Wall clock time and date at job start Fri Apr 10 2020 22:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00503 * 2 1 4 4 C 1.50701 * 109.46676 * 269.72484 * 3 2 1 5 5 O 1.21280 * 120.00383 * 354.43842 * 4 3 2 6 6 N 1.34774 * 119.99443 * 174.43695 * 4 3 2 7 7 C 1.46505 * 119.99610 * 185.44152 * 6 4 3 8 8 C 1.50706 * 109.47070 * 90.00675 * 7 6 4 9 9 H 1.07999 * 119.99562 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00079 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00369 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00037 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46946 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47140 * 120.00056 * 12 10 8 15 15 H 1.48493 * 109.47515 * 240.00305 * 12 10 8 16 16 C 1.46504 * 120.00368 * 5.44835 * 6 4 3 17 17 C 1.52999 * 109.46976 * 95.81399 * 16 6 4 18 18 C 1.52994 * 109.47432 * 54.28681 * 17 16 6 19 19 C 1.53007 * 109.46469 * 174.28458 * 17 16 6 20 20 C 1.52999 * 109.47036 * 294.27890 * 17 16 6 21 21 C 1.34781 * 119.99643 * 179.72317 * 2 1 3 22 22 O 1.21280 * 120.00055 * 180.27640 * 21 2 1 23 23 C 1.50703 * 120.00098 * 0.27144 * 21 2 1 24 24 C 1.52994 * 117.50342 * 248.62414 * 23 21 2 25 25 C 1.52997 * 117.49948 * 179.97438 * 23 21 2 26 26 H 1.08999 * 109.47052 * 90.00195 * 1 2 3 27 27 H 1.09004 * 109.47191 * 210.00382 * 1 2 3 28 28 H 1.08999 * 109.46718 * 330.00129 * 1 2 3 29 29 H 1.08997 * 109.46534 * 29.72354 * 3 2 1 30 30 H 1.08996 * 109.47462 * 149.72085 * 3 2 1 31 31 H 1.09004 * 109.47306 * 209.99774 * 7 6 4 32 32 H 1.08996 * 109.47155 * 330.00240 * 7 6 4 33 33 H 0.96997 * 120.00356 * 179.97438 * 11 10 8 34 34 H 1.09006 * 109.46830 * 215.81317 * 16 6 4 35 35 H 1.09002 * 109.46779 * 335.81207 * 16 6 4 36 36 H 1.08998 * 109.47627 * 59.99362 * 18 17 16 37 37 H 1.08997 * 109.47417 * 179.97438 * 18 17 16 38 38 H 1.09007 * 109.46767 * 299.99813 * 18 17 16 39 39 H 1.08996 * 109.47130 * 60.00120 * 19 17 16 40 40 H 1.09006 * 109.46571 * 180.02562 * 19 17 16 41 41 H 1.08998 * 109.46858 * 299.99577 * 19 17 16 42 42 H 1.08998 * 109.46761 * 64.16832 * 20 17 16 43 43 H 1.09004 * 109.46680 * 184.16040 * 20 17 16 44 44 H 1.08993 * 109.47453 * 304.16544 * 20 17 16 45 45 H 1.08998 * 115.54793 * 34.33595 * 23 21 2 46 46 H 1.09005 * 117.49619 * 0.02562 * 24 23 21 47 47 H 1.08999 * 117.50205 * 145.02055 * 24 23 21 48 48 H 1.08999 * 117.50028 * 214.97957 * 25 23 21 49 49 H 1.09005 * 117.50035 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7002 -1.4208 5 8 2.1549 0.9686 -2.3405 6 7 3.0178 2.8991 -1.6695 7 6 3.1587 3.3701 -3.0496 8 6 1.9295 4.1483 -3.4429 9 1 1.1238 4.2786 -2.7356 10 6 1.8337 4.6938 -4.7054 11 7 2.8150 4.5355 -5.5664 12 14 0.3097 5.6578 -5.1931 13 1 -0.6409 5.6912 -4.0527 14 1 0.6964 7.0450 -5.5554 15 1 -0.3377 5.0040 -6.3587 16 6 3.4890 3.7315 -0.5597 17 6 4.9868 3.5006 -0.3493 18 6 5.7293 3.7375 -1.6659 19 6 5.5081 4.4714 0.7121 20 6 5.2205 2.0621 0.1165 21 6 2.1388 -1.1673 0.0056 22 8 3.3516 -1.1673 0.0107 23 6 1.3853 -2.4724 0.0058 24 6 1.4551 -3.3284 1.2718 25 6 2.2073 -3.7627 0.0117 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6064 2.0295 0.5095 30 1 3.1478 1.1396 0.5181 31 1 4.0356 4.0130 -3.1264 32 1 3.2758 2.5149 -3.7151 33 1 2.7474 4.9190 -6.4548 34 1 3.3124 4.7816 -0.7927 35 1 2.9490 3.4651 0.3489 36 1 5.5627 4.7623 -1.9977 37 1 6.7963 3.5735 -1.5159 38 1 5.3577 3.0459 -2.4221 39 1 4.9792 4.3026 1.6501 40 1 6.5753 4.3073 0.8617 41 1 5.3416 5.4962 0.3803 42 1 4.9171 1.3716 -0.6704 43 1 6.2784 1.9191 0.3372 44 1 4.6329 1.8708 1.0142 45 1 0.4493 -2.4748 -0.5528 46 1 2.0459 -2.9475 2.1050 47 1 0.5649 -3.8941 1.5467 48 1 1.8116 -4.6141 -0.5421 49 1 3.2932 -3.6678 0.0151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609214473.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:23 Heat of formation + Delta-G solvation = -64.921509 kcal Electronic energy + Delta-G solvation = -27737.619288 eV Core-core repulsion = 24086.061633 eV Total energy + Delta-G solvation = -3651.557655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60486 -40.54663 -38.47963 -37.17544 -36.45018 -35.60518 -34.34563 -31.20405 -29.12016 -28.13298 -28.08542 -27.53976 -26.93212 -25.27608 -23.88900 -23.30260 -20.81548 -20.16233 -19.36781 -18.75619 -18.42681 -18.16578 -17.42777 -16.84826 -16.59506 -16.28305 -15.87539 -15.57077 -15.19881 -15.04720 -14.80645 -14.66732 -14.42069 -14.16451 -13.87088 -13.60719 -13.53473 -13.30842 -13.25407 -13.01397 -12.90549 -12.77877 -12.58557 -12.52921 -12.41863 -12.31723 -12.13709 -11.97094 -11.71969 -11.55552 -11.54409 -11.42049 -11.40888 -10.94634 -10.87384 -10.62156 -9.67951 -9.35466 -8.21021 -6.36221 1.35340 1.37498 1.39717 1.49539 1.78563 1.92227 2.33345 2.51733 2.91998 3.08174 3.51036 3.67249 3.82152 3.83304 3.87535 3.99752 4.06105 4.09073 4.24739 4.28462 4.31325 4.49007 4.58235 4.64263 4.72181 4.73867 4.78031 4.87577 4.90418 4.91793 4.92343 5.02630 5.05561 5.06863 5.10431 5.19115 5.23207 5.24882 5.34847 5.37509 5.42553 5.52868 5.60351 5.88767 6.09321 6.31522 6.71047 6.79245 7.11567 7.28705 7.48095 8.85981 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.004711 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.295086 B = 5942.124828 C = 7435.472970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.599 5.599 3 C 0.092 3.908 4 C 0.485 3.515 5 O -0.596 6.596 6 N -0.593 5.593 7 C 0.259 3.741 8 C -0.540 4.540 9 H 0.056 0.944 10 C 0.006 3.994 11 N -0.931 5.931 12 Si 0.969 3.031 13 H -0.262 1.262 14 H -0.270 1.270 15 H -0.285 1.285 16 C 0.112 3.888 17 C -0.083 4.083 18 C -0.139 4.139 19 C -0.128 4.128 20 C -0.132 4.132 21 C 0.536 3.464 22 O -0.584 6.584 23 C -0.207 4.207 24 C -0.120 4.120 25 C -0.160 4.160 26 H 0.038 0.962 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.040 0.960 32 H -0.019 1.019 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.025 0.975 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.017 0.983 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.140 0.860 46 H 0.095 0.905 47 H 0.139 0.861 48 H 0.124 0.876 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -7.410 20.323 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.329 5.329 3 C -0.034 4.034 4 C 0.273 3.727 5 O -0.477 6.477 6 N -0.323 5.323 7 C 0.138 3.862 8 C -0.578 4.578 9 H 0.075 0.925 10 C -0.193 4.193 11 N -0.571 5.571 12 Si 0.793 3.207 13 H -0.186 1.186 14 H -0.196 1.196 15 H -0.211 1.211 16 C -0.010 4.010 17 C -0.084 4.084 18 C -0.196 4.196 19 C -0.186 4.186 20 C -0.189 4.189 21 C 0.326 3.674 22 O -0.464 6.464 23 C -0.228 4.228 24 C -0.157 4.157 25 C -0.197 4.197 26 H 0.057 0.943 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.155 0.845 30 H 0.139 0.861 31 H 0.058 0.942 32 H -0.001 1.001 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.158 0.842 46 H 0.113 0.887 47 H 0.157 0.843 48 H 0.142 0.858 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.788 -7.709 19.679 21.319 hybrid contribution -0.364 0.616 -1.637 1.787 sum -3.153 -7.093 18.043 19.641 Atomic orbital electron populations 1.22092 0.76820 1.05747 1.02042 1.47507 1.08574 1.04470 1.72382 1.21798 1.01359 0.87457 0.92799 1.21718 0.77232 0.81129 0.92667 1.90613 1.54273 1.54298 1.48540 1.48112 1.58113 1.17593 1.08524 1.18914 0.96720 0.92692 0.77905 1.21784 1.03907 1.33201 0.98951 0.92532 1.25882 0.99778 0.97506 0.96126 1.70082 1.33997 1.46324 1.06661 0.85353 0.78953 0.78226 0.78172 1.18611 1.19555 1.21086 1.21924 0.94170 0.95842 0.89084 1.21008 0.94751 0.96628 0.96013 1.21962 0.99929 1.00694 0.97004 1.21743 1.01524 0.97888 0.97430 1.21903 1.02226 0.94789 1.00008 1.20402 0.87113 0.85767 0.74082 1.90637 1.15923 1.87947 1.51930 1.22236 1.03233 0.89069 1.08255 1.23063 1.03547 0.99293 0.89814 1.23024 0.98892 0.95559 1.02223 0.94273 0.87311 0.88669 0.84451 0.86073 0.94180 1.00105 0.92580 0.90420 0.87856 0.93160 0.91931 0.95571 0.90380 0.91636 0.92185 0.96394 0.91625 0.90878 0.84221 0.88680 0.84302 0.85785 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.58 10.05 127.77 1.28 2.86 16 2 N -0.60 -17.83 2.38 -851.12 -2.02 -19.85 16 3 C 0.09 2.89 4.29 85.63 0.37 3.25 16 4 C 0.48 21.52 6.47 87.66 0.57 22.09 16 5 O -0.60 -33.25 15.96 -3.03 -0.05 -33.30 16 6 N -0.59 -25.99 2.00 -826.12 -1.65 -27.64 16 7 C 0.26 14.38 3.93 85.63 0.34 14.72 16 8 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 9 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 10 C 0.01 0.33 5.46 84.65 0.46 0.79 16 11 N -0.93 -57.55 13.29 21.44 0.28 -57.27 16 12 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 13 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 16 C 0.11 3.56 4.58 86.38 0.40 3.96 16 17 C -0.08 -2.36 0.85 -52.18 -0.04 -2.40 16 18 C -0.14 -4.83 6.98 71.98 0.50 -4.32 16 19 C -0.13 -2.57 8.47 71.98 0.61 -1.96 16 20 C -0.13 -3.82 6.84 71.98 0.49 -3.33 16 21 C 0.54 17.38 7.42 87.66 0.65 18.03 16 22 O -0.58 -23.60 15.84 -3.03 -0.05 -23.65 16 23 C -0.21 -4.70 4.79 -11.54 -0.06 -4.76 16 24 C -0.12 -1.83 10.24 30.61 0.31 -1.52 16 25 C -0.16 -3.29 10.05 30.61 0.31 -2.98 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.11 1.50 6.64 -2.38 -0.02 1.49 16 28 H 0.09 1.53 7.89 -2.39 -0.02 1.51 16 29 H 0.14 3.13 7.09 -2.39 -0.02 3.11 16 30 H 0.12 3.68 3.95 -2.39 -0.01 3.67 16 31 H 0.04 2.24 5.32 -2.38 -0.01 2.23 16 32 H -0.02 -1.28 7.35 -2.39 -0.02 -1.30 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.08 2.54 8.12 -2.38 -0.02 2.52 16 35 H 0.10 2.44 6.11 -2.39 -0.01 2.43 16 36 H 0.05 1.79 7.72 -2.39 -0.02 1.77 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.03 1.12 5.76 -2.38 -0.01 1.11 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.02 0.66 6.75 -2.39 -0.02 0.64 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.07 1.77 6.49 -2.39 -0.02 1.75 16 45 H 0.14 2.68 7.27 -2.39 -0.02 2.67 16 46 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.08 2.11 7.67 -2.38 -0.02 2.09 16 Total: -1.00 -85.72 383.64 5.90 -79.82 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.93 Total: 21.48 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.43 Total: 13.30 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -3.39 Total: -104.76 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -0.10 Total: -56.96 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -85.72 5.90 -79.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609214473.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.897 kcal (2) G-P(sol) polarization free energy of solvation -85.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds