Wall clock time and date at job start Fri Apr 10 2020 22:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47143 * 2 1 4 4 C 1.53001 * 109.47195 * 239.99685 * 2 1 3 5 5 C 1.53004 * 109.46905 * 119.99790 * 2 1 3 6 6 N 1.46496 * 109.47200 * 54.26602 * 5 2 1 7 7 C 1.46501 * 119.99986 * 275.81009 * 6 5 2 8 8 C 1.50700 * 109.47241 * 270.00304 * 7 6 5 9 9 H 1.08004 * 120.00174 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00444 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00342 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99687 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46855 * 90.00039 * 12 10 8 14 14 H 1.48500 * 109.47336 * 210.00248 * 12 10 8 15 15 H 1.48501 * 109.47243 * 330.00719 * 12 10 8 16 16 C 1.34769 * 120.00503 * 95.81035 * 6 5 2 17 17 O 1.21287 * 120.00595 * 185.44245 * 16 6 5 18 18 C 1.50703 * 119.99907 * 5.44020 * 16 6 5 19 19 C 1.52998 * 109.47240 * 174.41955 * 18 16 6 20 20 N 1.46503 * 109.47011 * 180.02562 * 19 18 16 21 21 C 1.46761 * 124.35306 * 89.99971 * 20 19 18 22 22 C 1.54480 * 105.55268 * 197.07541 * 21 20 19 23 23 C 1.54625 * 101.76402 * 334.54619 * 22 21 20 24 24 C 1.34623 * 124.46631 * 270.02792 * 20 19 18 25 25 O 1.21286 * 124.91248 * 359.55379 * 24 20 19 26 26 H 1.09000 * 109.46962 * 300.00123 * 1 2 3 27 27 H 1.08993 * 109.46944 * 60.00307 * 1 2 3 28 28 H 1.09006 * 109.47001 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47398 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47270 * 299.99896 * 3 2 1 31 31 H 1.09005 * 109.47327 * 59.99351 * 3 2 1 32 32 H 1.08994 * 109.46995 * 304.12672 * 4 2 1 33 33 H 1.08992 * 109.46841 * 64.13102 * 4 2 1 34 34 H 1.08997 * 109.46932 * 184.12825 * 4 2 1 35 35 H 1.09004 * 109.47259 * 294.26494 * 5 2 1 36 36 H 1.09000 * 109.47170 * 174.26348 * 5 2 1 37 37 H 1.09006 * 109.47289 * 29.99603 * 7 6 5 38 38 H 1.09002 * 109.47596 * 149.99953 * 7 6 5 39 39 H 0.96995 * 119.99846 * 179.97438 * 11 10 8 40 40 H 1.09010 * 109.46748 * 54.42057 * 18 16 6 41 41 H 1.08997 * 109.47399 * 294.42798 * 18 16 6 42 42 H 1.09002 * 109.46882 * 60.00946 * 19 18 16 43 43 H 1.08995 * 109.47709 * 300.00169 * 19 18 16 44 44 H 1.09008 * 110.24175 * 78.03467 * 21 20 19 45 45 H 1.09002 * 110.24323 * 316.12856 * 21 20 19 46 46 H 1.09000 * 110.96091 * 92.66308 * 22 21 20 47 47 H 1.08998 * 110.96968 * 216.42218 * 22 21 20 48 48 H 1.09005 * 110.48836 * 143.47401 * 23 22 21 49 49 H 1.09006 * 110.48319 * 266.11519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.4423 -2.0568 1.3204 7 6 0.1134 -2.2341 1.9112 8 6 0.2513 -2.4926 3.3894 9 1 1.2308 -2.5224 3.8434 10 6 -0.8729 -2.6923 4.1622 11 7 -0.7526 -2.9184 5.4522 12 14 -2.5671 -2.6416 3.3770 13 1 -2.9422 -4.0042 2.9208 14 1 -3.5598 -2.1619 4.3719 15 1 -2.5462 -1.7186 2.2138 16 6 2.1147 -3.1224 0.8423 17 8 1.5818 -4.2115 0.8104 18 6 3.5288 -2.9609 0.3471 19 6 4.1050 -4.3332 -0.0074 20 7 5.4800 -4.1761 -0.4881 21 6 6.6674 -4.2080 0.3738 22 6 7.8035 -3.5788 -0.4628 23 6 7.3208 -3.8523 -1.9061 24 6 5.8193 -3.9834 -1.7766 25 8 5.0346 -3.9232 -2.6994 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6176 -1.7254 -1.2869 33 1 1.7384 -0.1666 -2.1376 34 1 3.1275 -0.7858 -1.2129 35 1 1.7629 -0.1515 2.1363 36 1 3.1252 -0.8111 1.1995 37 1 -0.4776 -1.3318 1.7538 38 1 -0.3841 -3.0813 1.4390 39 1 -1.5435 -3.0585 5.9958 40 1 4.1367 -2.5020 1.1271 41 1 3.5335 -2.3251 -0.5382 42 1 3.4973 -4.7919 -0.7873 43 1 4.1005 -4.9689 0.8779 44 1 6.9164 -5.2366 0.6349 45 1 6.4942 -3.6217 1.2763 46 1 7.8803 -2.5081 -0.2734 47 1 8.7532 -4.0770 -0.2680 48 1 7.5760 -3.0171 -2.5584 49 1 7.7535 -4.7787 -2.2839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609191685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:22 Heat of formation + Delta-G solvation = -75.953050 kcal Electronic energy + Delta-G solvation = -27488.960899 eV Core-core repulsion = 23836.924880 eV Total energy + Delta-G solvation = -3652.036019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49359 -39.57013 -37.16494 -36.46955 -34.15556 -33.59813 -32.36430 -30.33938 -28.29030 -27.72585 -27.19395 -26.95293 -25.65383 -24.24459 -22.14476 -21.81830 -19.39580 -19.33377 -17.97715 -17.07851 -17.03763 -16.70690 -15.83850 -15.73029 -15.41103 -15.16164 -14.31121 -14.04856 -14.02688 -13.88425 -13.81174 -13.44881 -13.41795 -12.88670 -12.80082 -12.59099 -12.47965 -12.32397 -12.06674 -11.78701 -11.73396 -11.55689 -11.45881 -11.43705 -11.27435 -11.07876 -10.85632 -10.74999 -10.54888 -10.46299 -10.26467 -10.03288 -9.85811 -9.51061 -9.11214 -8.73447 -8.57800 -7.65812 -6.09194 -4.07168 2.49537 2.88443 3.29079 3.33834 3.35116 3.37659 3.89052 4.16458 4.23488 4.39669 4.54837 4.80556 4.95079 4.96228 4.98847 5.07260 5.13542 5.22628 5.26690 5.29340 5.34897 5.42776 5.51605 5.54348 5.65463 5.67424 5.69799 5.71575 5.82730 5.90563 5.97171 6.06164 6.07250 6.11903 6.17093 6.27214 6.35523 6.47105 6.52580 6.60954 6.77784 6.98087 7.06482 7.37235 7.62970 8.09407 8.26579 8.47241 8.91860 8.98419 9.51887 11.04232 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.004134 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.549141 B = 6771.813616 C = 7746.714240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.141 4.141 5 C 0.120 3.880 6 N -0.586 5.586 7 C 0.208 3.792 8 C -0.528 4.528 9 H 0.073 0.927 10 C 0.073 3.927 11 N -0.899 5.899 12 Si 0.873 3.127 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.516 3.484 17 O -0.545 6.545 18 C -0.167 4.167 19 C 0.142 3.858 20 N -0.619 5.619 21 C 0.098 3.902 22 C -0.132 4.132 23 C -0.155 4.155 24 C 0.512 3.488 25 O -0.531 6.531 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.570 4.939 -11.879 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C -0.194 4.194 4 C -0.198 4.198 5 C -0.004 4.004 6 N -0.317 5.317 7 C 0.088 3.912 8 C -0.566 4.566 9 H 0.091 0.909 10 C -0.129 4.129 11 N -0.537 5.537 12 Si 0.700 3.300 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.189 1.189 16 C 0.302 3.698 17 O -0.423 6.423 18 C -0.208 4.208 19 C 0.020 3.980 20 N -0.353 5.353 21 C -0.025 4.025 22 C -0.169 4.169 23 C -0.196 4.196 24 C 0.300 3.700 25 O -0.408 6.408 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.118 0.882 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.659 4.338 -12.166 20.299 hybrid contribution -0.877 0.094 0.008 0.882 sum 14.782 4.432 -12.159 19.647 Atomic orbital electron populations 1.22062 0.94221 1.02849 1.01086 1.21012 0.96715 0.95306 0.95849 1.21796 1.00613 0.95185 1.01839 1.22001 1.00219 1.00730 0.96896 1.21572 0.97092 0.84262 0.97468 1.47798 1.19789 1.05731 1.58351 1.19872 0.79655 0.97544 0.94166 1.21352 0.95222 1.49203 0.90857 0.90878 1.24833 0.98932 0.94476 0.94679 1.69891 1.29769 1.48863 1.05194 0.86893 0.84493 0.79179 0.79428 1.19928 1.21108 1.18948 1.20094 0.87243 0.84496 0.77936 1.90670 1.69770 1.25717 1.56189 1.22298 0.95306 0.99938 1.03251 1.21133 0.79477 0.96080 1.01301 1.48440 1.07003 1.71821 1.08009 1.22122 0.84486 1.01583 0.94341 1.22598 0.98398 1.02270 0.93681 1.22333 0.93593 1.04859 0.98767 1.21007 0.91071 0.75493 0.82465 1.90741 1.57363 1.50697 1.41963 0.92252 0.93475 0.91418 0.92839 0.92726 0.92357 0.92427 0.92865 0.92784 0.89919 0.91259 0.94121 0.94692 0.92606 0.89409 0.88229 0.89096 0.89459 0.90910 0.90085 0.89929 0.89199 0.88175 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 6.98 37.16 0.26 -1.94 16 2 C -0.09 -1.20 0.85 -154.51 -0.13 -1.33 16 3 C -0.14 -1.50 8.47 37.15 0.31 -1.18 16 4 C -0.14 -1.90 6.84 37.16 0.25 -1.65 16 5 C 0.12 1.89 4.58 -4.04 -0.02 1.88 16 6 N -0.59 -11.77 2.00 -175.05 -0.35 -12.12 16 7 C 0.21 5.00 3.00 -5.19 -0.02 4.98 16 8 C -0.53 -14.94 9.94 -34.44 -0.34 -15.28 16 9 H 0.07 2.26 8.06 -52.48 -0.42 1.83 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 11 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 12 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 13 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 15 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 16 C 0.52 10.35 6.40 -10.99 -0.07 10.28 16 17 O -0.55 -13.19 15.54 5.55 0.09 -13.11 16 18 C -0.17 -2.50 4.38 -27.88 -0.12 -2.62 16 19 C 0.14 2.06 5.25 -4.04 -0.02 2.04 16 20 N -0.62 -7.24 2.94 -172.35 -0.51 -7.75 16 21 C 0.10 0.76 7.34 -3.12 -0.02 0.73 16 22 C -0.13 -0.73 7.18 -25.10 -0.18 -0.91 16 23 C -0.16 -1.18 6.86 -26.74 -0.18 -1.36 16 24 C 0.51 6.48 8.03 -10.77 -0.09 6.40 16 25 O -0.53 -9.10 17.60 5.55 0.10 -9.01 16 26 H 0.06 0.92 7.72 -51.93 -0.40 0.52 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.20 5.76 -51.93 -0.30 0.90 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.91 6.74 -51.93 -0.35 0.56 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.67 6.49 -51.93 -0.34 0.33 16 35 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 36 H 0.07 0.93 6.11 -51.93 -0.32 0.61 16 37 H 0.04 0.93 4.38 -51.93 -0.23 0.70 16 38 H 0.04 0.92 6.78 -51.93 -0.35 0.57 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.09 1.16 7.34 -51.92 -0.38 0.78 16 41 H 0.10 1.44 4.67 -51.93 -0.24 1.19 16 42 H 0.09 1.53 7.83 -51.93 -0.41 1.12 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -35.45 377.84 -7.74 -43.19 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.40 Total: 0.87 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.46 Total: 2.05 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.08 Total: -46.61 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.18 Total: -22.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.45 -7.74 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609191685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.765 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds