Wall clock time and date at job start Fri Apr 10 2020 22:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00503 * 2 1 4 4 C 1.50701 * 109.46676 * 269.72484 * 3 2 1 5 5 O 1.21280 * 120.00383 * 354.43842 * 4 3 2 6 6 N 1.34774 * 119.99443 * 174.43695 * 4 3 2 7 7 C 1.46505 * 119.99610 * 185.44152 * 6 4 3 8 8 C 1.50706 * 109.47070 * 90.00675 * 7 6 4 9 9 H 1.07999 * 119.99562 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00079 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00369 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00037 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46946 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47140 * 120.00056 * 12 10 8 15 15 H 1.48493 * 109.47515 * 240.00305 * 12 10 8 16 16 C 1.46504 * 120.00368 * 5.44835 * 6 4 3 17 17 C 1.52999 * 109.46976 * 95.81399 * 16 6 4 18 18 C 1.52994 * 109.47432 * 54.28681 * 17 16 6 19 19 C 1.53007 * 109.46469 * 174.28458 * 17 16 6 20 20 C 1.52999 * 109.47036 * 294.27890 * 17 16 6 21 21 C 1.34781 * 119.99643 * 179.72317 * 2 1 3 22 22 O 1.21280 * 120.00055 * 180.27640 * 21 2 1 23 23 C 1.50703 * 120.00098 * 0.27144 * 21 2 1 24 24 C 1.52994 * 117.50342 * 248.62414 * 23 21 2 25 25 C 1.52997 * 117.49948 * 179.97438 * 23 21 2 26 26 H 1.08999 * 109.47052 * 90.00195 * 1 2 3 27 27 H 1.09004 * 109.47191 * 210.00382 * 1 2 3 28 28 H 1.08999 * 109.46718 * 330.00129 * 1 2 3 29 29 H 1.08997 * 109.46534 * 29.72354 * 3 2 1 30 30 H 1.08996 * 109.47462 * 149.72085 * 3 2 1 31 31 H 1.09004 * 109.47306 * 209.99774 * 7 6 4 32 32 H 1.08996 * 109.47155 * 330.00240 * 7 6 4 33 33 H 0.96997 * 120.00356 * 179.97438 * 11 10 8 34 34 H 1.09006 * 109.46830 * 215.81317 * 16 6 4 35 35 H 1.09002 * 109.46779 * 335.81207 * 16 6 4 36 36 H 1.08998 * 109.47627 * 59.99362 * 18 17 16 37 37 H 1.08997 * 109.47417 * 179.97438 * 18 17 16 38 38 H 1.09007 * 109.46767 * 299.99813 * 18 17 16 39 39 H 1.08996 * 109.47130 * 60.00120 * 19 17 16 40 40 H 1.09006 * 109.46571 * 180.02562 * 19 17 16 41 41 H 1.08998 * 109.46858 * 299.99577 * 19 17 16 42 42 H 1.08998 * 109.46761 * 64.16832 * 20 17 16 43 43 H 1.09004 * 109.46680 * 184.16040 * 20 17 16 44 44 H 1.08993 * 109.47453 * 304.16544 * 20 17 16 45 45 H 1.08998 * 115.54793 * 34.33595 * 23 21 2 46 46 H 1.09005 * 117.49619 * 0.02562 * 24 23 21 47 47 H 1.08999 * 117.50205 * 145.02055 * 24 23 21 48 48 H 1.08999 * 117.50028 * 214.97957 * 25 23 21 49 49 H 1.09005 * 117.50035 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7002 -1.4208 5 8 2.1549 0.9686 -2.3405 6 7 3.0178 2.8991 -1.6695 7 6 3.1587 3.3701 -3.0496 8 6 1.9295 4.1483 -3.4429 9 1 1.1238 4.2786 -2.7356 10 6 1.8337 4.6938 -4.7054 11 7 2.8150 4.5355 -5.5664 12 14 0.3097 5.6578 -5.1931 13 1 -0.6409 5.6912 -4.0527 14 1 0.6964 7.0450 -5.5554 15 1 -0.3377 5.0040 -6.3587 16 6 3.4890 3.7315 -0.5597 17 6 4.9868 3.5006 -0.3493 18 6 5.7293 3.7375 -1.6659 19 6 5.5081 4.4714 0.7121 20 6 5.2205 2.0621 0.1165 21 6 2.1388 -1.1673 0.0056 22 8 3.3516 -1.1673 0.0107 23 6 1.3853 -2.4724 0.0058 24 6 1.4551 -3.3284 1.2718 25 6 2.2073 -3.7627 0.0117 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6064 2.0295 0.5095 30 1 3.1478 1.1396 0.5181 31 1 4.0356 4.0130 -3.1264 32 1 3.2758 2.5149 -3.7151 33 1 2.7474 4.9190 -6.4548 34 1 3.3124 4.7816 -0.7927 35 1 2.9490 3.4651 0.3489 36 1 5.5627 4.7623 -1.9977 37 1 6.7963 3.5735 -1.5159 38 1 5.3577 3.0459 -2.4221 39 1 4.9792 4.3026 1.6501 40 1 6.5753 4.3073 0.8617 41 1 5.3416 5.4962 0.3803 42 1 4.9171 1.3716 -0.6704 43 1 6.2784 1.9191 0.3372 44 1 4.6329 1.8708 1.0142 45 1 0.4493 -2.4748 -0.5528 46 1 2.0459 -2.9475 2.1050 47 1 0.5649 -3.8941 1.5467 48 1 1.8116 -4.6141 -0.5421 49 1 3.2932 -3.6678 0.0151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609214473.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:24 Heat of formation + Delta-G solvation = -42.325038 kcal Electronic energy + Delta-G solvation = -27736.639432 eV Core-core repulsion = 24086.061633 eV Total energy + Delta-G solvation = -3650.577799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.26204 -39.13771 -37.04922 -36.15681 -35.18198 -33.76924 -32.37884 -29.65540 -27.48275 -26.97849 -26.71517 -26.46062 -25.41921 -23.80241 -22.56360 -22.24036 -19.33296 -19.01061 -18.00421 -17.39088 -16.68645 -16.52806 -16.04650 -15.30218 -15.14093 -14.80358 -14.47475 -14.34591 -14.00631 -13.65969 -13.42681 -13.33289 -12.86928 -12.60731 -12.58558 -12.49570 -12.25716 -12.08853 -11.88990 -11.65637 -11.49258 -11.31297 -11.26854 -11.07636 -10.86940 -10.80421 -10.71348 -10.56196 -10.51969 -10.35157 -10.15178 -10.08881 -9.69347 -9.51824 -9.29160 -8.40602 -8.29602 -7.55652 -6.02456 -4.06955 2.56790 3.01141 3.28824 3.36126 3.38990 3.46783 3.77421 4.06437 4.45374 4.47804 4.69289 4.78708 5.02205 5.04736 5.08479 5.10457 5.14945 5.30753 5.33067 5.39577 5.42418 5.49137 5.56376 5.66432 5.69251 5.78449 5.81046 5.83749 5.85345 6.01427 6.02638 6.07348 6.19111 6.20953 6.35013 6.38340 6.47438 6.50480 6.68393 6.84785 7.16084 7.45708 7.50819 7.60795 7.94617 8.27486 8.29906 8.48376 8.92688 9.14275 9.57743 11.05282 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.004711 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.295086 B = 5942.124828 C = 7435.472970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.594 5.594 3 C 0.083 3.917 4 C 0.494 3.506 5 O -0.535 6.535 6 N -0.592 5.592 7 C 0.238 3.762 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.893 5.893 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.120 3.880 17 C -0.088 4.088 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.140 4.140 21 C 0.550 3.450 22 O -0.538 6.538 23 C -0.189 4.189 24 C -0.155 4.155 25 C -0.148 4.148 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.124 0.876 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 -7.965 16.875 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.326 5.326 3 C -0.043 4.043 4 C 0.279 3.721 5 O -0.411 6.411 6 N -0.324 5.324 7 C 0.119 3.881 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.005 4.005 17 C -0.089 4.089 18 C -0.199 4.199 19 C -0.194 4.194 20 C -0.198 4.198 21 C 0.338 3.662 22 O -0.415 6.415 23 C -0.210 4.210 24 C -0.192 4.192 25 C -0.185 4.185 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.142 0.858 46 H 0.116 0.884 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.835 -8.287 16.174 18.192 hybrid contribution -1.049 0.833 -0.520 1.437 sum -1.884 -7.454 15.653 17.440 Atomic orbital electron populations 1.21841 0.79114 1.02720 1.02631 1.47258 1.07036 1.05049 1.73262 1.21804 0.99859 0.85778 0.96871 1.20658 0.78684 0.81977 0.90739 1.90655 1.51762 1.52620 1.46106 1.48141 1.58259 1.16794 1.09202 1.19499 0.97341 0.95524 0.75688 1.21495 1.03418 1.33034 0.98465 0.92616 1.24918 0.96438 0.96488 0.96234 1.69940 1.31783 1.45329 1.06199 0.86486 0.83113 0.79520 0.78528 1.19894 1.20996 1.20968 1.21556 0.92576 0.96846 0.89489 1.21024 0.96164 0.95552 0.96201 1.22032 0.98550 1.02634 0.96701 1.21804 1.00632 0.99073 0.97903 1.21986 1.01057 0.95966 1.00745 1.19553 0.87240 0.84193 0.75192 1.90669 1.13842 1.87134 1.49827 1.22187 1.02859 0.90853 1.05106 1.22924 1.03113 1.01769 0.91414 1.22947 1.00140 0.95447 0.99995 0.91935 0.90821 0.91097 0.88484 0.86667 0.93604 0.94154 0.92831 0.90042 0.91852 0.92278 0.93749 0.91042 0.92958 0.92769 0.92459 0.91990 0.92943 0.93112 0.85801 0.88386 0.87954 0.88014 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.05 59.85 0.60 1.53 16 2 N -0.59 -9.10 2.38 -182.95 -0.44 -9.54 16 3 C 0.08 1.34 4.29 -5.19 -0.02 1.32 16 4 C 0.49 10.58 6.47 -10.99 -0.07 10.51 16 5 O -0.53 -13.96 15.96 5.56 0.09 -13.87 16 6 N -0.59 -12.49 2.00 -175.05 -0.35 -12.84 16 7 C 0.24 6.19 3.93 -5.19 -0.02 6.17 16 8 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 9 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 12 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 C 0.12 1.96 4.58 -4.04 -0.02 1.94 16 17 C -0.09 -1.29 0.85 -154.51 -0.13 -1.43 16 18 C -0.14 -2.38 6.98 37.15 0.26 -2.12 16 19 C -0.14 -1.59 8.47 37.16 0.31 -1.27 16 20 C -0.14 -2.08 6.84 37.16 0.25 -1.82 16 21 C 0.55 8.91 7.42 -10.98 -0.08 8.83 16 22 O -0.54 -10.49 15.84 5.56 0.09 -10.40 16 23 C -0.19 -2.27 4.79 -91.78 -0.44 -2.71 16 24 C -0.15 -1.41 10.24 -26.71 -0.27 -1.68 16 25 C -0.15 -1.59 10.05 -26.71 -0.27 -1.86 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.63 6.64 -51.93 -0.34 0.29 16 28 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 29 H 0.10 1.27 7.09 -51.93 -0.37 0.90 16 30 H 0.12 1.81 3.95 -51.93 -0.21 1.61 16 31 H 0.05 1.19 5.32 -51.93 -0.28 0.91 16 32 H 0.04 1.22 7.35 -51.93 -0.38 0.84 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 35 H 0.06 0.85 6.11 -51.93 -0.32 0.53 16 36 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.43 5.76 -51.93 -0.30 1.13 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 1.13 6.75 -51.93 -0.35 0.78 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.67 6.49 -51.93 -0.34 0.34 16 45 H 0.12 1.31 7.27 -51.93 -0.38 0.93 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.11 1.34 7.67 -51.93 -0.40 0.94 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -35.46 383.64 -7.66 -43.12 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.24 Total: 2.87 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.32 Total: 3.97 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.05 Total: -48.21 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.18 Total: -24.27 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.46 -7.66 -43.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609214473.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.797 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds