.66977 6.74783 7.08880 7.26220 7.43865 8.84410 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009344 B = 0.004678 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.844887 B = 5983.927138 C = 8205.150842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.127 4.127 5 C 0.107 3.893 6 N -0.600 5.600 7 C 0.266 3.734 8 C -0.540 4.540 9 H 0.059 0.941 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.971 3.029 13 H -0.257 1.257 14 H -0.281 1.281 15 H -0.276 1.276 16 C 0.480 3.520 17 O -0.592 6.592 18 C 0.106 3.894 19 N -0.598 5.598 20 C 0.075 3.925 21 C 0.535 3.465 22 O -0.589 6.589 23 C -0.207 4.207 24 C -0.120 4.120 25 C -0.160 4.160 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.017 0.983 38 H -0.014 1.014 39 H 0.267 0.733 40 H 0.144 0.856 41 H 0.111 0.889 42 H 0.040 0.960 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.142 0.858 46 H 0.094 0.906 47 H 0.140 0.860 48 H 0.125 0.875 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 -12.174 -18.398 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.208 4.208 4 C -0.166 4.166 5 C -0.015 4.015 6 N -0.331 5.331 7 C 0.145 3.855 8 C -0.578 4.578 9 H 0.077 0.923 10 C -0.193 4.193 11 N -0.571 5.571 12 Si 0.795 3.205 13 H -0.181 1.181 14 H -0.206 1.206 15 H -0.201 1.201 16 C 0.268 3.732 17 O -0.473 6.473 18 C -0.021 4.021 19 N -0.328 5.328 20 C -0.066 4.066 21 C 0.326 3.674 22 O -0.470 6.470 23 C -0.227 4.227 24 C -0.157 4.157 25 C -0.198 4.198 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.035 0.965 38 H 0.004 0.996 39 H 0.075 0.925 40 H 0.162 0.838 41 H 0.129 0.871 42 H 0.059 0.941 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.160 0.840 46 H 0.113 0.887 47 H 0.158 0.842 48 H 0.143 0.857 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.190 -12.089 -17.605 21.978 hybrid contribution 0.783 0.887 1.230 1.707 sum -4.407 -11.202 -16.375 20.324 Atomic orbital electron populations 1.21824 0.94734 1.01754 1.01943 1.21037 0.96097 0.96237 0.97012 1.21913 1.01275 0.95832 1.01758 1.22045 0.95165 1.00469 0.98922 1.21862 0.94136 0.98860 0.86630 1.48254 1.63179 1.06023 1.15659 1.18643 0.94987 0.89285 0.82632 1.21647 0.96041 1.34076 1.06047 0.92326 1.25932 1.03238 0.95678 0.94496 1.70073 1.38434 1.38834 1.09794 0.85416 0.78585 0.78294 0.78203 1.18112 1.20581 1.20094 1.21857 0.77657 0.82848 0.90885 1.90619 1.48494 1.70510 1.37660 1.21484 1.05062 0.80651 0.94885 1.47510 1.14361 1.07468 1.63499 1.22098 0.82191 1.00866 1.01464 1.20447 0.82981 0.89147 0.74835 1.90642 1.27393 1.75692 1.53259 1.22238 1.00993 0.88248 1.11253 1.23059 1.00713 0.98884 0.93036 1.23025 0.96989 1.01360 0.98399 0.93871 0.90947 0.92802 0.88889 0.92573 0.90976 0.94158 0.92535 0.94214 0.90239 0.87817 0.96518 0.99568 0.92468 0.83822 0.87088 0.94128 0.87355 0.88522 0.84022 0.88740 0.84208 0.85689 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.19 71.98 0.66 -2.23 16 2 C -0.08 -1.82 2.92 -10.79 -0.03 -1.85 16 3 C -0.15 -3.27 8.95 71.98 0.64 -2.63 16 4 C -0.13 -3.75 5.01 30.59 0.15 -3.59 16 5 C 0.11 3.45 4.97 86.38 0.43 3.88 16 6 N -0.60 -26.83 2.46 -826.18 -2.03 -28.85 16 7 C 0.27 15.13 5.16 85.63 0.44 15.57 16 8 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 9 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 10 C 0.01 0.31 5.46 84.66 0.46 0.77 16 11 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 12 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 13 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 C 0.48 21.36 7.74 87.66 0.68 22.03 16 17 O -0.59 -32.83 16.01 -3.03 -0.05 -32.88 16 18 C 0.11 3.26 4.48 85.63 0.38 3.64 16 19 N -0.60 -17.54 2.36 -851.13 -2.01 -19.55 16 20 C 0.08 1.53 10.05 127.77 1.28 2.82 16 21 C 0.54 17.34 7.46 87.66 0.65 17.99 16 22 O -0.59 -24.15 15.84 -3.04 -0.05 -24.20 16 23 C -0.21 -4.64 4.79 -11.54 -0.06 -4.70 16 24 C -0.12 -1.81 10.23 30.59 0.31 -1.50 16 25 C -0.16 -3.29 10.04 30.59 0.31 -2.98 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.27 6.56 -2.39 -0.02 1.26 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 1.72 7.22 -2.39 -0.02 1.70 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 2.67 6.50 -2.39 -0.02 2.66 16 36 H 0.10 2.46 6.44 -2.39 -0.02 2.44 16 37 H 0.02 0.98 8.07 -2.38 -0.02 0.96 16 38 H -0.01 -0.93 7.42 -2.39 -0.02 -0.94 16 39 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.14 3.11 7.15 -2.39 -0.02 3.09 16 41 H 0.11 3.36 6.47 -2.39 -0.02 3.35 16 42 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.11 1.43 6.64 -2.39 -0.02 1.41 16 44 H 0.10 1.46 7.89 -2.39 -0.02 1.44 16 45 H 0.14 2.65 7.27 -2.39 -0.02 2.63 16 46 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 49 H 0.08 2.10 7.67 -2.38 -0.02 2.08 16 Total: -1.00 -86.24 397.63 5.65 -80.59 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.91 Total: 19.64 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 6.57 Total: 15.81 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.75 Total: -106.17 kcal Atomic # 8 Polarization: -56.98 SS G_CDS: -0.10 Total: -57.07 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -86.24 5.65 -80.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609147416.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.508 kcal (2) G-P(sol) polarization free energy of solvation -86.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds