Wall clock time and date at job start Fri Apr 10 2020 22:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47143 * 2 1 4 4 C 1.53001 * 109.47195 * 239.99685 * 2 1 3 5 5 C 1.53004 * 109.46905 * 119.99790 * 2 1 3 6 6 N 1.46496 * 109.47200 * 54.26602 * 5 2 1 7 7 C 1.46501 * 119.99986 * 275.81009 * 6 5 2 8 8 C 1.50700 * 109.47241 * 270.00304 * 7 6 5 9 9 H 1.08004 * 120.00174 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00444 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00342 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99687 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46855 * 90.00039 * 12 10 8 14 14 H 1.48500 * 109.47336 * 210.00248 * 12 10 8 15 15 H 1.48501 * 109.47243 * 330.00719 * 12 10 8 16 16 C 1.34769 * 120.00503 * 95.81035 * 6 5 2 17 17 O 1.21287 * 120.00595 * 185.44245 * 16 6 5 18 18 C 1.50703 * 119.99907 * 5.44020 * 16 6 5 19 19 C 1.52998 * 109.47240 * 174.41955 * 18 16 6 20 20 N 1.46503 * 109.47011 * 180.02562 * 19 18 16 21 21 C 1.46761 * 124.35306 * 89.99971 * 20 19 18 22 22 C 1.54480 * 105.55268 * 197.07541 * 21 20 19 23 23 C 1.54625 * 101.76402 * 334.54619 * 22 21 20 24 24 C 1.34623 * 124.46631 * 270.02792 * 20 19 18 25 25 O 1.21286 * 124.91248 * 359.55379 * 24 20 19 26 26 H 1.09000 * 109.46962 * 300.00123 * 1 2 3 27 27 H 1.08993 * 109.46944 * 60.00307 * 1 2 3 28 28 H 1.09006 * 109.47001 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47398 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47270 * 299.99896 * 3 2 1 31 31 H 1.09005 * 109.47327 * 59.99351 * 3 2 1 32 32 H 1.08994 * 109.46995 * 304.12672 * 4 2 1 33 33 H 1.08992 * 109.46841 * 64.13102 * 4 2 1 34 34 H 1.08997 * 109.46932 * 184.12825 * 4 2 1 35 35 H 1.09004 * 109.47259 * 294.26494 * 5 2 1 36 36 H 1.09000 * 109.47170 * 174.26348 * 5 2 1 37 37 H 1.09006 * 109.47289 * 29.99603 * 7 6 5 38 38 H 1.09002 * 109.47596 * 149.99953 * 7 6 5 39 39 H 0.96995 * 119.99846 * 179.97438 * 11 10 8 40 40 H 1.09010 * 109.46748 * 54.42057 * 18 16 6 41 41 H 1.08997 * 109.47399 * 294.42798 * 18 16 6 42 42 H 1.09002 * 109.46882 * 60.00946 * 19 18 16 43 43 H 1.08995 * 109.47709 * 300.00169 * 19 18 16 44 44 H 1.09008 * 110.24175 * 78.03467 * 21 20 19 45 45 H 1.09002 * 110.24323 * 316.12856 * 21 20 19 46 46 H 1.09000 * 110.96091 * 92.66308 * 22 21 20 47 47 H 1.08998 * 110.96968 * 216.42218 * 22 21 20 48 48 H 1.09005 * 110.48836 * 143.47401 * 23 22 21 49 49 H 1.09006 * 110.48319 * 266.11519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.4423 -2.0568 1.3204 7 6 0.1134 -2.2341 1.9112 8 6 0.2513 -2.4926 3.3894 9 1 1.2308 -2.5224 3.8434 10 6 -0.8729 -2.6923 4.1622 11 7 -0.7526 -2.9184 5.4522 12 14 -2.5671 -2.6416 3.3770 13 1 -2.9422 -4.0042 2.9208 14 1 -3.5598 -2.1619 4.3719 15 1 -2.5462 -1.7186 2.2138 16 6 2.1147 -3.1224 0.8423 17 8 1.5818 -4.2115 0.8104 18 6 3.5288 -2.9609 0.3471 19 6 4.1050 -4.3332 -0.0074 20 7 5.4800 -4.1761 -0.4881 21 6 6.6674 -4.2080 0.3738 22 6 7.8035 -3.5788 -0.4628 23 6 7.3208 -3.8523 -1.9061 24 6 5.8193 -3.9834 -1.7766 25 8 5.0346 -3.9232 -2.6994 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6176 -1.7254 -1.2869 33 1 1.7384 -0.1666 -2.1376 34 1 3.1275 -0.7858 -1.2129 35 1 1.7629 -0.1515 2.1363 36 1 3.1252 -0.8111 1.1995 37 1 -0.4776 -1.3318 1.7538 38 1 -0.3841 -3.0813 1.4390 39 1 -1.5435 -3.0585 5.9958 40 1 4.1367 -2.5020 1.1271 41 1 3.5335 -2.3251 -0.5382 42 1 3.4973 -4.7919 -0.7873 43 1 4.1005 -4.9689 0.8779 44 1 6.9164 -5.2366 0.6349 45 1 6.4942 -3.6217 1.2763 46 1 7.8803 -2.5081 -0.2734 47 1 8.7532 -4.0770 -0.2680 48 1 7.5760 -3.0171 -2.5584 49 1 7.7535 -4.7787 -2.2839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609191685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:21 Heat of formation + Delta-G solvation = -99.280382 kcal Electronic energy + Delta-G solvation = -27489.972448 eV Core-core repulsion = 23836.924880 eV Total energy + Delta-G solvation = -3653.047568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54403 -40.94609 -38.54603 -37.46752 -35.76722 -34.74712 -34.37474 -31.62352 -29.92388 -28.42052 -28.25169 -28.14695 -27.02691 -25.65848 -23.68024 -22.67237 -20.70593 -20.35965 -19.34981 -19.16892 -18.29891 -17.57582 -17.18051 -17.03460 -16.89425 -16.38737 -15.92900 -15.29255 -15.19623 -15.10233 -14.71216 -14.69964 -14.52695 -14.33639 -14.09774 -13.92875 -13.71970 -13.53922 -13.25487 -13.10688 -12.99248 -12.76106 -12.71940 -12.56899 -12.50384 -12.27027 -12.07232 -12.02217 -11.86990 -11.78828 -11.74525 -11.58629 -11.45048 -10.87610 -10.82105 -10.70661 -9.75491 -9.36131 -8.35195 -6.38471 1.29285 1.33247 1.41071 1.53844 1.73657 1.90361 2.28569 2.40842 2.99565 3.45495 3.65081 3.68747 3.80619 3.84531 3.89949 3.95203 4.08064 4.11015 4.28471 4.34982 4.47818 4.54617 4.60027 4.69104 4.72311 4.74287 4.76470 4.84759 4.87691 4.89497 4.90908 4.92680 4.96466 5.06336 5.08586 5.14706 5.16415 5.27413 5.32895 5.40479 5.44096 5.51938 5.53023 5.66063 6.17627 6.23813 6.62001 6.67624 7.13353 7.20739 7.38087 8.81476 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.004134 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.549141 B = 6771.813616 C = 7746.714240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.136 4.136 5 C 0.113 3.887 6 N -0.590 5.590 7 C 0.221 3.779 8 C -0.533 4.533 9 H 0.034 0.966 10 C 0.017 3.983 11 N -0.942 5.942 12 Si 0.937 3.063 13 H -0.279 1.279 14 H -0.273 1.273 15 H -0.241 1.241 16 C 0.506 3.494 17 O -0.597 6.597 18 C -0.147 4.147 19 C 0.147 3.853 20 N -0.618 5.618 21 C 0.087 3.913 22 C -0.116 4.116 23 C -0.145 4.145 24 C 0.498 3.502 25 O -0.588 6.588 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.010 0.990 39 H 0.268 0.732 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.738 7.067 -13.107 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C -0.188 4.188 4 C -0.193 4.193 5 C -0.009 4.009 6 N -0.319 5.319 7 C 0.099 3.901 8 C -0.571 4.571 9 H 0.052 0.948 10 C -0.182 4.182 11 N -0.583 5.583 12 Si 0.760 3.240 13 H -0.205 1.205 14 H -0.198 1.198 15 H -0.164 1.164 16 C 0.295 3.705 17 O -0.479 6.479 18 C -0.188 4.188 19 C 0.024 3.976 20 N -0.351 5.351 21 C -0.034 4.034 22 C -0.153 4.153 23 C -0.185 4.185 24 C 0.288 3.712 25 O -0.468 6.468 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.138 0.862 48 H 0.131 0.869 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.892 6.513 -13.381 23.273 hybrid contribution -1.483 -0.614 0.438 1.664 sum 16.409 5.899 -12.944 21.716 Atomic orbital electron populations 1.22053 0.95516 1.00953 1.01889 1.20978 0.95662 0.97051 0.94590 1.21749 1.01774 0.92643 1.02608 1.21949 1.00855 0.99090 0.97426 1.21897 0.98628 0.81978 0.98402 1.47847 1.18634 1.07765 1.57642 1.19502 0.82140 0.97090 0.91337 1.21584 0.93618 1.48884 0.93060 0.94810 1.25715 1.03314 0.94035 0.95102 1.70026 1.31194 1.50238 1.06797 0.85875 0.79277 0.79371 0.79475 1.20485 1.19785 1.16395 1.20985 0.88905 0.83585 0.77010 1.90635 1.71210 1.27734 1.58298 1.22185 0.91913 1.00611 1.04078 1.20816 0.81254 0.95537 1.00007 1.48555 1.06732 1.71058 1.08771 1.22474 0.83561 1.02920 0.94443 1.22645 0.98417 1.03198 0.91079 1.22373 0.89187 1.06225 1.00724 1.22022 0.93168 0.74211 0.81816 1.90704 1.59346 1.53171 1.43590 0.92753 0.91365 0.94573 0.91002 0.91340 0.92258 0.95555 0.91293 0.91422 0.90837 0.88425 0.92395 0.97215 0.92302 0.86778 0.87142 0.92345 0.89924 0.89813 0.89219 0.88766 0.86168 0.86924 0.86347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 6.98 71.98 0.50 -3.77 16 2 C -0.08 -2.07 0.85 -52.18 -0.04 -2.11 16 3 C -0.13 -2.39 8.47 71.98 0.61 -1.78 16 4 C -0.14 -3.41 6.84 71.98 0.49 -2.92 16 5 C 0.11 3.44 4.58 86.38 0.40 3.84 16 6 N -0.59 -24.11 2.00 -826.14 -1.65 -25.76 16 7 C 0.22 10.93 3.00 85.63 0.26 11.19 16 8 C -0.53 -31.27 9.94 25.60 0.25 -31.02 16 9 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 10 C 0.02 0.98 5.47 84.66 0.46 1.45 16 11 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 12 Si 0.94 45.13 27.47 68.60 1.88 47.01 16 13 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 16 C 0.51 20.98 6.40 87.66 0.56 21.54 16 17 O -0.60 -30.58 15.54 -3.05 -0.05 -30.63 16 18 C -0.15 -4.37 4.38 29.85 0.13 -4.24 16 19 C 0.15 4.38 5.25 86.38 0.45 4.84 16 20 N -0.62 -13.84 2.94 -817.67 -2.40 -16.24 16 21 C 0.09 1.11 7.34 86.83 0.64 1.74 16 22 C -0.12 -0.78 7.18 31.65 0.23 -0.55 16 23 C -0.15 -1.76 6.86 30.59 0.21 -1.55 16 24 C 0.50 12.13 8.03 87.87 0.71 12.83 16 25 O -0.59 -20.48 17.60 -3.05 -0.05 -20.53 16 26 H 0.05 1.61 7.72 -2.39 -0.02 1.59 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.26 5.76 -2.38 -0.01 1.25 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.03 0.81 6.74 -2.39 -0.02 0.80 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.49 6.49 -2.39 -0.02 1.48 16 35 H 0.07 2.38 8.11 -2.38 -0.02 2.36 16 36 H 0.10 2.38 6.11 -2.39 -0.01 2.36 16 37 H 0.06 2.66 4.38 -2.38 -0.01 2.65 16 38 H 0.01 0.53 6.78 -2.39 -0.02 0.52 16 39 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.11 2.78 7.34 -2.38 -0.02 2.76 16 41 H 0.11 3.08 4.67 -2.39 -0.01 3.06 16 42 H 0.06 2.11 7.83 -2.39 -0.02 2.09 16 43 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -83.50 377.84 4.75 -78.75 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.87 Total: 16.95 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.86 Total: 9.50 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -3.75 Total: -101.05 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.10 Total: -51.16 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -83.50 4.75 -78.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609191685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.527 kcal (2) G-P(sol) polarization free energy of solvation -83.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds